BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492039
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H | c... 1471 0.0
> AT4G27540.1 | Symbols: PRA1.H | prenylated RAB acceptor 1.H |
chr4:13753210-13754745 REVERSE LENGTH=1050
Length=1050
Score = 1471 bits (796), Expect = 0.0
Identities = 861/892 (97%), Gaps = 5/892 (1%)
Strand=Plus/Plus
Query 46 ACAAGAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCCCGATCCTGCTTTC 105
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 ACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCCCGATCCTGCTTTC 136
Query 106 GAATCTTGGCTTCGAGATTCCGGTTACCTCGAGCTCCTCGATCACCGCACCTCCGCCGCT 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GAATCTTGGCTTCGAGATTCCGGTTACCTCGAGCTCCTCGATCACCGCACCTCCGCCGCT 196
Query 166 GCAGCCGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCG 225
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 GCAGCTGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCA 256
Query 226 TCTGACGATGTCGTTTCATCCATTACCGGTGGTttcttcgcttctctcttgtctcgactc 285
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 257 TCTGACGATGTCGTTTCATCCATTACCGGTGGTTTCTTCGCTTCTCTCTTATCTCGACTC 316
Query 286 gtcactgtctcttctcttcttACCATTAACCCTTTCTCCAAGCTCTCCGCCGATGATTTT 345
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 317 GTCACTGTCTCTTCTCTTCTTACTATTAACCCTTTCTCTAAGCTCTCCGCCGATGATTTT 376
Query 346 TCCGGAGATACGCCACCGTGGACCACCGGTTTCTTTGGCAATTGTGACTCTTATTCGTTC 405
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 377 TCCGGAGATACGACACCGTGGACCACCGGTTTCATTGGCAATTGTGACTCTTATTCGTTC 436
Query 406 CCGTCGTCTTCTCAGCAAGCGAGAATGAGAGTTCATGAGAATATCAAACGGTTCGCTAGG 465
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 437 CCGTCGTCTTCTCAGCAAGCGAGAATGAGAGTTCATGAGAATATCAAACGATTCGCTAGG 496
Query 466 AATTACGCTACGTTATTCATCGTCTTCTTCGCTTGTGCACTATATCAGATGCCACTTGCA 525
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 497 AATTACGCTACGTTGTTCATCGTCTTCTTTGCTTGTGCACTATATCAGATGCCACTTGCA 556
Query 526 TTGGTGGGATTGTTAGCAAGCTTAGCCCTTTGGGAGCTGTTCAAATACTGCAGTGACA-G 584
|||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| | |
Sbjct 557 TTGGTGGGATTGTTAGGAAGCTTAGCTCTTTGGGAGCTATTCAAATACTGCAGTGATAAG 616
Query 585 ATGGAAATTTGATCGTCACCCTTCCATGAGGAAATTCTCGATTGGTATTGGACAGTGCGT 644
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 617 -TGGAAATTTGATCGTCACCCTTCCATGAGGAAACTCTCGATTGGTATTGGACAATGCGC 675
Query 645 AACAGCGGTTCTTCTGACGTTTTTGAATGTCCAAATGGCTCTTTTCTCTGCTCTTGCGAT 704
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 AACAGCGGTTCTTCTAACGTTTTTGAATGTCCAAATGGCTCTTTTCTCTGCTCTTGCGAT 735
Query 705 CAGTTATTCAGTTATGATATTGCATGCTGGGTTCAGAAAGCTCACGCCATCCAAGAAACC 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CAGTTATTCAGTTATGATATTGCATGCTGGGTTCAGAAAGCTCACGCCATCCAAGAAACC 795
Query 765 ACCTCGAGGGAGATAAACCGCATCCACAAGAGTTTTGGATTCTGAATGAGA--TTCATCA 822
| ||||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct 796 AACTCGAGGAAGATAAACCGCATCCACACGAGTTTTGGATTTTGAATGAGAGATTCATCA 855
Query 823 GCAGTTTTGGAAATCAAGAATTGTAGTGTTTGGTAACTCAAACTCAGAGAGAGGCAGACA 882
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 856 GCAGTTTTGGAAATCAAGAAATGTAGTGTTTGGTAACTCAAACTCAGAGAGAGGCAGACA 915
Query 883 ACAATAGCAGCCTAGATGGTAGATTAAGAAAGTGTGAATGTTAGACATCATC 934
|||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 916 ACAATAGCAGT-TAGATGGTAGATTAAGAAAGTGTGAATGTTAGACAACATC 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5