BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492040

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27530.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   545    1e-154


> AT4G27530.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G53895.1); 
Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:13752633-13753257 
FORWARD LENGTH=535
Length=535

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 374/412 (91%), Gaps = 6/412 (1%)
 Strand=Plus/Plus

Query  1    GTAGGAAATGGCGGCTATGCTTTTAGCAAAGAGAGGAGGCATACACATATACAGAGCTTC  60
            |||| |||||||||||||| |||||||||||||||||| |||| ||||| | ||||||||
Sbjct  1    GTAGAAAATGGCGGCTATGTTTTTAGCAAAGAGAGGAGCCATAAACATACATAGAGCTTC  60

Query  61   TTCATTACAGAGGGATTACAACAACGGTGCTCGATCTGTTGCTCATGGAGTCATTACCAT  120
            ||||||||| |  |||||||||||| || |||||||||||| | ||||||||||||| ||
Sbjct  61   TTCATTACACATAGATTACAACAACAGTTCTCGATCTGTTGTTGATGGAGTCATTACTAT  120

Query  121  CACTAACTCTCGTTACTTCATATCCCACAGGAACAACGGAGGAGAGAAGTCAAAAGAAGA  180
            |||||||||||||||||||  ||||||| ||||||||   |||||||||||| | |||||
Sbjct  121  CACTAACTCTCGTTACTTCGCATCCCACGGGAACAAC---GGAGAGAAGTCAGAGGAAGA  177

Query  181  GGCGATGGGGACAACTACAGATGGTAAGGCTCCGAATGTGACGTTGAGTCATGCGGCTGA  240
            ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||
Sbjct  178  GGCGATGGGGACAACTACAGATGGTAAAGCTCCGAATGTGACATTGGGTCATGCGGCGGA  237

Query  241  TACAGCCAAAGAAGGATTGAAACGAGCCACCGATGCAGCCATCAAGAAGAAGAATGAAGA  300
            |||||||||||||||||||||||||||||||||||||||||||||||||| |  || |||
Sbjct  238  TACAGCCAAAGAAGGATTGAAACGAGCCACCGATGCAGCCATCAAGAAGA-G--TGGAGA  294

Query  301  TGCCAGCAAGCCCAAGAGTGTAGAGAATGACGAAGGAGATGATCAGGAGAATGTAGCTGT  360
            ||   ||||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct  295  TGTGGGCAAGCCGAAGAGTGTAGAGAATGATGAAGGAGATGATCAGGAGGATGTAGCAGT  354

Query  361  GGGTGATGATGGAACTGCCAAAGGCCAAAATCAGTCAGCAGGATGAGAATAT  412
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  355  GGGTGATGATGGAACTGTCAAAGGCCAAAATCAGTCAGCAGGATGAGAATAT  406



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5