BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492045
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27490.1 | Symbols: | 3'-5'-exoribonuclease family protein ... 1509 0.0
> AT4G27490.1 | Symbols: | 3'-5'-exoribonuclease family protein
| chr4:13739806-13741803 FORWARD LENGTH=966
Length=966
Score = 1509 bits (817), Expect = 0.0
Identities = 924/974 (95%), Gaps = 14/974 (1%)
Strand=Plus/Plus
Query 1 GCCGCGTTCTCTGTCTCTCAAACCCTCAGGCACAGAACAATGGCAGCAAAACCTGGAGCC 60
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1 GCCGCGTTCTCTGTCTCTCAAACCCTCAGGCTCAGAACAATGGCAGCTAAACCTGGAGCC 60
Query 61 GCAACTCCAACGTATTCACC-AAAACTCGTCGGAAGAACTCGGCTTCCTATTTTCAAAGA 119
|||||||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||
Sbjct 61 GCAACTCCAACGTATTCACCTAAAA-TCGTCGGAAGAAGTCGGCTTCCTATATTCAAAGA 119
Query 120 TTCCGACCTCGATTGGTCTCGTCCTGATGGCCGTGGCTTCCACCAATGCCGACCTGCCTT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 120 TTCCGACCTCGATTGGTCTCGTCCTGATGGCCGTGGCTTCCACCAATGCCGACCCGCATT 179
Query 180 ACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACAC 239
Query 240 TAAAGTCATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTTTAGTGA 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 TAAAGTTATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTATAGTGA 299
Query 300 TGTTGGTAGATTGAATTGCAATGTTAGCTATACAACTTTTGCCTCCCCTACTCTTGGTCA 359
||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||| ||
Sbjct 300 TGTAGGTAGATTGAATTGTAATGTTAGCTATACAAATTTTGCTTCCCCTACTCTTGGCCA 359
Query 360 GGGAACTGATCACAAAGAGTATTCATCGATGCTTCACAAAGCATTGGAAGGCGTAATAAT 419
|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 360 GGGAACTGATCACAAAGAATATTCATCAATGCTTCACAAAGCATTGGAAGGTGTAATAAT 419
Query 420 TATGGAGACATTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTGCTTGAATCTGGAGG 479
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 GATGGAGACGTTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTTCTTGAATCTGGAGG 479
Query 480 AAGTGACCTCTCTGTTGTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTAT 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAGTGACCTCTCTGTTTTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTAT 539
Query 540 GATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATTGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 GATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATAGA 599
Query 600 CCCGGTTACAGAAGAGGAAGGATGTGAAGATGGAAGCTTTATGATGACGTGCATGCCATC 659
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CCCGGTTACAGAGGAGGAAGGATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATC 659
Query 660 TCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACGCCTAATATCAACGA 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGA 719
Query 720 GGCAATGCAGCTTTGCTTGGATGCTTGTTCTAAACTTGGAGAGATCATGCGGGATT-TAC 778
||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| | |
Sbjct 720 GGCAATGCAGCTTTGCTTGGATGCTAGTTCAAAACTTGGAGAGATCATGCGTGATTGT-C 778
Query 779 TGAAACAGGCTGCCTCAGCTTCCGAAGAATGAACATAAATCAAGAAACTATGATTTTGGA 838
|||||||| |||||||||||||||| |||||| ||||||| || |||||||||||||
Sbjct 779 TGAAACAGTCTGCCTCAGCTTCCGATGAATGAGCATAAAT-AA----CTATGATTTTGGA 833
Query 839 TTGTAGCTCAGACTTGTTATGAAGCCGGTTT-AGCTGTTAGAGGTAAACGGATTTAGTCT 897
|||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||
Sbjct 834 TTGTAGCTCAGACTTGGTATGAAACCGGTTTTAGCTGTTATAGGTAAACGGATTTAGTCT 893
Query 898 AAACCTGTGTGGTGTAGTTGAAACCGATGTATCTTTTCACATTAAGATTTGATGGAACTA 957
||||||||||| | |||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct 894 AAACCTGTGTG-T--AGTTTAAACCGATGTATGTTTTCACAT-AAGATTTGATGGAACTA 949
Query 958 GATCTTTAGTTATG 971
||||||||| ||||
Sbjct 950 GATCTTTAGCTATG 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47521503062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5