BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492046
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27480.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2287 0.0
AT5G15050.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 219 9e-56
> AT4G27480.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr4:13736835-13738915
REVERSE LENGTH=1542
Length=1542
Score = 2287 bits (1238), Expect = 0.0
Identities = 1427/1514 (94%), Gaps = 30/1514 (2%)
Strand=Plus/Plus
Query 52 GTAATCCGACATTTTAATT-AATAAATCTTCGTTTCAGACAAAGACAACCTCGTGGATAG 110
||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 34 GTAATCCGACACTTTAATTAAACAAATCTTCGTTTCAGACAAAGACAACCTCGTGGATTG 93
Query 111 TGTTAAGAACTGCCCGGATCTTTAAACATTCTCGCGTCATATCCATGAAA-ATTAAGAAT 169
||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 94 TGTTAAGAACTGCCCGGATCTTTAAACATTCTCACGTCATCTCCATGAAATTTTAAGAA- 152
Query 170 CAGGTTAGGCGCAACCTCAATTTGTGAAGATCTTGCTTCTCTGATGCATCTACAAGACCA 229
| |||||| ||||| ||||||||||||||| |||||||||||| || |||| | ||
Sbjct 153 C----CAGGCGCTACCTCGATTTGTGAAGATCTTTCTTCTCTGATGCGTCGACAATATCA 208
Query 230 AAGTTTTGG---C-TTC--T----T----TT-G---TT-A-A-C-ATAAC-TATGAGAAG 266
|||| |||| | ||| | | || | || | | | || || |||||||||
Sbjct 209 AAGTGTTGGCTTCTTTCGTTGACATAACATTGGTTTTTGAGATCGATCACATATGAGAAG 268
Query 267 GTTCTTTAATGGCGTCCTCGAACTCAGAGAAGAGATGGATTTTCCCTCTAGCAATGGCTT 326
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 269 GCTCTTTAATGGCGTCCTCAAACTCAGAGAAGAGATGGATATTCCCTCTAGCAATGGCTT 328
Query 327 CTCTCATGTTCATATTCCTTATAGCTGCATCCTTCAACATGGGCCTCCTCTCTTCTGTTC 386
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 329 CTCTCATGTTCATATTCCTTATAGCTGCATCCTTCAACATGGGTCTCCTCTCTTCTGTCC 388
Query 387 GTTCTATTAACTCACTCATCTTCTCCTACAATCTATCGACCACGAACGAGACACGAGCCG 446
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 389 GTTCTATTAACTCACTCATCTTCTCCTACAATCTATCGACCACCAACGAGACACGAGTCG 448
Query 447 AATTCGCAGAGTCAAAGATCAATCAGTCCTCTCATCCTCCTCCAGTACAGCCTAGTCCTC 506
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 449 AATTTGCAGAGTCAAAGATCAATCAGTCCTCGCATCCTCCTCCAGTACAGCCTAGTCTTC 508
Query 507 CTCGCTTTGCTTATCTAGTTTCAGGGTCAAGAGGTGACTTAGAGAGTCTATGGAGAGTGT 566
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 509 CTCGCTTTGGTTATCTAGTTTCAGGGTCAAGAGGTGACTTAGAGAGTCTGTGGAGAGTGT 568
Query 567 TAAGAACATTGTACCATCCGAGGAATCAATATGTTGTTCATCTTGATCTCGAGTCTCCTG 626
|| ||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 569 TACGAACATTATACCATCCTAGGAATCAGTACGTTGTTCATCTTGATCTCGAGTCTCCTG 628
Query 627 CTGAAGAGAGGCTTGAGCTGGCTAAACGTGTGAGTGAAGATCCTGTTTTTAGTGATGTTG 686
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 629 CTGAAGAGAGGCTTGAGCTGGCTAAACGTGTGAGCCAAGATCCTGTTTTTAGCGATGTTG 688
Query 687 GGAATGTTCACATGATCACAAAGGCTAACCTCGTTACGTATCGAGGACCCACTATGGTGG 746
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 689 GAAATGTTCACATGATCACAAAGGCTAACCTTGTTACGTATCGAGGACCCACAATGGTGG 748
Query 747 CTAACACGCTCCACGCTTGCGCTATTCTCTTGAAGCAGAGTAAAGAATGGGATTGGTTCA 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 CTAACACGCTCCACGCTTGCGCTATTCTCTTGAAGCAGAGTAAAGAATGGGATTGGTTCA 808
Query 807 TCAATCTCAGTGCCTCGGATTATCCTCTAGTCACTCAAGATGATCTCATTGATACATTCT 866
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 809 TCAATCTCAGTGCCTCGGATTATCCTCTAGTCACTCAAGATGATCTGATTGATACATTCT 868
Query 867 CGGGATTGGACCGGAACCTCAACTTTATCGACCACAGTAGCAAACTAGGCTGGAAAGAAG 926
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 CGGGACTGGACCGGAACCTCAACTTTATCGACCACAGTAGCAAACTAGGCTGGAAAGAAG 928
Query 927 ATAAACGAGCAAAGCCTCTGATCATAGACCCGGGGCTTTACTCCACAAAAAAGTCAGATG 986
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 929 AAAAACGAGCAAAGCCGCTGATCATAGACCCGGGGCTTTACTCCACAAAGAAGTCAGATG 988
Query 987 TCTTCTGGGTTACACCTCGAAGAACCATGCCAACTGCATTCAAACTATTTACCGGTTCCG 1046
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 989 TCTTCTGGGTTACACCTCGCAGAACAATGCCAACTGCATTCAAACTATTTACCGGTTCCG 1048
Query 1047 CTTGGATGGTCTTATCTCGGTCGTTCGTAGAATATTGCATTTGGGGATGGGACAATCTTC 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 CTTGGATGGTCTTATCTCGGTCGTTCGTAGAATATTGCATTTGGGGATGGGACAATCTTC 1108
Query 1107 CACGAACTCTTCTAATGTATTACACCAATTTCCTCTCTACACCGGAAGGATATTTCCATA 1166
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CACGGACTCTTCTAATGTATTACACCAATTTCCTCTCTACACCGGAAGGATATTTCCATA 1168
Query 1167 CTGTCATCTGCAACGCTCCAGAGTACTCTTCCACCGTGCTGAACCACGACCTGCATTTCA 1226
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1169 CTGTCATCTGCAACGCTCCAGAGTACTCTTCCACTGTGCTGAACCACGACCTGCATTTCA 1228
Query 1227 TCTCCTGGGACCGCCCTCCTAAACAGCATCCTCGGACGCTCAACATCAACGATATAGAGA 1286
|||| |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 1229 TCTCATGGGACCGCCCTCCTAAACAGCATCCTCGGGCGCTCACCATCAACGATACAGAGA 1288
Query 1287 AGATGATTGCAAGTGGAAGTGCGTTTGCCCGCAAGTTCAGACACAATGATCCTGCCTTGG 1346
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1289 GGATGATTGCAAGTGGAAGTGCGTTTTCCCGCAAGTTCAGACACAATGATCCTGCCTTGG 1348
Query 1347 ATAAGATCGATAAAGAGCTGCTCGGTAGAGGTAACGGAAACTTTACGCCTGGTGGTTGGT 1406
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1349 ATAAGATCGATAAAGAGCTGCTCGGTAGAGGTAACGGAAACTTCACGCCTGGTGGTTGGT 1408
Query 1407 GTGCAGGGGAACCAAAATGCTCGAGGGTTGGTGATCCATCAAAGATCAAGCCCGGTCCTG 1466
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1409 GTGCAGGGGAACCAAAATGCTCGAGGGTTGGTGATCCGTCGAAGATCAAGCCCGGTCCTG 1468
Query 1467 GAGCTAACAGGCTTCGTGTGCTTGTTAGCAGACTTGTTTTGACATCTAAATTGACTCAAA 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 GAGCTAACAGGCTTCGTGTGCTTGTTAGCAGACTTGTTTTGACATCTAAATTGACTCAAA 1528
Query 1527 GGCAATGTAGATAG 1540
||||||||||||||
Sbjct 1529 GGCAATGTAGATAG 1542
> AT5G15050.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:4871639-4873598
REVERSE LENGTH=1630
Length=1630
Score = 219 bits (118), Expect = 9e-56
Identities = 431/576 (75%), Gaps = 46/576 (8%)
Strand=Plus/Plus
Query 707 AAGGCTAACCTCGTTACGTATCGAGGACCCACTATGGTGGCTAACACGCTCCACGCTTGC 766
|||||||| ||||||||||||| || || |||||||||||||| || || ||||| |||
Sbjct 601 AAGGCTAATTTCGTTACGTATCGTGGTCCAACTATGGTGGCTAATACACTTCACGC-TGC 659
Query 767 -GCTATTCT-CTT-GAAGCAGAGTAAAGAATGGGATTGGTTCATCAATCTCAGTGCCTCG 823
|| ||| | ||| | | || || || |||||||||||||||||||||||||||||
Sbjct 660 AGCGATTTTGCTTCG-TGAAG-GTGGTGATTGGGATTGGTTCATCAATCTCAGTGCCTCT 717
Query 824 GATTATCCTCTAGTCACTCAAGATGATCTCATTG-ATACATTCTCGGGAT-TGGAC-CG- 879
||||||||||| || || ||||||||||| ||| |||| || ||| || | | ||
Sbjct 718 GATTATCCTCTCGTAACACAAGATGATCTG-TTGCATACGTTTTCGT-ATCTTC-CTCGA 774
Query 880 GAACCTCAACTTT-ATCGACCACAGTAGCAA-ACTAGGCTGGAAAGAAGA-TAA-ACGAG 935
|| | |||| ||| ||||| || | ||||| | | ||||||||||| | | | | |||
Sbjct 775 GATC-TCAA-TTTCATCGATCATACAAGCAACATT-GGCTGGAAAGA-GTCTCATA-GAG 829
Query 936 CAAAGCCTCTGATCATAGACCCGGGGCT-T-TACTCCACAAA-AAAGTCAGATGTCTTCT 992
|||||||| | || || || || || | | || | |||| |||| | ||||| ||||
Sbjct 830 CAAAGCCTATAATTATTGATCCTGGTTTGTATA-TGT-CAAAGAAAG-CTGATGTTTTCT 886
Query 993 GGGTTACACCTCGAAGA-ACC-ATGCCAACTGCATTCAAACTATTTACCGGTTCCGCTTG 1050
||||| ||| ||||| | ||||| || || |||||||| || || || || || ||
Sbjct 887 GGGTTTCACA--GAAGAGAAGTATGCCTACAGCTTTCAAACTCTTCACAGGATCTGCGTG 944
Query 1051 GATGGTCTTATCTCGGTCGTTCGTAGAATATTGCATTTGGGGATGGGACAATCTTCCACG 1110
|||| | |||||| | | || || || |||| ||| ||||||||||| |||||||| ||
Sbjct 945 GATGATGTTATCTAGACCTTTTGTGGATTATTTCATATGGGGATGGGATAATCTTCCTCG 1004
Query 1111 AACTCT-TCTAATGTATTACACCAATTTCCTCTC-TACACCGGAAGGATATTTCCATACT 1168
|| | | | ||||||||||| | || ||||| || | | || ||||| || ||||| |||
Sbjct 1005 AATTGTGT-TAATGTATTACGCAAACTTCCTTTCAT-CGCCAGAAGGTTACTTCCACACT 1062
Query 1169 GTCATCTGCAACGCTCCAGAGT--ACTCTTC-CACCGTGCTGAACCAC-GACCTGCATTT 1224
|| || ||||| |||| ||||| || | | || || | | ||| | ||| | |||||
Sbjct 1063 GTGATTTGCAATGCTCGAGAGTTTAC-CAACACAACG-GTT-AAC-AGTGACTTACATTT 1118
Query 1225 CATCTCCTGGGACCGCCCTCCTAAA-CAGCATCCTC 1259
|||||| |||||| ||||| ||| || |||||||
Sbjct 1119 CATCTCATGGGACAATCCTCC-AAAGCAACATCCTC 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76003625130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5