BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492048
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27470.1 | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | ... 1334 0.0
> AT4G27470.1 | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3
| chr4:13734999-13736518 FORWARD LENGTH=1102
Length=1102
Score = 1334 bits (722), Expect = 0.0
Identities = 844/902 (94%), Gaps = 11/902 (1%)
Strand=Plus/Plus
Query 1 CATCACCGTCGTTTGTCTTTAAAACCTTTTGCGATTACCATCATCGCACGTTGAATATAC 60
|||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 6 CATCTCCGTCGTTTGTCTTTAAAACCTTTTGCCATTACCATCTTCGCACGTTGAATATAC 65
Query 61 GTCGAGTTT-AACATCTTCCAATCTCTGAAAG-CCCTC-CTCCTCT-C--TTCGAGCTTC 114
||||| ||| |||||||||||||||||||||| ||||| || ||| | |||| |||||
Sbjct 66 GTCGACTTTAAACATCTTCCAATCTCTGAAAGCCCCTCTCTTTTCTCCATTTCGTGCTTC 125
Query 115 ATCATCA-TCGTC-TCGTCGTCGGATCTTACCTCTCATGGAAGGGAACTTCTTTATCAGG 172
||||| | ||||| ||| | |||| |||||||||||||||||||||||||||| ||||||
Sbjct 126 ATCAT-ATTCGTCGTCG-CTTCGGGTCTTACCTCTCATGGAAGGGAACTTCTTCATCAGG 183
Query 173 TCTGATGCTCAACGAGCACATGACAATGGTTTCACAGTCAAACAAAAACCTAATCTCATC 232
||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| |
Sbjct 184 TCTGATGCTCAACGAGCACATGACAATGGCTTCATAGCCAAACAAAAACCTAATCTCACC 243
Query 233 ACGGCTCCAACGGGAGGTCAAGCTAATGAAAGTGGCTGTTTTGATTGCAACATCTGTCTA 292
||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 244 ACGGCTCCAACAGCAGGTCAAGCTAATGAAAGTGGCTGTTTTGACTGCAACATCTGTTTA 303
Query 293 GATACAGCCCATGATCCGGTTGTCACTCTCTGTGGACACCTTTTCTGTTGGCCTTGCATT 352
|| ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct 304 GACACAGCCCATGATCCGGTGGTCACTCTCTGCGGGCACCTTTTCTGCTGGCCTTGCATT 363
Query 353 TACCAGTGGTTACATGTTCAGTTATCTTCTGTCTCCATTGATCAGCACCAGAACAACTGC 412
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 364 TACAAGTGGTTACATGTTCAGTTATCTTCTGTCTCCGTTGATCAGCACCAGAACAATTGC 423
Query 413 CCTGTCTGTAAATCCAACATTACTATCACCTCTTTGGTTCCTCTCTATGGAAGAGGCATG 472
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CCTGTTTGTAAATCCAACATTACTATCACCTCTTTGGTTCCTCTCTATGGAAGAGGCATG 483
Query 473 TCTTCGCCTTCTTCCACGTTTGGCTCCAAGAAACAAGACGCACAGTCCACGGATATACCC 532
||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct 484 TCTTCGCCTTCTTCCACGTTTGGCTCCAAGAAACAAGACGCACTGTCCACTGACATACCC 543
Query 533 CGCAGACCCGCTCCATCAACCTTAAACAATCCAATCACCTCAGCGTCATCTCTGAACCCA 592
|||||||| ||||||||| ||||| |||||| || |||||||| |||||||||||||||
Sbjct 544 CGCAGACCTGCTCCATCAGCCTTACGCAATCCGATTACCTCAGCATCATCTCTGAACCCA 603
Query 593 AGCTTGCAACATCAAACTCTGTCTCCATCATTTCATAATCATCAGTATTCCCCTCGTGGC 652
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 604 AGCTTGCAACATCAAACTCTGTCTCCTTCATTTCATAATCATCAGTATTCCCCTCGTGGC 663
Query 653 TTCACCACTACCGAATCAACCGACCTTGCCAATGCTGTAATGATGAGTTTCCTCTACCCG 712
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTCACCACAACCGAATCAACCGACCTTGCCAATGCTGTAATGATGAGTTTCCTCTACCCT 723
Query 713 GTGATTGGAATGTTTGGGGACATGGTCTACACAAGGATATTCGGGACCTTCACAAACACA 772
||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 724 GTGATTGGAATGTTTGGAGACCTGGTCTACACCAGGATATTCGGGACCTTCACAAACACA 783
Query 773 ATAGCTCAGCCTTACCAAAGCCAGAGGATGATGCAGCGCGAGAAGTCTCTTAACCGGGTA 832
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 784 ATAGCTCAGCCTTACCAAAGCCAGAGGATGATGCAGCGTGAGAAGTCTCTTAATCGGGTA 843
Query 833 TCCATATTCTTCCTTTGTTGCATCATCCTTTGCCTCCTTCTCTTCTAGCTCCCTCTCT-T 891
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 844 TCGATATTCTTCCTTTGTTGCATCATCCTTTGCCTCCTTCTCTTCTAGCTCTCTCTCTCT 903
Query 892 CT 893
||
Sbjct 904 CT 905
Score = 219 bits (118), Expect = 6e-56
Identities = 145/158 (92%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 871 TCTCT-TCTAGCTCCCTCTCTTCTTGTATAGTTTGTGATGTAAATAGGCTGTAAAACTCG 929
||||| ||| ||| |||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 945 TCTCTCTCTCTCTCTCTCTCTTCGTGTATAGTACGTGATGTACATAGGCTGTAAAACTCG 1004
Query 930 AAGTAACTGTGGTATAACCACTACTGCAGACACCATTGTTCCGAGTCAGGTCTCAAATTG 989
|| | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1005 AATTTACTGTGGTATAACCACTACTGCAGACACCGTTGTTCCGAGTTAGGTCTCAAATTG 1064
Query 990 CAGGCCAATATCTTGTTGTGTATTACATAGATATCGAT 1027
||||||||||||||||||||||||||| ||||||||||
Sbjct 1065 CAGGCCAATATCTTGTTGTGTATTACAAAGATATCGAT 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5