BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492064
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27350.1 | Symbols: | Protein of unknown function (DUF1223)... 1653 0.0
> AT4G27350.1 | Symbols: | Protein of unknown function (DUF1223)
| chr4:13690821-13692796 REVERSE LENGTH=1170
Length=1170
Score = 1653 bits (895), Expect = 0.0
Identities = 1086/1171 (93%), Gaps = 41/1171 (4%)
Strand=Plus/Plus
Query 1 GCCGCTCGACGTGTTAATCAATCTTCTTCCTGCCTGAAGA----TCTCTGAAAGACATTC 56
||||||||||||| | | |||||||||||| |||||||| ||||||||||||||||
Sbjct 6 GCCGCTCGACGTG-T--T-AATCTTCTTCCT-CCTGAAGATCTCTCTCTGAAAGACATTC 60
Query 57 TCAAATTTTCTCGGGAAAACATCTTTCT-TGATTCGTTTATCTCCAGATCTTTCCTTCTT 115
||||||||||||||||||||| |||| | |||||||||| |||||||||| |||||||||
Sbjct 61 TCAAATTTTCTCGGGAAAACACCTTTTTCTGATTCGTTTTTCTCCAGATCATTCCTTCTT 120
Query 116 TCTTATATCCGATTTCTTCGGGAGGAGGCGAAGAGACGGTC-ACAATTTTATCCAATGGC 174
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 121 TCTTATATCCGATTTCTTCGGGAGGAGGCGAAGAGACGGTCAACAATTTTATCCAATGTC 180
Query 175 GCGCCGTCTTTTCGCCTGTTTCGGCCTCAAGAAATCTTCAACTAAACCTATCTCCGGAGG 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 181 GCGCCGTCTTTTCGCCTGTTTCGGCCTCAAGAAATCTTCAACTAAACCTATCTCTGGTGG 240
Query 235 TAACAATTCCGCCGCCGTCTCCGCAGATATTCCCGCCGGAGACGGACCTGTTCTCGTCCA 294
|||||||||||||||||| ||||||| |||||||||||||| || || |||||||||||
Sbjct 241 TAACAATTCCGCCGCCGTAGCCGCAGAAATTCCCGCCGGAGATGGTCCCGTTCTCGTCCA 300
Query 295 GCTATTCTCGTCGCAAGGATGTAAAACATCGCCGGCGGCGGAGATGTTGATGTCCCGGCT 354
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 GCTATTCTCGTCTCAGGGATGTAAAACATCGCCCGCGGCGGAGATGTTGATGTCCCGGCT 360
Query 355 AGGTCGAGGTGATTTCGACGCCCAGATCCGTGGAGAAGATGGTGGATCTGGATCTCCGGC 414
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 361 AGGTCGAGGTGATTTCGACGCTCAGATCCGTGGCGAAGATGGTGGATCTGGATCTCCGAC 420
Query 415 GATGGTTTTGGTGTTCCATGTGGATTATTGGGATTACAAAGGGTGGAAAGATCCGTATGG 474
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 GATGGTTTTGGTGTTTCATGTGGATTATTGGGATTACAAGGGGTGGAAAGATCCGTATGG 480
Query 475 ATCGAGCCAATGGACGGTGAGGCAGAAGGCGTATGTAGAGGCGTTGAATCTGGATACGAT 534
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 ATCGAGCCAATGGACGGTGAGGCAGAAGGCGTATATAGAGGCGTTGAATCTGGATACGAT 540
Query 535 GTTTACTCCGCAGCTTGTAG-TTCAAGGCCGTTCTCAATTGATCGGAAACGAGGAAGAGA 593
|||||||||||||||||| | | ||||| ||||||||||||||||||||||| || ||||
Sbjct 541 GTTTACTCCGCAGCTTGT-GATCCAAGGTCGTTCTCAATTGATCGGAAACGAAGAGGAGA 599
Query 594 CGCTGCTCAAATCTATCTCCGAAGCGCCTAGGTTTCCTTCTCCAGCTTTCCGGGCGACTT 653
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 CGCTGCTCAAATCTATCTCCGAAGCGCCTAGGTTTCCTTCTCCAGCCTTCCGGGCGACTT 659
Query 654 TCCAGAGACCAACCTCAGAGACACTGCAAGTATCACTCACCGGAGCCTTGAGAATGAAAG 713
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 660 TCCAGAGACCAACCTCAGAGACACTGCAAGTATCACTCACCGGAGCTTTGAGAATGAAAG 719
Query 714 TAGACGGAAACGGAATGGACATAATGGTGGCGATATACGAAACCGGGCTTGTGAACGACT 773
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 TAGACGGAGACGGAATGGACATAATGGTGGCAATATACGAAACCGGGCTTGTGAACGACT 779
Query 774 GCGCGAGAGGAGAGAACGAAGGAAGAATGTTGTCGAATGACTACGTTGTCAGAAAGATGG 833
| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 780 GTGCAAGAGGAGAGAACGAAGGAAGAATGTTGTCGAATGATTACGTTGTAAGAAAGATGG 839
Query 834 AAAAGATGTGCACTGTGAAAGATGTAACACCGAAGAAACCAGTCTCGGGGACTGCTCATT 893
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 840 AAAAGATGTGCACTGTGAAAGATGTAGCACCGAAGAAGCCAGTCTCGGGGACTGCTCATT 899
Query 894 TTACGCTCTGGGATGGATTCAACAGCAGCAAATGTGGAGTCGCCGTCTTTCTTCAGAATT 953
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 TTACGCTCTGGGATGGATTCAACAGCAGCAAATGTGGAGTCGCCGTCTTTCTTCAGAACT 959
Query 954 CGTCTCTTCAGATTTTTGGTACACAGAGTTTTAAGTTACCTGATGAGATTTGAGTTGATT 1013
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 960 CTTCTCTTCAGATTTTTGGTACACAGAGTTTTAAATTACCTGATGAGATTTGAGTTAATT 1019
Query 1014 -----AA-A----A----TAAAGAAAAGAAAAC-GATCGTTGTATCGTCCATATTTTGCT 1058
|| | | ||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1020 TCCCTAATATCTGAAAAATAAAGAAAAGAAAACCGATCTTTGTATCGTCCATATTTTGCT 1079
Query 1059 TGTGATAATCATCCGGTTTCCACTCTGCTTT-GTACAGTTAT----GTGTGACTGCTTAT 1113
|||||||||||| ||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct 1080 TGTGATAATCATTCGGGTTCCACTCTGCTTTTGTACAGTTATAAATGTGTGACTACTTAT 1139
Query 1114 A--------GGGTTTAAGGTTTCTTCTAATT 1136
| ||||||||||||||||||||||
Sbjct 1140 AACTTAATAGGGTTTAAGGTTTCTTCTAATT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55722604950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5