BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492065
Length=2101
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27340.1 | Symbols: | Met-10+ like family protein | chr4:13... 3206 0.0
> AT4G27340.1 | Symbols: | Met-10+ like family protein | chr4:13687196-13690469
REVERSE LENGTH=2129
Length=2129
Score = 3206 bits (1736), Expect = 0.0
Identities = 2001/2124 (94%), Gaps = 38/2124 (2%)
Strand=Plus/Plus
Query 1 TAAAACCTTTGATGCACAAACGCGGGAAATGACCTTCACTGTCTCAACACCAAAATCCAA 60
||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 11 TAATACCTTTGATGCACAAACGCGGGAAATGACCTTCATTGTCCCAACACCAAAACCCAA 70
Query 61 ATCCAACAAGAAGC--------TCAGAAAATGGTGTCAAAGCTATCTCTTTTCCGAGCCA 112
||||| || ||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 71 ATCCATCAGGAAGCTGAGTGAATCAGAAAATGGTGTCAAAGCTTTCTCTTTTCCGAGCCA 130
Query 113 ATTCACTTCCTTTCCCTGTCTTCTCTTCCTACTCAGCTCTTTTTATCCATAAACCCTATC 172
||||||||||||| || ||| ||||||||||||| |||| |||||||| |||||||||||
Sbjct 131 ATTCACTTCCTTTTCCAGTCATCTCTTCCTACTCTGCTCGTTTTATCCTTAAACCCTATC 190
Query 173 CCAAACCTAAAACCCTTATCTTCTGCGTCTTCTCCAGTAATCTCTCCTCCACCACCGTTC 232
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 191 CCAAACCTAAAACCCTTATCTTCTGTGTCTTCTCCAGTAATCTCTCCTCCACCACCTTTC 250
Query 233 CCTATGGCCCGTCTCTTCTAAAAGGGAAGAAGCCTTTGCTAGATGATCTTAGATTGGCTT 292
| ||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||| ||||
Sbjct 251 CGTATGGCCCGTCTCTTCTGAAAGGAAAGAAGCCTGTGCTAGATGATATTAGATTAGCTT 310
Query 293 CAATTGGTCGAGACAGAGATGCCCATCGAAGCAAAATTGGAGA-TTTGGAAGAATCAATT 351
||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||||
Sbjct 311 CAATTGGTCGAGACAGAGATGCCCATCGAGGCAAAATTGGAGAGTTT-GATGAATCAATT 369
Query 352 GAGAAATG-TGTTCTTTTGAATGAAGATGAATTTACTAGGGTTTTCGAGATTTCGGCGAT 410
|||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 370 GAGAAA-GATGTTCTTTTGAATGAAGATGAATTTACTAGGGTTTTTGAGATTTCGGCGAT 428
Query 411 TCGGGTCCCGGCGAAGGACTGTTTCGCACTTGAGAATCGTCTCCGTGGTCATCTTCTTAA 470
||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 429 TCGAGTCCCGGCGAAGGATTGTTTCGCGCTCGAGAATCGTCTCCGTGGTCATCTTCTTAA 488
Query 471 TTGGCCTAGGATTCGGAACATTGCTAGGGTTCCTGGAGATGAAATTGAAGAAGATGTGGT 530
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 489 TTGGCCTAGGATTCGGAACATTGCTAGGGTTCCTGGAGATGAGATTGAAGAAGATGTGGT 548
Query 531 GCAGCTGTTGGGCCGTGAGAC---TGAAGATGAAG-A-A-GAAGATAGTATTGTGGATTC 584
| ||||||||||||||||||| |||||| |||| | | ||||||||| ||||||||||
Sbjct 549 GAAGCTGTTGGGCCGTGAGACTGATGAAGAAGAAGAAGATGAAGATAGTGTTGTGGATTC 608
Query 585 GGTTGATCGGAGAATAAGAGGGAAAGCAGAAGGGGATGGGGAGAGATTGAGTTCAGTGTT 644
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GGTTAACCGGAGAATAAGAGGGAAAGCAGAAGGGGATGGGGAGAGATTGAGTTCAGTGTT 668
Query 645 GCATAGAGATAAACTCGCAAGGACATTTAATTCAACTGGCTATCTCAAATTCAGAAACTT 704
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 669 GCATAGAGATAAACTCGCCAGGACATTTAATTCAACTGGGTATCTCAAATTCAGAAACTT 728
Query 705 GGCCAAGATTTCTCGGCCAAAGAGGAAGAGGAAGACAGAGA-AAGCAACGGTGAGGAAGG 763
||||||||||||||||||||||||||||||||||||||||| || ||| || | ||||||
Sbjct 729 GGCCAAGATTTCTCGGCCAAAGAGGAAGAGGAAGACAGAGAGAA-CAAGGGAGGGGAAGG 787
Query 764 AAAAGGAAAAT-GGAAGCAGACGCAACGAAATGGCGGTGGTGGAAGTGGTGGAAGA-TGG 821
|||||| |||| | |||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 788 AAAAGG-AAATAGCAAGCAGACGCAACGAAATGGCGGTGGTGGAAGTGGTGGAA-ACTCG 845
Query 822 AGGAGGAGCTGAGGATTTTGAGGGGTTACTT-GGAGAAGGCTATGGTAGTAGAGGAAGAT 880
|||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 846 AGGAGGAGAAGAGGATTTTGAGGGGTTA-TTGGGAGAAGGCTATGGTAGTAGAGGAAGAT 904
Query 881 GGAGAGGTTCAACAAGATTGTTGCTTTTGGATGAGAAATATTCCGGAGAGCAAGTTCAAG 940
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 905 GGAGAGGTTCAACAAGATTGTTGCTTTTGGATGAGAAATATTCCGGTGAGGAAGTTCAAG 964
Query 941 ACTTGCCTGAGGCTATCAAGGTTCTGTTTGCAGAAGCTAAAATGACCGATG-AGAGCTTA 999
|||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||
Sbjct 965 ACTTGCCTGAGGCTATCAAGGTTCTGTTTGCAGAAGCTAAAATGGCTGATGCA-AGCTTA 1023
Query 1000 ATTTTTGAGCTAGTGAAATGCAGAGTGACTTTGTTCTATGACTATTGGCCAATGATTGAG 1059
| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1024 AGTTTCGAGCTAGTGAAATGCAGACTGACTTTGTTCTATGACTATTGGCCAATGATTGAG 1083
Query 1060 ATATTGGAGGCTGTACTACCTAAGGGTATAG-TTGTACCTTCAGCATTTGAGATGGTGGG 1118
||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||
Sbjct 1084 ATATTGGAGGCTGTACTACCTAAGGGTAT-GATTGTGCCTTCGGCATTTGAGATGGTGGG 1142
Query 1119 GCATATTGCGCACCTGAATCTAAGAGATGAGCATCTACCATACAAAAGGCTCATCGCTAA 1178
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1143 GCATATTGCGCATCTGAACCTAAGAGATGAGCATCTACCATACAAAAGGCTCATAGCTAA 1202
Query 1179 GGTAGTCCTGGACAAGAATCAGCCAAAGATACAAACCGTTGTGAATAAGATTGATCCTAT 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GGTAGTCCTGGACAAGAATCAGCCAAAGATACAAACCGTTGTGAATAAGATTGATCCTAT 1262
Query 1239 CCACAATGACTTCAGAACTATGCAGCTAGAGGTTTTAGCTGGAAACCATTCGCTGGTGAC 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 CCACAATGACTTCAGAACTATGCAGCTAGAGGTTTTAGCTGGAAACCATTCGCTGGTGAC 1322
Query 1299 TCTGGTTGTTGAAAATGGACTGCGCTTTCATGTTGATCTAGCTAGAGTATATTGGAATTC 1358
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1323 TCTAGTTGTTGAAAATGGACTGCGCTTTCATGTTGATTTAGCTAGAGTATATTGGAATTC 1382
Query 1359 TAAACTTGGGACAGAAAGACAGAGGCTGCTACTCGGGTTCGACCAAAATGACGTTGTCTG 1418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GAAACTTGGGACAGAAAGACAGAGGCTGCTACTCGGGTTCGACCAAAATGACGTTGTCTG 1442
Query 1419 TGATGTTTTTGCTGGAGTTGGTCCTATCGCACTTGCTGCAGCAAGAATTGTAAAACGTGT 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TGATGTTTTTGCTGGAGTTGGTCCTATCGCACTTGCTGCAGCAAGAATTGTAAAACGTGT 1502
Query 1479 ATATGCCAATGACCTGAATCCTCATGCAGTAGAATTTATGGAACAGAATAGTGTTGTCAA 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 ATATGCCAATGACCTGAATCCTCATGCAGTAGAATTTATGGAACAGAATAGTGTTGTCAA 1562
Query 1539 TAAGCTCGAGAAGAGAATCGAGATCTTTAACATGGACGGACGAAGATTCATAAAGGCTAT 1598
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 TAAGCTCGAGAAGAGAATTGAGATCTTTAACATGGACGGACGAAGATTCATAAAGGCTAT 1622
Query 1599 GTTTTCAAGCGAAAAAGGTCGGAAAGTCACCCAAGTAGTCATGAATTTACCAAAAGATGC 1658
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1623 GTTTTCAAGCGAAAAAGGTCAAAAAGTCACCCAAGTAGTCATGAATTTACCAAAAGATGC 1682
Query 1659 CGCTGAATCTCTAGATGCATTTCGCGGAGTATACAGCGATAGAC-CGAGAGATGAAGGCT 1717
|||||||||||||||||||||||||||||||||| |||||| | | |||||||||||||
Sbjct 1683 TGCTGAATCTCTAGATGCATTTCGCGGAGTATACAACGATAGGCAC-AGAGATGAAGGCT 1741
Query 1718 TATCATTCCCAACCATCCATGTTTATGGATTCTCCAAGGCTCCTGATCCAGAATTTGACT 1777
|||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 1742 TATCTTTCCCAACCATCCATGTGTATGGATTCTCCAAGGCTTCTGATCCAGAATTCGACT 1801
Query 1778 TCCACGAGCGGATTCGGATTGCTCTATCTGAAGTGGCCGTGGACGTGAAGATGCGAAAGG 1837
||||||||||||| ||||||||| ||||||| || |||||||| ||||||||||||||||
Sbjct 1802 TCCACGAGCGGATACGGATTGCTTTATCTGAGGTAGCCGTGGATGTGAAGATGCGAAAGG 1861
Query 1838 TACGCCTTGTGGCTCCTGGAAAATGGATGCTTTGTGCTTCATTCATACTTCCCAAGAGTG 1897
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1862 TACGCCTTGTGGCTCCAGGGAAATGGATGCTATGTGCTTCATTCATACTTCCCAAGAATG 1921
Query 1898 TAGCTTTCTCAAGGAAAAACCTAAGTTATGTAGATTAAAAGAAGGCAATATATGGCAGAA 1957
|||| |||||||| |||||| ||||||||||||||||| |||| |||||| ||||| |||
Sbjct 1922 TAGCCTTCTCAAGAAAAAACTTAAGTTATGTAGATTAATAGAATGCAATACATGGCTGAA 1981
Query 1958 TATAGGGGCATATTTGCAAATACGAAATATTTTATTGTACTGCTACTGCAGCCAGTAATA 2017
||||||||||||||||||||||||||||||||||||||||||| | || | |||||||
Sbjct 1982 TATAGGGGCATATTTGCAAATACGAAATATTTTATTGTACTGC-A--GC--C-AGTAATA 2035
Query 2018 CTTGCAGTGTCTTTGTTGAAGAACAAGACAACTAACAAGTGAAAGTGACAATAGCTTTTG 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 CTTGCAGTGTCTTTGTTGAAGAACAAGACAACTAACAAGTGAAAGTGACAATAGCTTTTG 2095
Query 2078 TTACATTATTTAATATTCAAAAAA 2101
||||||||||||||||| ||||||
Sbjct 2096 TTACATTATTTAATATTGAAAAAA 2119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104166130875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5