BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492066 Length=1263 Score E Sequences producing significant alignments: (Bits) Value AT4G27330.1 | Symbols: SPL, NZZ | sporocyteless (SPL) | chr4:13... 1849 0.0 > AT4G27330.1 | Symbols: SPL, NZZ | sporocyteless (SPL) | chr4:13682078-13683538 REVERSE LENGTH=1273 Length=1273 Score = 1849 bits (1001), Expect = 0.0 Identities = 1205/1294 (93%), Gaps = 52/1294 (4%) Strand=Plus/Plus Query 1 CACACTTAAAGCTTTCGTCTTTACCTCTTCACTtctctctctctctctctctAAAAAGAG 60 |||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||| Sbjct 1 CACACTTAAAGCTTTCGTCTTTACCTCTTC-C--CT-TCTCTCTCTCTATCTAAAAAGAG 56 Query 61 TTCCGAGAACAAGATCATCATCAATCAATGGCGACTTCTCTCTTCTTCATGGCAACAGAT 120 ||||||||| ||| |||||| |||||||||||||||||||||||||||| |||||||| Sbjct 57 TTCCGAGAAGAAG---ATCATC-ATCAATGGCGACTTCTCTCTTCTTCATGTCAACAGAT 112 Query 121 CAAAACTCCGTTGGAAACCCAAATGATCTTCTGAGAAACACCCGTCTTGTCGTCAACAGC 180 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 113 CAAAACTCCGTCGGAAACCCAAACGATCTTCTGAGAAACACCCGTCTTGTCGTCAACAGC 172 Query 181 TCCGGCGAGATCCGGACAGAGACACAT-AAGAGTCGTGGTCGGAAACCAGGATCGAAGAC 239 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 173 TCCGGCGAGATCCGGACAGAGACAC-TGAAGAGTCGTGGTCGGAAACCAGGATCGAAGAC 231 Query 240 AGGTCAGCAAAAGCAGAAGAAACCGACGCTGAGAGGAATGGGTGTAGCAAAGCTCGAGCG 299 |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 232 AGGTCAGCAAAAACAGAAGAAACCAACGTTGAGAGGAATGGGTGTAGCAAAGCTCGAGCG 291 Query 300 TCAAAGAATCGAAGAAGAAAAGAAGCAAAT---CGCCGCCACAGTCGGAGAGACG---TC 353 ||| |||||||||||||||||||||||| | |||||||||||||||||| ||| || Sbjct 292 TCAGAGAATCGAAGAAGAAAAGAAGCAACTCGCCGCCGCCACAGTCGGAGACACGTCATC 351 Query 354 AGCAGCTTCGATCTCTAACAACGCTACCCGTTTACCCGTACCCGTAGACCCGGGTGTTGT 413 || ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 352 AGTAGCATCGATCTCTAACAACGCTACCCGTTTACCCGTACCGGTAGACCCGGGTGTTGT 411 Query 414 GCTACAAGGCTTCCCAAGCCCACTCGGAGGATGCAGAAGCAACAGGATCTATTGTGGTGG 473 ||||||||||||||||||| ||||| | | | ||||||||||||||||||||||| Sbjct 412 GCTACAAGGCTTCCCAAGCTCACTC----G--G--G-AGCAACAGGATCTATTGTGGTGG 462 Query 474 AGTCGGGTCGGGTCAGATGATGATCGACCCTGTT-TGTTCTCCATGGGGTTTTGTTGAGA 532 |||||||||||||||| | ||||||||||| ||| | ||||||||||||||||||||||| Sbjct 463 AGTCGGGTCGGGTCAGGTTATGATCGACCCGGTTAT-TTCTCCATGGGGTTTTGTTGAGA 521 Query 533 GCTCCT-C-C-ACTCATGAGCTCTCTTCAATCTCAAATCCTCAAATGTATAACGCTTCTT 589 ||||| | | ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 522 CCTCCTCCACTACTCATGAGCTCTCTTCAATCTCAAATCCTCAAATGTTTAACGCTTCTT 581 Query 590 CCAATAATCGCTGTGACACTTGCTTCAAGAAGAAACGTTTGGATGGTGATCAGAATAATG 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 CCAATAATCGCTGTGACACTTGCTTCAAGAAGAAACGTTTGGATGGTGATCAGAATAATG 641 Query 650 TAGTTCGATCCAACGGTGGTGGGTTTTCGAAATACACAATGATTCCTCCTCCGATGAACG 709 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 642 TAGTTCGATCCAACGGTGGTGGATTTTCGAAATACACAATGATTCCTCCTCCGATGAACG 701 Query 710 GCTACGATCAATATCTTCTTCAACCAGATCATCATCAGAGGAGCCAAGGTTTCCTTTATG 769 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 702 GCTACGATCAGTATCTTCTTCAATCAGATCATCATCAGAGGAGCCAAGGTTTCCTTTATG 761 Query 770 ATCATAGAATCGCTAGATCAGCTTCAGTTTCTGCTTCTAGTACTACTATTAATCCTTATT 829 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 762 ATCATAGAATCGCTAGAGCAGCTTCAGTTTCTGCTTCTAGTACTACTATTAATCCTTATT 821 Query 830 TTAATGAGGCGACAAATCATACGGTACCAATGGAGGAATTTGGGAGCTACATGGAAGGAA 889 | || ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 822 TCAACGAGGCAACAAATCATACGGGACCAATGGAGGAATTTGGGAGCTACATGGAAGGAA 881 Query 890 ACCCTAGAAATGGATCAGGAGGTGTGAAGGAGTACGAGTTTTTTCCGGGAAAATATGGTG 949 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 882 ACCCTAGAAATGGATCAGGAGGTGTGAAGGAGTACGAGTTTTTTCCGGGGAAATATGGTG 941 Query 950 AAAGAGTTTCAGTGGTGGCTACATCGTCATCAGTCATAGGTGATTGCAGTCCTAATACCA 1009 ||||||||||||||||||||| | |||| ||| || |||||||||||||||||||||||| Sbjct 942 AAAGAGTTTCAGTGGTGGCTAAAACGTCGTCACTCGTAGGTGATTGCAGTCCTAATACCA 1001 Query 1010 TTGATTTGTCCTTGAAGCTTTAAATGTTTTATCTTTCTATATTTATTTTAAACAAA-TCG 1068 ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct 1002 TTGATTTGTCCTTGAAGCTTTAAATGTTTTATCTTTCTATATTGATTT-AAACAAAATCG 1060 Query 1069 TCt-ttt------------ttt-AAGTAGATGAAAGTAAGAAACAGAAGaaaaaaaaGAC 1114 ||| ||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 1061 TCTCTTTAAAGAAAAAACATTTTAAGTAGATGAAAGTAAGAAACAGAAGAAAAAAAAGAG 1120 Query 1115 ----CCTTTTTTGGTGTATGCATCTGAGAGCTG-GATCAAAAGAAAGATTCAGCTTTTGG 1169 ||||||||||||||||||||||||||||| | || ||||||||||||||||||||| Sbjct 1121 AGAGCCTTTTTTGGTGTATGCATCTGAGAGCTGAG-TCGAAAGAAAGATTCAGCTTTTGG 1179 Query 1170 ATTACCCTTTTGGTTGTTTATTATGAGATTCTAACCTAAACACTCAGACATATATGTTCT 1229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1180 ATTACCCTTTTGGTTGTTTATTATGAGATTCTAACCTAAACACTCAGACATATATGTTCT 1239 Query 1230 GTTCTCTTCCTTAATTGTTGTCATGAAACTTCTC 1263 |||||||||||||||||||||||||||||||||| Sbjct 1240 GTTCTCTTCCTTAATTGTTGTCATGAAACTTCTC 1273 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62098074165 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5