BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492066
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27330.1 | Symbols: SPL, NZZ | sporocyteless (SPL) | chr4:13... 1849 0.0
> AT4G27330.1 | Symbols: SPL, NZZ | sporocyteless (SPL) | chr4:13682078-13683538
REVERSE LENGTH=1273
Length=1273
Score = 1849 bits (1001), Expect = 0.0
Identities = 1205/1294 (93%), Gaps = 52/1294 (4%)
Strand=Plus/Plus
Query 1 CACACTTAAAGCTTTCGTCTTTACCTCTTCACTtctctctctctctctctctAAAAAGAG 60
|||||||||||||||||||||||||||||| | || ||||||||||| |||||||||||
Sbjct 1 CACACTTAAAGCTTTCGTCTTTACCTCTTC-C--CT-TCTCTCTCTCTATCTAAAAAGAG 56
Query 61 TTCCGAGAACAAGATCATCATCAATCAATGGCGACTTCTCTCTTCTTCATGGCAACAGAT 120
||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 57 TTCCGAGAAGAAG---ATCATC-ATCAATGGCGACTTCTCTCTTCTTCATGTCAACAGAT 112
Query 121 CAAAACTCCGTTGGAAACCCAAATGATCTTCTGAGAAACACCCGTCTTGTCGTCAACAGC 180
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 113 CAAAACTCCGTCGGAAACCCAAACGATCTTCTGAGAAACACCCGTCTTGTCGTCAACAGC 172
Query 181 TCCGGCGAGATCCGGACAGAGACACAT-AAGAGTCGTGGTCGGAAACCAGGATCGAAGAC 239
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 173 TCCGGCGAGATCCGGACAGAGACAC-TGAAGAGTCGTGGTCGGAAACCAGGATCGAAGAC 231
Query 240 AGGTCAGCAAAAGCAGAAGAAACCGACGCTGAGAGGAATGGGTGTAGCAAAGCTCGAGCG 299
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 232 AGGTCAGCAAAAACAGAAGAAACCAACGTTGAGAGGAATGGGTGTAGCAAAGCTCGAGCG 291
Query 300 TCAAAGAATCGAAGAAGAAAAGAAGCAAAT---CGCCGCCACAGTCGGAGAGACG---TC 353
||| |||||||||||||||||||||||| | |||||||||||||||||| ||| ||
Sbjct 292 TCAGAGAATCGAAGAAGAAAAGAAGCAACTCGCCGCCGCCACAGTCGGAGACACGTCATC 351
Query 354 AGCAGCTTCGATCTCTAACAACGCTACCCGTTTACCCGTACCCGTAGACCCGGGTGTTGT 413
|| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 352 AGTAGCATCGATCTCTAACAACGCTACCCGTTTACCCGTACCGGTAGACCCGGGTGTTGT 411
Query 414 GCTACAAGGCTTCCCAAGCCCACTCGGAGGATGCAGAAGCAACAGGATCTATTGTGGTGG 473
||||||||||||||||||| ||||| | | | |||||||||||||||||||||||
Sbjct 412 GCTACAAGGCTTCCCAAGCTCACTC----G--G--G-AGCAACAGGATCTATTGTGGTGG 462
Query 474 AGTCGGGTCGGGTCAGATGATGATCGACCCTGTT-TGTTCTCCATGGGGTTTTGTTGAGA 532
|||||||||||||||| | ||||||||||| ||| | |||||||||||||||||||||||
Sbjct 463 AGTCGGGTCGGGTCAGGTTATGATCGACCCGGTTAT-TTCTCCATGGGGTTTTGTTGAGA 521
Query 533 GCTCCT-C-C-ACTCATGAGCTCTCTTCAATCTCAAATCCTCAAATGTATAACGCTTCTT 589
||||| | | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 522 CCTCCTCCACTACTCATGAGCTCTCTTCAATCTCAAATCCTCAAATGTTTAACGCTTCTT 581
Query 590 CCAATAATCGCTGTGACACTTGCTTCAAGAAGAAACGTTTGGATGGTGATCAGAATAATG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CCAATAATCGCTGTGACACTTGCTTCAAGAAGAAACGTTTGGATGGTGATCAGAATAATG 641
Query 650 TAGTTCGATCCAACGGTGGTGGGTTTTCGAAATACACAATGATTCCTCCTCCGATGAACG 709
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 642 TAGTTCGATCCAACGGTGGTGGATTTTCGAAATACACAATGATTCCTCCTCCGATGAACG 701
Query 710 GCTACGATCAATATCTTCTTCAACCAGATCATCATCAGAGGAGCCAAGGTTTCCTTTATG 769
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 702 GCTACGATCAGTATCTTCTTCAATCAGATCATCATCAGAGGAGCCAAGGTTTCCTTTATG 761
Query 770 ATCATAGAATCGCTAGATCAGCTTCAGTTTCTGCTTCTAGTACTACTATTAATCCTTATT 829
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 ATCATAGAATCGCTAGAGCAGCTTCAGTTTCTGCTTCTAGTACTACTATTAATCCTTATT 821
Query 830 TTAATGAGGCGACAAATCATACGGTACCAATGGAGGAATTTGGGAGCTACATGGAAGGAA 889
| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 822 TCAACGAGGCAACAAATCATACGGGACCAATGGAGGAATTTGGGAGCTACATGGAAGGAA 881
Query 890 ACCCTAGAAATGGATCAGGAGGTGTGAAGGAGTACGAGTTTTTTCCGGGAAAATATGGTG 949
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 882 ACCCTAGAAATGGATCAGGAGGTGTGAAGGAGTACGAGTTTTTTCCGGGGAAATATGGTG 941
Query 950 AAAGAGTTTCAGTGGTGGCTACATCGTCATCAGTCATAGGTGATTGCAGTCCTAATACCA 1009
||||||||||||||||||||| | |||| ||| || ||||||||||||||||||||||||
Sbjct 942 AAAGAGTTTCAGTGGTGGCTAAAACGTCGTCACTCGTAGGTGATTGCAGTCCTAATACCA 1001
Query 1010 TTGATTTGTCCTTGAAGCTTTAAATGTTTTATCTTTCTATATTTATTTTAAACAAA-TCG 1068
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 1002 TTGATTTGTCCTTGAAGCTTTAAATGTTTTATCTTTCTATATTGATTT-AAACAAAATCG 1060
Query 1069 TCt-ttt------------ttt-AAGTAGATGAAAGTAAGAAACAGAAGaaaaaaaaGAC 1114
||| ||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1061 TCTCTTTAAAGAAAAAACATTTTAAGTAGATGAAAGTAAGAAACAGAAGAAAAAAAAGAG 1120
Query 1115 ----CCTTTTTTGGTGTATGCATCTGAGAGCTG-GATCAAAAGAAAGATTCAGCTTTTGG 1169
||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1121 AGAGCCTTTTTTGGTGTATGCATCTGAGAGCTGAG-TCGAAAGAAAGATTCAGCTTTTGG 1179
Query 1170 ATTACCCTTTTGGTTGTTTATTATGAGATTCTAACCTAAACACTCAGACATATATGTTCT 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 ATTACCCTTTTGGTTGTTTATTATGAGATTCTAACCTAAACACTCAGACATATATGTTCT 1239
Query 1230 GTTCTCTTCCTTAATTGTTGTCATGAAACTTCTC 1263
||||||||||||||||||||||||||||||||||
Sbjct 1240 GTTCTCTTCCTTAATTGTTGTCATGAAACTTCTC 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5