BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492068
Length=2445
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27300.1 | Symbols: | S-locus lectin protein kinase family ... 3947 0.0
> AT4G27300.1 | Symbols: | S-locus lectin protein kinase family
protein | chr4:13669308-13672348 REVERSE LENGTH=2448
Length=2448
Score = 3947 bits (2137), Expect = 0.0
Identities = 2346/2448 (96%), Gaps = 9/2448 (0%)
Strand=Plus/Plus
Query 3 GAGAAATACTCATTCTCTGTTTTCGTTATCTCTGTTCTTAATTTCATCATCTTTCTCTGT 62
||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 5 GAGAAAT--TCATTCTCTGTTTTCGTTATCTCTGTTCTTAATTTCATCTTCTCTCTCTGT 62
Query 63 TGCTATGGATTATAGTGTCATTACTCCAAGAGAATTCCTTAAGGATGGAGATACTCTTAG 122
|||| ||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct 63 TGCTTTGGATTATAATGTCATCACTCCAAAAGAATTCCTTAAGGATGGAGATACCCTTAG 122
Query 123 TTCTCCAGACCAGGTTTTCCAACTTGGGTTCTTTAGTCTTGACCAAGATGAGCAGCCTCA 182
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 123 TTCTCCAGACCAGGTTTTCCAACTTGGGTTCTTTAGTCTTGACCAAGAAGAGCAACCTCA 182
Query 183 ACATCGGTTTCTTGGCTTGTGGTACAAGGAACCATTTGCAGTCGTTTGGGTGGCTAACCG 242
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 183 ACATCGGTTTCTTGGCTTGTGGTACATGGAACCATTTGCAGTCGTTTGGGTGGCCAACCG 242
Query 243 AAACAATCCTCTCTACGGCACATCTGGATTCTTAAACTTAAGTTCTCTTGGCGACCTTCA 302
|||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 243 AAACAACCCTCTCTACGGCACATCTGGATTCTTAAACTTGAGTTCCCTTGGCGATCTTCA 302
Query 303 GCTATTCGACGGTGAACACAAAGCCTTGTGG---TCATCATCATCATCAACAAAAGCTTC 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 303 GCTATTCGACGGTGAACACAAAGCCTTGTGGTCATCATCATCATCATCAACAAAAGCTTC 362
Query 360 TAAAACAGCAAATAATCCCCTCTTGAAGATATCATGTTCAGGGAATCTCATATCTAGTGA 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TAAAACAGCAAATAATCCTCTCTTGAAGATATCATGTTCAGGGAATCTCATATCTAGTGA 422
Query 420 CGGAGAAGAAGCTGTATTGTGGCAGAGTTTTGATTATCCCATGAATACAATACTCGCGGG 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CGGAGAAGAAGCTGTGTTGTGGCAGAGTTTTGATTATCCCATGAATACAATACTCGCGGG 482
Query 480 TATGAAGCTT-GGAAAGAATTTCAAGACACAAAAGGAATGGTCTCTATCGTCTTGGAAAA 538
|||||||||| ||||| || ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 483 TATGAAGCTTGGGAAA-AACTTCAAGACACAAATGGAATGGTCTCTATCATCTTGGAAAA 541
Query 539 CCCTAAAAGATCCATCCCCGGGTGACTTCACGATGTCTCTAGATACTCGAGGTTTACCAC 598
|||||||||||||||| || ||||| |||||| |||||||||| ||||||||||||||||
Sbjct 542 CCCTAAAAGATCCATCACCAGGTGATTTCACGTTGTCTCTAGACACTCGAGGTTTACCAC 601
Query 599 AGTTGATCTTGAGGAAGAATGGAGATTCTAGTTATTCCTATCGCTTAGGATCTTGGAACG 658
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 602 AATTGATCTTAAGGAAGAATGGAGATTCGAGTTATTCCTATCGCTTAGGATCTTGGAACG 661
Query 659 GCTTATCCTTCACCGGAGCTCCAGCTATGGGACGAGAGAATAGCTTATTCGACTACAAAT 718
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 662 GCTTATCCTTCACCGGCGCTCCAGCTATGGGACGTGAGAATAGCTTATTCGACTACAAAT 721
Query 719 TCACGTCGAGTGAGCAAGAAGTAAACTACTCGTGGACTCCTCGACGCAGAATTGTCTCAA 778
|||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 722 TCACGTCGAGTGCGCAAGAAGTAAACTACTCGTGGACTCCACGGCACAGAATTGTCTCAA 781
Query 779 GATTGGTCTTAAACAACACAGGGAAACTTCACAGGTTTATCCAGTCTAATCAACACCAAT 838
||||||| |||||||||||||||||||| || |||||||||||||| || ||| |||| |
Sbjct 782 GATTGGTATTAAACAACACAGGGAAACTCCATAGGTTTATCCAGTCGAAGCAAAACCAGT 841
Query 839 GGATCTTAGCAAACACTGCACCAGAAGATGAGTGTGACTACTACTCTATATGTGGAGCTT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GGATCTTAGCAAACACTGCACCAGAAGATGAGTGTGACTACTACTCTATATGTGGAGCTT 901
Query 899 ACGCAGTTTGTGGGATTAATAGCAAAAACACACCTTCTTGTTCATGTTTACAAGGATTCA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 902 ACGCAGTTTGTGGGATTAATAGCAAAAACACACCTTCTTGTTCATGTTTACAAGGGTTCA 961
Query 959 AGCCAAAATCAGGTCGAAAGTGGAATATTTCAAGAGGAGCATACGGGTGTGTCCATGAGA 1018
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AGCCTAAATCAGGTCGAAAGTGGAATATTTCAAGAGGAGCATACGGGTGTGTCCATGAGA 1021
Query 1019 TTCCAACCAATTGCGGAAAGAAAGATGCATTTGTGAAGTTCCCAGGTATGAAACTACCAG 1078
|||||||||| || | |||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 1022 TTCCAACCAACTGTGAAAAGAAAGATGCATTTGTGAAGTTTCCAGGTCTGAAATTACCAG 1081
Query 1079 ATACTTCATGGTCTTGGTATGATGCCAAAAATGAAATGACACTTGAGGATTGTAAGATCA 1138
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1082 ATACTTCATGGTCTTGGTATGATGCAAAAAATGAAATGACACTTGAGGATTGTAAGATCA 1141
Query 1139 AGTGTTCAAGTAACTGCTCTTGCACGGCTTATGCGAATACCGATATTCGCGAGGGAGGAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 AGTGTTCAAGTAACTGCTCTTGCACGGCTTATGCGAATACCGATATTCGCGAGGGAGGAA 1201
Query 1199 AAGGTTGTTTGCTTTGGTTTGGTGACTTGGTTGATATGAGAGAGTATTCTACCTTTGGAC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1202 AAGGTTGTTTGCTTTGGTTTGGTGACTTGGTTGATATGAGAGAGTATTCTAGCTTTGGAC 1261
Query 1259 AAGATGTTTACATAAGAATGGGTATTGCAAAAATAGAGTTTAAAGGAAGAGAAGTGGTGG 1318
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1262 AAGATGTTTACATAAGAATGGGTTTTGCTAAAATAGAGTTTAAAGGAAGAGAAGTGGTGG 1321
Query 1319 GAATGGTCGTTGGATCAGTGGTGGTCA-TTGCAGTTGTTTTGGTTGTAGTGTTTGCATGT 1377
|||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1322 GAATGGTCGTTGGATCGGTGGTGG-CAATTGCAGTTGTTTTGGTTGTAGTGTTTGCATGT 1380
Query 1378 TGCAGAAAGAAGATAATGAAGAGATATCGCGGTGAAAATTTTAGAAAAGGGATTGGGGAA 1437
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 1381 TTCAGAAAGAAGATAATGAAGAGATATCGAGGTGAAAATTTCAGAAAAGGGATTGAGGAA 1440
Query 1438 GAGGACCTGGACTTGCCTATTCTTGACAGAAAAACGATTTCCATAGCCACTGATGATTTT 1497
|||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1441 GAGGACTTGGACTTGCCTATTTTTGACAGAAAAACGATTTCTATAGCCACTGATGATTTT 1500
Query 1498 TCATACGTGAACTTCCTAGGAAGAGGAGGGTTTGGACCAGTTTATAAGGGTAAGTTAGAA 1557
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1501 TCATACGTGAACTTCCTAGGAAGAGGAGGTTTTGGACCAGTTTATAAGGGTAAGTTAGAA 1560
Query 1558 GATGGACAAGAGATTGCGGTGAAGAGGTTATGCGCGAACTCAGGACAAGGAGTGGAAGAA 1617
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1561 GATGGACAAGAGATTGCGGTGAAGAGGTTATCCGCGAACTCAGGACAAGGAGTGGAAGAA 1620
Query 1618 TTCAAGAACGAGGTAAAACTAATCGCAAAACTTCAACATCGTAACCTCGTGAGGCTTTTA 1677
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TTCAAGAACGAAGTAAAACTAATCGCAAAACTTCAACATCGTAACCTCGTGAGGCTTTTA 1680
Query 1678 GGATGTTGTATTCAAGGTGAAGAATGTATGTTGATCTATGAGTATATGCCTAACAAAAGT 1737
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GGTTGTTGTATTCAAGGTGAAGAATGTATGTTGATCTATGAGTATATGCCTAACAAAAGT 1740
Query 1738 TTAGACTTCTTTATCTTTGATGAAAGGAGAAGTAAAGAATTGGATTGGAAGAAGAGAATG 1797
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1741 TTAGACTTCTTTATATTTGATGAAAGGAGAAGTACAGAATTGGATTGGAAGAAGAGAATG 1800
Query 1798 GACATTATCAATGGAATTGCTCGTGGGCTTCTCTATCTTCATCAAGATTCAAGATTGAGG 1857
|||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1801 AACATTATCAATGGAGTAGCTCGTGGGATTCTCTATCTTCATCAAGATTCAAGATTGAGA 1860
Query 1858 ATCATACATAGAGATCTAAAAGCTGGAAATGTTTTACTAGATAATGGTATGAATCCTAAG 1917
||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1861 ATCATACATAGAGATTTAAAAGCTGGAAATGTTTTACTAGATAATGATATGAACCCTAAG 1920
Query 1918 ATCTCAGATTTTGGATTGGCTAAATCTTTTGGGGGAGATCAGAGTGAATCAAGCACAAAC 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 ATCTCAGATTTTGGATTGGCTAAATCTTTTGGGGGAGATCAGAGTGAATCAAGCACAAAC 1980
Query 1978 AGAGTCGTGGGTACTTATGGTTATATGCCTCCGGAGTATGCAATTGATGGACATTTCTCT 2037
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1981 AGAGTCGTGGGTACTTATGGTTACATGCCTCCGGAGTATGCAATTGATGGACATTTCTCT 2040
Query 2038 GTGAAATCTGATGTGTTCAGTTTCGGTGTATTAGTACTTGAGATCATAACTGGCAAGACG 2097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 GTGAAATCTGATGTGTTCAGTTTCGGTGTATTAGTACTTGAGATCATAACTGGCAAGACG 2100
Query 2098 AATCGCGGGTTTCGTCATGCAGATCATGATCTTAATCTCCTTGGACACGTGTGGACAATG 2157
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 2101 AATCGAGGGTTTCGTCATGCAGATCATGATCTTAATCTTCTTGGACACGTGTGGAAAATG 2160
Query 2158 TGGGTTGAAAACAGAGAAATAGAAGTACCAGAGGAAGAGTTGTTGGAAGAGACATGTGTT 2217
||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 2161 TGGGTTGAAGACAGAGAAATAGAAGTACCAGAGGAAGAGTGGTTGGAAGAGACAAGTGTT 2220
Query 2218 GTCCCAGAGGTACTAAGATGTATTCATGTGGCTTTACTTTGTGTTCAACAGAAACCAGAA 2277
|||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 2221 ATCCCAGAGGTACTAAGATGTATTCATGTTGCTTTGCTTTGTGTTCAACAAAAACCAGAA 2280
Query 2278 GACAGACCAACCATGGCTTCTGTTGTCTTGATGTTTGGGAGTGACAGTTCTCTTCCTCAC 2337
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2281 GACAGACCAACCATGGCTTCTGTTGTCTTGATGTTTGGGAGTGATAGTTCTCTTCCTCAC 2340
Query 2338 CCTAAAAAGCCTGGATTTTTCACCAACCGGAACGTTCCAGATATCTCTTCATCTTTAAGC 2397
|||| | |||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2341 CCTACACAGCCCGGTTTTTTCACCAACCGGAACGTTCCTGATATCTCTTCATCTTTAAGC 2400
Query 2398 TTACGTTCACAAAACGAAGTTTCCATCACAATGTTGCAGGGAAGGTAG 2445
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2401 TTACGTTCACAAAACGAAGTTTCCATCACAATGTTGCAGGGACGGTAG 2448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121435118355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5