BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492070
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27280.1 | Symbols: | Calcium-binding EF-hand family protei... 769 0.0
> AT4G27280.1 | Symbols: | Calcium-binding EF-hand family protein
| chr4:13663576-13664240 REVERSE LENGTH=665
Length=665
Score = 769 bits (416), Expect = 0.0
Identities = 521/568 (92%), Gaps = 21/568 (4%)
Strand=Plus/Plus
Query 1 AAACAAACAAACCTTCCTTAATCAGAACCCAATTTCAGATTATTTAAACAACATCGTCGG 60
||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||| | |
Sbjct 18 AAAAAAACAAACCTTCCTTAACCAGAACCAAATTTCAGATT-TTTAAACAACA---TAAG 73
Query 61 CTCTAATGGCGTCACCAAAGTCACCTACAAGACCAACCCAACAAAACCCACAACCCAATT 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 74 CTCTAATGGCGTCACCAAAGTCACCCACAAGACCAACCCAACAAAACCCACAACCCAATT 133
Query 121 TCCACGATTTCCTTCCCGCGATGGCCGGAAACCTAGGCGGTGAGGGTCTGATCGGAGAGC 180
|||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 134 TCCACGATTTTCTTCCTACCATGGCCGGAAACCTAGGCGGTGAAGGTCTGATCGGAGAGC 193
Query 181 TCTGTAACGGATTCGAGCTCTTGATGGACAGAGAGAAAGGTGTCATCACGTTCGAGAGTC 240
| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 194 TATGCAACGGCTTCGAGCTTTTGATGGACAGAGAGAAAGGTGTCATCACGTTCGAGAGTC 253
Query 241 TCCGACGTAACGCAGCGGCGGTTCTGGGTCTCGGAGATTTGACTGATGAAGATGTCCGGT 300
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 254 TCCGACGTAACGCTGCGGCGGTTCTGGGTTTAGGAGATTTGACTGATGAAGATGTCCGGT 313
Query 301 GTATGATTAAAGAAGGGGATTTTGACTGCGACGGTGCGTTGAACCAGATGGAGTTTTGTG 360
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 314 GTATGATTAAAGAAGGTGATTTTGACTGCGACGGTGCGTTGAATCAGATGGAGTTTTGTG 373
Query 361 TGTTGATGTTTAGGCTTAGCCCTGATTTGATGGAGGCGTCGCGGTGTCTCGTCACGGAGG 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 374 TGTTGATGTTTAGGCTTAGCCCTGATTTGATGGAAGCGTCGCGGTGTCTCGTCACGGAGG 433
Query 421 -CGATTGAGGAGGAGTTCGGATTCACGCGCCGGCATTGACACCGGAGAGATTTGGGAG-- 477
| |||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 434 TC-ATTGAGGAGGAGTTTGGCTTCACGCGCCGGCATTGACACTGGAGAGATTTGGGATCC 492
Query 478 -----------ATTTAATTCGATTCATTTGTTACCTTTTTCTTA-TTTT-CCATTAATGT 524
||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 493 CTTCCTCTTTTATTTAATTCGATTCATTTGTTACCTTTTTCTTAATTTTTCCATTAATGT 552
Query 525 TACCATTCACATAATTCTTTGAATCATA 552
|||||||||||||||||||| |||||||
Sbjct 553 TACCATTCACATAATTCTTTTAATCATA 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5