BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492071
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27270.1 | Symbols: | Quinone reductase family protein | ch... 1099 0.0
> AT4G27270.1 | Symbols: | Quinone reductase family protein |
chr4:13661331-13663294 REVERSE LENGTH=796
Length=796
Score = 1099 bits (595), Expect = 0.0
Identities = 663/697 (95%), Gaps = 0/697 (0%)
Strand=Plus/Plus
Query 1 AAAAATCAGAAAAGCTTTGAGAGAATCGAGCGCACTTCTTCAATGGCGACCAAAGTTTAC 60
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 10 AAAAATCAGAAAAGCTTTCAGAGGATCGAGCGCACTTCTTCAATGGCGACCAAAGTTTAC 69
Query 61 ATCGTGTACTACTCGATGTACGGCCATGTGGAGAAATTAGCTCAAGAGATTAGGAAAGGT 120
|| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 70 ATAGTGTACTACTCAATGTATGGTCATGTGGAGAAATTAGCTCAAGAGATTAGGAAAGGT 129
Query 121 GCTGCTTCTGTTGATGGTGTTGAAGCCAAACTCTGGCAGGTACCCGAAACGCTCCAAGAA 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 130 GCTGCTTCTGTTGATGGTGTTGAAGCCATACTCTGGCAGGTACCCGAAACGCTCCAAGAA 189
Query 181 GATGTGCTCTCTAAAATGAGTGCACCGCCAAAGAGTGATGCTCCTATTATCACCCCAAAC 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 190 GATGTGCTCTCTAAAATGAGTGCACCACCAAAGAGTGATGCTCCTATTATCACCCCAAAC 249
Query 241 GAGCTTGCTGAGGCTGATGGATTTGTCTTCGGCTTCCCAACAAGGTTTGGTATGATAGCT 300
||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 250 GAGCTCGCTGAGGCTGATGGATTTATCTTCGGCTTCCCAACGAGGTTTGGTATGATGGCT 309
Query 301 GCTCAGTTCAAAGCATTCTTGGATGCAACCGGCGGCCTTTGGAGGACTCAGCAACTCGCC 360
||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 310 GCTCAGTTCAAGGCATTTTTAGATGCGACCGGCGGCCTTTGGAGGACTCAGCAACTCGCC 369
Query 361 GGTAAGCCAGCCGGGATCTTCTACAGCACAGGGTCCCAAGGTGGTGGTCAAGAAACAACC 420
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 370 GGTAAACCAGCCGGAATCTTCTACAGCACAGGGTCCCAAGGTGGTGGTCAAGAAACCACC 429
Query 421 GCATTAACTGCCATTACTCAGCTGGTCCATCACGGGATGATATTTGTCCCGATTGGTTAC 480
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 430 GCATTAACTGCCATTACTCAGCTGGTTCATCACGGGATGATCTTTGTCCCGATTGGCTAC 489
Query 481 ACATTTGGTGCCGGAATGTTTGAGATGGAGAATGTGAAAGGTGGAAGCCCGTATGGGGCA 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 490 ACATTTGGTGCCGGAATGTTTGAGATGGAAAATGTGAAAGGTGGAAGCCCGTACGGGGCG 549
Query 541 GGAACGTTTGCCGGAGATGGGTCGAGACAGCCAACGGAACTGGAGCTGGAGCAAGCATTT 600
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 550 GGAACATTTGCCGGAGATGGGTCGAGACAGCCAACGGAACTGGAGTTGGGGCAAGCATTT 609
Query 601 CACCAAGGGAAGTACATAGCCGCCATAAGCAAGAAGCTCAAGGGACCTGCTGCTACTTAG 660
||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||
Sbjct 610 CACCAAGGGAAGTACATTGCCGCCATAAGTAAGAAGCTCAAGGGACCTGCTGCTGCTTAG 669
Query 661 AGCTCTCTCAAAAAGATAATATTTTGATGCCTTGTTG 697
||||||||||| |||||||||||||||| | ||||||
Sbjct 670 AGCTCTCTCAATAAGATAATATTTTGATTCTTTGTTG 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33757346784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5