BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492075
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27230.1 | Symbols: HTA2 | histone H2A 2 | chr4:13637288-136... 749 0.0
AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily... 473 7e-133
AT5G02560.2 | Symbols: HTA12 | histone H2A 12 | chr5:575382-576... 62.1 6e-09
> AT4G27230.1 | Symbols: HTA2 | histone H2A 2 | chr4:13637288-13638419
REVERSE LENGTH=717
Length=717
Score = 749 bits (405), Expect = 0.0
Identities = 530/585 (91%), Gaps = 30/585 (5%)
Strand=Plus/Plus
Query 38 TCTTGGGTAGT----AGAAATGGCGGGTCGGGGAAAACAACTAGGATCTGGTGCGGCGAA 93
||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 76 TCTTGGGTAGTAGAGAGAAATGGCGGGTCGGGGAAAACAACTTGGATCTGGTGCAGCGAA 135
Query 94 GAAGTCTACTTCTCGTAGTAGCAAGGCTGGGCTTCAATTCCCAGTGGGTCGTATCGCTCG 153
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 136 GAAGTCTACTTCTCGTAGTAGCAAGGCTGGGCTTCAATTCCCTGTTGGTCGTATCGCTCG 195
Query 154 ATTTTTGAAAGCCGGTAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGC 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 ATTTTTGAAAGCCGGTAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGC 255
Query 214 CGCCGTTCTTGAATACCTCGCCGCCGAGGTTCTTGAGCTAGCTGGGAACGCAGCAAGAGA 273
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 256 CGCCGTTCTTGAATACCTCGCCGCTGAGGTACTTGAGCTTGCTGGGAACGCAGCGAGAGA 315
Query 274 TAACAAGAAGACCCGTATAGTTCCTCGACACATTCAGCTTGCTGTGAGGAACGATGAGGA 333
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 316 CAACAAGAAGACCCGTATAGTTCCACGACACATTCAGCTTGCTGTGAGGAATGATGAGGA 375
Query 334 ACTAAGCAAGCTACTTGGAGATGTGACAATTGCTAATGGAGGAGTGATGCCTAACATCCA 393
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GCTAAGCAAGTTGCTTGGAGATGTGACAATTGCTAATGGAGGAGTGATGCCTAACATCCA 435
Query 394 CAATCTCCTTCTCCCTAAGAAGTCTGGTCCCTCCAAGCCTACTGA-G--GA--AG----A 444
||||||||||||||| |||||| ||||| | || ||||||||||| | || || |
Sbjct 436 CAATCTCCTTCTCCCCAAGAAGGCTGGTTCATCTAAGCCTACTGAAGAAGATTAGGTTCA 495
Query 445 TTA-G--G---G--AAAGCTGGAAAATGGTTGATATCAGATAATGGTTAGGACTGttttt 496
||| | | | ||||||||||| ||||||||||||||||||| |||||| | |
Sbjct 496 TTACGAAGATAGGGAAAGCTGGAAACTGGTTGATATCAGATAATGCTTAGGA-T-T---- 549
Query 497 gttttttttttttttATTTGCTTTTCCTCTGCAGCAATGGAAGCTGTGTGGTTGTACTAG 556
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GTTTTTTTTTTC---ATTTGCTTTTCCTCTGCAGCAATGGAAGCTGTGTGGTTGTACTAG 606
Query 557 TTGTTAAGGATAACTTTGTTTCACTTTGTGTGAATATATGAAGAA 601
||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 607 TTGTTAAGGTTACCTTTGTTTCACTTTATGTGAATATATGAAGAA 651
> AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily
protein | chr5:22196477-22197492 FORWARD LENGTH=669
Length=669
Score = 473 bits (256), Expect = 7e-133
Identities = 355/402 (88%), Gaps = 9/402 (2%)
Strand=Plus/Plus
Query 51 AAATGGCGGGTCG-GGGAAAACAACTAGGATCTGGTGCGGCGAAG-AAGTCTACTTCTCG 108
||||||| ||||| || ||||| || ||||| |||| ||||||| ||| |||| |||||
Sbjct 62 AAATGGCTGGTCGTGGAAAAAC-TCTTGGATCCGGTGGGGCGAAGAAAG-CTACATCTCG 119
Query 109 TAGTAGCAAGGCTGGGCTTCAATTCCCAGTGGGTCGTATCGCTCGATTT-TTGAAAGCCG 167
|||||||| || || ||||||||||| ||||||||||||||||| ||| || |||||||
Sbjct 120 GAGTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAAAAGCCG 178
Query 168 GTAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGCCGCCGTTCTTGAAT 227
|||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 179 GTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCCGCCGTTCTCGAAT 238
Query 228 ACCTCGCCGCCGAGGTTCTTGAGCTAGCTGGGAACGCAGCAAGAGATAACAAGAAGACCC 287
| | ||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct 239 ATTTGGCCGCCGAGGTTCTTGAATTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACAC 298
Query 288 GTATAGTTCCTCGACACATTCAGCTTGCTGTGAGGAACGATGAGGAACTAAGCAAGCTAC 347
|||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||| |
Sbjct 299 GTATTGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGCTTC 358
Query 348 TTGGAGATGTGACAATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTCC 407
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTCC 418
Query 408 CTAAGAAGTCTGGTCCCTCCAAGCCTACTGAGGAAGATTAGG 449
|||||||| ||||| | || |||||| | ||||||||||||
Sbjct 419 CTAAGAAGGCTGGTGCTTCAAAGCCT-C--AGGAAGATTAGG 457
> AT5G02560.2 | Symbols: HTA12 | histone H2A 12 | chr5:575382-576605
FORWARD LENGTH=738
Length=738
Score = 62.1 bits (33), Expect = 6e-09
Identities = 58/70 (83%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 180 AGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGCCGCCGTTCTTGAATACCTCGCCGCCG 239
||||||| || |||||||||||||||||||||||||||| || || || || || || |
Sbjct 207 AGCGTGTCGGAACCGGAGCTCCGGTCTATCTCGCCGCCGTCCTCGAGTATCTTGCTGCTG 266
Query 240 AGG-TTCTTG 248
|| ||||||
Sbjct 267 AGAATTCTTG 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28934868672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5