BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492076
Length=2868
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27190.1 | Symbols: | NB-ARC domain-containing disease resi... 3747 0.0
> AT4G27190.1 | Symbols: | NB-ARC domain-containing disease resistance
protein | chr4:13620977-13623934 REVERSE LENGTH=2958
Length=2958
Score = 3747 bits (2029), Expect = 0.0
Identities = 2327/2472 (94%), Gaps = 16/2472 (1%)
Strand=Plus/Plus
Query 396 AGATGGTTTGATAAGCGATAAAACCCAAAAGATTGGTGTTTGGGGCATGGGAGGAGTAGG 455
|||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 468 AGATGGCTTGACAAGCGAGAAAGCCCAAAAGATTGGTGTTTGGGGCATGGGAGGAGTAGG 527
Query 456 AAAAACGACATTGGTCAGGACGTTGAACAACAAGCTTCGGGAAGAGGCTGCTACTCAACC 515
||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||
Sbjct 528 TAAAACGACATTGGTCAGGACGCTGAACAATAAGCTTCGGGAAGAGGGTGCTACTCAACC 587
Query 516 ATTTGGCTTGGTGATCTTTGTAATAGTTTCGAAAGAGTTTGATCCAAAAGGAGTCCAAAA 575
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 588 ATTTGGCTTGGTGATCTTTGTAATAGTTTCCAAAGAGTTTGATCCAAGAGAAGTCCAAAA 647
Query 576 GCAGATTGCGGAGAGACTGGATATCGACACCCAAATGGAAGAAAGTGAAGAGAAGTTGGC 635
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 648 GCAGATTGCGGAGAGACTGGATATTGATACCCAAATGGAAGAAAGTGAAGAGAAGTTGGC 707
Query 636 AAGAAGGATTTATGTTGGACTGATGAAAGAGAGAAACTTTCTTCTCATTCTTGATGACGT 695
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 708 AAGAAGGATTTATGTTGGACTGATGAAAGAGAGAAAGTTTCTTCTCATTCTTGATGACGT 767
Query 696 TTGGAAACCCATTGATTTGGATCTTTTGGGCATTCCACGAAGGGAAGAGAATAAAGGTTC 755
||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||||||||
Sbjct 768 TTGGAAACCCATTGATTTGGATCTTTTAGGCATCCCACGAACTGAAGAGAACAAAGGTTC 827
Query 756 AAAAGTCATTCTGACTTCCAGGTTTTTAGAGGTTTGTCGCAGCATG-AGAACAGATCTTG 814
|||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||
Sbjct 828 AAAAGTCATTCTGACTTCGAGGTTTTTAGAGGTCTGTCGCAGCATGAAG-ACAGATCTTG 886
Query 815 ATGTTAGAGTGGACTGCTTACTTGAAGAAGACGCTTGGGAATTGTTTTGCAGAAATGCAG 874
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 887 ATGTTAGAGTGGATTGCTTACTTGAAGAAGACGCTTGGGAATTGTTTTGCAAAAATGCAG 946
Query 875 GGGATGTTGTGAAGTCAGACCATGTTAGGTCA-ATTGCAAAAGCCGTTTCACTTGAGTGT 933
|||||||||||| |||||||||||||||| | ||||||||||| ||||||| || |||
Sbjct 947 GGGATGTTGTGAGGTCAGACCATGTTAGG-AAGATTGCAAAAGCTGTTTCACAAGAATGT 1005
Query 934 GGTGGATTGCCTCTGGCTATCATCACAGTCGGAACAGCTATGCGGGG-AAGTAAAAATGT 992
|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1006 GGTGGATTGCCTCTTGCTATCATCACAGTCGGAACAGCTATGCGGGGAAAG-AAAAATGT 1064
Query 993 CAAGCTGTGGAATCATGTCTTGAGTAAGCTAAGTAAATCAGTACCTTGGATCAAAAGCAT 1052
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1065 CAAGCTATGGAATCATGTCTTGAGTAAGCTAAGTAAATCAGTACCTTGGATCAAGAGCAT 1124
Query 1053 TGAAGAGAAGATCTTCCAGCCATTGAAATTGAGCTACGATTTTTTGGAAGGCAAGGCAAA 1112
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1125 TGAAGAGAAGATCTTCCAGCCATTGAAATTGAGCTACGATTTCTTGGAAGACAAGGCAAA 1184
Query 1113 GTTTTGTTTTCTCCTTTGTGCTTTGTTTCCTGAAGACTACTCTATTGAAGTTTCAGAGCT 1172
|||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| |
Sbjct 1185 GTTTTGTTTTCTCCTTTGTGCTTTGTTTCCAGAAGACTACTCGATTGAAGTTACAGAGGT 1244
Query 1173 TGTAAGATATTGGATGGCTGAAGGATTCATGGAGGAACAAGGTTCCCAAGAGGAATCCAT 1232
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1245 TGTAAGATATTGGATGGCTGAAGGATTCATGGAGGAACTCGGTTCCCAAGAGGACTCCAT 1304
Query 1233 GAACGAGGGAATCGCAATTGTGGAGAGTTTAAAGGATTATTGTTTGTTAGAAGATGGTGC 1292
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GAACGAGGGAATCACAACTGTGGAGAGTTTAAAGGATTATTGTTTGTTAGAAGATGGTGA 1364
Query 1293 TCGTAGAGACACGGTTAAGATGCACGATGTTGTCCGTGATTTTGCCATATGGATCATGTC 1352
||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1365 TCGTAGAGACACGGTGAAGATGCATGATGTTGTCCGCGATTTCGCCATATGGATCATGTC 1424
Query 1353 TTCCTCACAAGATGATTGCCATTCCCTTGTCATGTCTGGTACAGGTTTGCAAGATATTAG 1412
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 1425 TTCCTCACAAGATGATTCCCATTCCCTTGTCATGTCTGGAACGGGTTTGCAAGATATTAG 1484
Query 1413 ACAAGATAAGTTTGTTTCTTCTCTTGGAAGGGTTTCTTTGATGAACAATAAACTAGAAAG 1472
|||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1485 ACAAGATAAGCTTGCTCCTTCTCTTCGAAGGGTTTCTTTGATGAACAATAAACTAGAAAG 1544
Query 1473 CCTTCCTGATCTCGCAGAAGAG-TCATGCGTCAAAACCTCAACCTTACTGCTACAAGGAA 1531
|||||||||||| | ||||||| || ||||| ||||||||| ||||||||||||||| |
Sbjct 1545 CCTTCCTGATCTTGTAGAAGAGTTC-TGCGTAAAAACCTCAGTCTTACTGCTACAAGGCA 1603
Query 1532 ACTCTCTTCTAAAGGAAGTACCCATTGGATTCTTGCAAGCATTTCCAGCTCTTCGAATCT 1591
| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1604 ATTTTCTTCTAAAGGAAGTACCCATTGGATTCTTGCAAGCATTTCCAACTCTTCGAATCT 1663
Query 1592 TGAATCTAAGTGGGACTCGCATTAAGTCATTTCCAAGTTGCTCTCTTTTGCGTCTTTCCA 1651
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 1664 TGAATCTAAGTGGGACTCGCATTAAGTCATTTCCCAGTTGCTCTCTTTTGCGCCTTTTCA 1723
Query 1652 GTCTTCATTCTCTCTTCTTAAGAGAATGTTTTAACCTTGTAG-AACTACCTTCACTAAAA 1710
|||| |||||||||||||||||||| |||||||| ||||| | |||||||||||||| ||
Sbjct 1724 GTCTCCATTCTCTCTTCTTAAGAGATTGTTTTAAACTTGT-GAAACTACCTTCACTAGAA 1782
Query 1711 ACCTTTGCCAAACTTGAGCTACTTGATCTCTGTGGCACACATATCCACGAATTTCCAAGA 1770
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1783 ACCCTTGCCAAACTTGAGCTACTTGATCTCTGTGGCACACATATCCTCGAATTTCCAAGA 1842
Query 1771 GGGTTGGAAGAATTAAAGAGCTTCAGACACCTTGACCTTTCACGAACACTTCACCTTGAA 1830
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1843 GGGTTGGAAGAATTAAAGAGATTCAGACACCTTGATCTTTCACGAACACTTCACCTTGAA 1902
Query 1831 AGCATTCCAGCGAGAGTTGTTTCGCGGTTATCAAGCTTGGAGACACTCGACATGACATCA 1890
||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||
Sbjct 1903 AGCATTCCAGCTAGAGTTGTTTCGAGGTTATCAAGTTTGGAGACACTTGACATGACGTCA 1962
Query 1891 AGTCATTACCGCTGGAGCGTGCAGGAAGAAACACAAAAGGGGCAAGCAACAGTTGAAGAG 1950
||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 1963 AGTCACTACCGCTGGAGCGTACAGGGAGAAACACAAAAAGGGCAAGCAACAGTTGAAGAG 2022
Query 1951 ATAGGATGCCTCCAGCGTTTACAGGTTCTTTCTATTAGGCTCCATTCTTCTCCGTTTCTT 2010
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 2023 ATAGGATGCCTCCAGCGTTTACAGGTTCTTTCCATCAGGCTCCATTCTTCTCCATTTCTT 2082
Query 2011 TTAAATAAGAGAAACACTTGGATCAAAAGATTGAAGAAATTTCAACTTGTCGTTGGCTCT 2070
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 2083 TTAAATAAGAGAAACACTTGGATCAAAAGATTGAAGAAATTCCAACTTGTAGTTGGGTCT 2142
Query 2071 CCTTACATTTCGCGTACAAGACACGACAAGAGGAGGCTAACAATAAGTCACCTCAACGTA 2130
| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2143 CGTTACATTTTGCGTACAAGGCACGACAAGAGGAGGCTAACAATAAGTCACCTCAACGTA 2202
Query 2131 TCACAAGTATCCATCGGGTGGCTGTTGGCTTATACAACCTCTTTAGCACTAAACCATTGT 2190
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 2203 TCACAAGTATCCATCGGGTGGCTGTTGGCTTATACAACATCTCTAGCACTAAACCATTGT 2262
Query 2191 AAGGGGATCGAAGCAATGATGAAGAAATTGGTGATTGACAACA-GGAGTTTCAAGAATTT 2249
||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||
Sbjct 2263 CAGGGGATCGAAGCAATGATGAAGAAATTGGTAAGTGACAACAAGG-GTTTCAAGAATTT 2321
Query 2250 GAAATCTCTGACGATTGAGAACGCTT-TCATCAATACAAATTCTTGGGTTGAGATGGTAA 2308
||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||
Sbjct 2322 GAAATCTCTGACGATTGAGAACG-TTATCATCAATACGAATTCTTGGGTTGAGATGGTAA 2380
Query 2309 ACACTAAAACTTCAAAACAATCCTCTGACAGGCTAGACCTTCTTCCAAATTTGGAGGAAC 2368
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2381 GCACTAACACTTCAAAACAATCCTCTGACATACTAGACCTTCTTCCAAATTTGGAGGAAC 2440
Query 2369 TTCATCTGCGTCGTGTTGACTTGGAAACCTTCTCAGAACTACAAACACATCTCGGGTTGA 2428
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2441 TTCATCTGCGTCGTGTTGACTTGGAAACCTTCTCAGAGCTACAAACACATCTCGGGTTGA 2500
Query 2429 GGCTGCAAACACTGAAGATAATCGAGATCACCATGTGTCGCAAGCTTCGAACACTACTCG 2488
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2501 AACTGGAAACACTGAAGATAATCGAGATCACCATGTGTCGCAAGCTTCGAACACTACTCG 2560
Query 2489 GCAAAAGAAACTTCTTGACTATCCCAAAACTGGAGGAGATAGAGATTAGCTACTGCGACT 2548
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2561 ACAAAAGAAATTTCTTGACTATCCCAAACCTGGAGGAGATAGAGATTAGCTACTGCGACT 2620
Query 2549 CATTGCAGAATCTACACAAGGCTTTGATATACCATGAACCTTTCCTACCAAATTTACGTG 2608
| ||||||||||||||| |||||||| |||||||| |||||||| |||||||| ||||||
Sbjct 2621 CTTTGCAGAATCTACACGAGGCTTTGTTATACCATCAACCTTTCGTACCAAATCTACGTG 2680
Query 2609 TCTTGAAACTGAGAAATCTTCCAAATCTTGTGAGTATATGCAACTGGGGAGAGGCTTGGG 2668
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2681 TCTTGAAACTGAGAAATCTTCCAAATCTTGTGAGTATATGCAACTGGGGAGAGGTTTGGG 2740
Query 2669 AATGCCTGGAACAAGTGGAAGTGATTCACTGTAATCAGCTGAATTGTTTACCCATAAGCT 2728
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2741 AATGCTTGGAACAAGTGGAAGTGATTCACTGTAATCAGCTGAATTGTTTACCCATAAGCT 2800
Query 2729 CTACATGTGGAAGAATCAAGAAAATAAAAGGAGAATCGAGTTGGTGGGAGCGTTTGGAAT 2788
|||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2801 CTACCTGTGGAAGAATCAAGAAGATAAAAGGAGAATTGAGTTGGTGGGAGCGTTTGGAAT 2860
Query 2789 GGGACGATCCCTCTACTTTAGCCACTGTTCGACCTTTTTTCAATCCAGTGGACG-AATTT 2847
|||||||||||||| ||||| ||||||||| ||| ||||||||||||||| | | || ||
Sbjct 2861 GGGACGATCCCTCTGCTTTAACCACTGTTCAACCATTTTTCAATCCAGTG-AGGGAAGTT 2919
Query 2848 CCTCTGCTTATA 2859
||||| || |||
Sbjct 2920 CCTCTACTCATA 2931
Score = 566 bits (306), Expect = 5e-160
Identities = 344/363 (95%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTGTTTAGCCCCTGTCATTGGTGAGACTTTGCGTTTGATGTACGTCTCAACGTTC 60
|||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 1 ATGGAGTGTTGCGCCCCTGTCATTGGTGAGATTTTGCGTTTGATGTATGAGTCAACGTTC 60
Query 61 TCAAGAGTCGCTAATGCAATAAAGTTCAAATCAAACGTCAAAGCTCTTAATGATTCACTC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TCAAGAGTCGCTAATGCCATAAAGTTCAAATCAAACGTCAAAGCTCTTAATGAATCACTC 120
Query 121 GAGAGATTGACAAAGCTTAAGGGTAACATGAGTGAAGATCATGAAACTTTGCTGACCAAA 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGAGATTGACAGAGCTTAAGGGTAACATGAGTGAAGATCATGAAACTTTGCTGACCAAA 180
Query 181 GATAAACCCTTGAGACTCAAGCTAATGCGTTGGCAAAGAGAAGCAGAAGAAGTTATCTCT 240
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 181 GATAAACCCTTGAGACTCAAGCTAATGCGTTGGCAAAGAGAGGCGGAAGAAGTTATATCT 240
Query 241 AAAGCAAGGTTAAAACTTGAGGAACGGGTTTCATGTGGTATGTCATTGAGATCTAGGATG 300
|||||||||||||||||||||||||| |||||||| |||||||| |||||| | ||||||
Sbjct 241 AAAGCAAGGTTAAAACTTGAGGAACGAGTTTCATGCGGTATGTCCTTGAGACCCAGGATG 300
Query 301 AGTAGGAAACTTGTCAAGATTCTCGATGAAGTGAAAATGCTTGAGAAGGATGGCAGAGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 301 AGTAGGAAACTTGTCAAGATTCTCGATGAAGTGAAAATGCTTGAGAAGGATGGAATAGAG 360
Query 361 TTT 363
|||
Sbjct 361 TTT 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142524285063
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5