BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492082
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27130.1 | Symbols: | Translation initiation factor SUI1 fa... 985 0.0
> AT4G27130.1 | Symbols: | Translation initiation factor SUI1
family protein | chr4:13604558-13606448 REVERSE LENGTH=848
Length=848
Score = 985 bits (533), Expect = 0.0
Identities = 617/657 (94%), Gaps = 7/657 (1%)
Strand=Plus/Plus
Query 57 AACAGAAGTTGCAGACTTTATCCGAATTTAGGGTTTCATCAGCTCGTTCTCTCTTCTCCG 116
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 114 AACAGAAGTTGCAGACTTTATCCGAATTTAGGG-TT--TCAGCTCGTTCTCTCTTCTCCA 170
Query 117 ATTATCAGATCCACGAAACTCTAATTTTCGGATCAGGTCTCAGCTTCTCTATCGTTTGCC 176
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 171 ATTATCAGATCCACGAAACTCTACTTTTCGGATCAGGTCTCAGCTTCTCTATCGTTTGCC 230
Query 177 CCTCAGATCAACAAAGTTTCATGTCTGAACTTGATTCCCAGGTCCCTACTGCCTTTGACC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 231 CCTCAGATCAACAAAGTTTCATGTCTGAACTTGATTCCCAGGTCCCTACTGCCTTCGACC 290
Query 237 CGTTTGCTGATGCGAATGCTGAGGACTCAGGTGCAGGAACAAAGGAGTACGTTCACATTC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 291 CGTTTGCTGATGCGAATGCTGAGGACTCAGGTGCAGGAACAAAGGAGTACGTTCATATTC 350
Query 297 GTGTCCAGCAGCGGAATGGTAGGAAAAGCTTGACAACGGTCCAGGGGCTAAAGAAAGAGT 356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 351 GTGTCCAGCAGCGGAATGGTAGGAAAAGCTTGACAACGGTCCAGGGGCTGAAGAAAGAGT 410
Query 357 ACAGCTACAGCAAGATACTTAAGGACCTCAAGAAAGAATTTTGCTGCAACGGAACTGTGG 416
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 ACAGCTACACCAAGATACTTAAGGACCTCAAGAAAGAATTTTGCTGCAACGGAACTGTGG 470
Query 417 TTCAGGACTCAGAGCTCGGACAGGTTATTCAGCTTCAAGGCGATCAGAGGAAGAACGTCT 476
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TTCAAGACTCAGAACTCGGACAGGTTATTCAGCTTCAAGGCGATCAGAGGAAGAACGTCT 530
Query 477 CCACTTTCCTAGTCCAGGCTGGCCTTGTGAAGAAAGATAACATCAAGATCCATGGTTTCT 536
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 531 CCACGTTCCTAGTCCAGGCTGGGCTTGTGAAGAAAGATAACATCAAGATCCATGGTTTCT 590
Query 537 GAGCTGCTTCTGTTGCATTGTCCC-TAGGACGTTTAAGTGGATCGTTACTGTGTTGTGCA 595
|||| |||||||||||||| |||| |||| |||||||||||||| ||||| | | |||||
Sbjct 591 GAGCAGCTTCTGTTGCATT-TCCCGTAGGCCGTTTAAGTGGATCATTACTCTATCGTGCA 649
Query 596 GTTCCAAAACAAATCTTCACCTTTCTCTTTGATTGCTTGTTGGT-GATTTTTGTTATATC 654
||| ||||||| ||||||||||||| ||| |||| |||||| | | ||| |||| || |
Sbjct 650 GTTACAAAACATATCTTCACCTTTCCCTTCGATTACTTGTTACTTG-TTTCTGTTTTAGC 708
Query 655 TTTGGTATGATACTAAGAGACTATCATCGTCTTCTTCCACATGCTACTTGTGTAATA 711
|||| ||||||||||||||| |||||||| ||||| |||||| ||||| |||||||
Sbjct 709 GTTGGAATGATACTAAGAGACCATCATCGTTTTCTTTCACATGTTACTTCTGTAATA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369522428
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5