BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492087
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27100.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2242 0.0
> AT4G27100.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr4:13595561-13598565 FORWARD LENGTH=1626
Length=1626
Score = 2242 bits (1214), Expect = 0.0
Identities = 1321/1373 (96%), Gaps = 6/1373 (0%)
Strand=Plus/Plus
Query 187 tttttttCCCGGGAAAAAAGTTTGATAGA-ATGTGGGGAGGCGCAGCTGAGCCAGCAGAT 245
||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 258 TTTTTTTCCCGGG---AAAGTTTGATAGAGATGTGGGGAGGCGCAGGTGAGCCAGCAGAT 314
Query 246 TCTTATTACCAAGTTCGTCCCGAGTGCACCGATGTCCCCAAGACCAGATTCAGAATCAAG 305
||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 315 TCTTACTACCAAGTTCGTCCTGAGTGCACCGATGTCCCCAAGACCAGATTCAAAATCAAG 374
Query 306 CCTGGCAAAACTCTAAGTGTAAGAAAATGGCAGTCTGTATTTGTACAAGAAGGGTCTCTT 365
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 375 CCTGGTAAAACTCTAAGTGTAAGAAAATGGCAGGCTGTATTTGTACAAGAAGGGTCTCTC 434
Query 366 GATATTGGCAAGACTCTAAGACGAATCCGAAGAGGGGGAATCCATCCATCAATTAGAGGC 425
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 435 CATATTGGCAAGACTCTAAGACGCATCCGAAGAGGGGGAATCCATCCATCAATTAGAGGC 494
Query 426 GAAGTATGGGAATTCCTACTTGGTTGTTATGACCCGATGAGCACATTCGAAGAAAGAGAG 485
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 495 GAAGTATGGGAATTCCTACTTGGTTGTTATGACCCAATGAGCACATTCGAAGAAAGAGAG 554
Query 486 CAAATTCGGCAACGCAGAAGACTGCAGTATGCTTCTTGGAAGGAGGAGTGTAAGCAAATG 545
|||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 555 CAAATTCGACAACGCAGAAGATTGCAGTATGCTTCTTGGAAGGAAGAGTGTAAGCAAATG 614
Query 546 TTTCCTGTCATTGGAAGTGGAAGATTTA-TGACCGCACCTGTAATTTCTGAAAATGGCCA 604
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||
Sbjct 615 TTTCCTGTCATTGGAAGTGGAAGATTTACT-ACCGCACCTGTAATTACTGAAAATGGTCA 673
Query 605 ACCCAACTATGATCCTCTTGTACTTCAGGAAATAAATTTAGGTACAAACTCAAATGGTTC 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 ACCCAACTATGATCCTCTTGTACTTCAGGAAATAAATTTAGGTACAAACTCAAATGGTTC 733
Query 665 AGAtttttttAAAGAGCTCACAAGTCGTGGACCTCTCGATAAGAAAGTTACCCAGTGGCT 724
|| ||||||||||||||||||||||||||||||||| ||||| ||| ||| ||| |||||
Sbjct 734 AGTTTTTTTTAAAGAGCTCACAAGTCGTGGACCTCTTGATAAAAAAATTATCCAATGGCT 793
Query 725 GCTAACACTTCACCAGATAGGTCTTGATGTGAACCGTACAGACAGGGCCTTGGTATTTTA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GCTAACACTTCACCAGATAGGTCTTGATGTGAACCGTACAGACAGGGCCTTGGTATTTTA 853
Query 785 TGAGAAAAAGGAGAACTTATCGAAGCTCTGGGATATTCTGTCTATTTACGCCTGGATAGA 844
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 854 TGAGAAAAAGGAGAACTTATCGAAGCTCTGGGATATTCTGTCTGTTTACGCCTGGATAGA 913
Query 845 CAACGATGTCGGGTATTGTCAAGGAATGAGTGATCTTTGTTCCCCAATGATTATTCTTCT 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 CAACGATGTCGGGTATTGTCAAGGAATGAGTGATCTTTGTTCCCCAATGATTATTCTTCT 973
Query 905 TGAAGATGAAGCTGATGCCTTTTGGTGTTTTGAACGGCTTATGCGTCGATTGCGAGGAAA 964
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 974 TGAAGACGAAGCTGATGCATTTTGGTGTTTTGAACGGCTCATGCGTCGATTGCGAGGAAA 1033
Query 965 TTTCCGTAGCACCGGGAGATCTGTTGGAGTTGAAGCTCAACTTACTCATTTGTCTACGAT 1024
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1034 TTTCCGTAGTACCGGGAGATCTGTTGGAGTTGAAGCTCAACTTACTCATTTGTCTTCAAT 1093
Query 1025 TACTCAGATTGTTGACCCCAAACTTCACCAACATCTAGATAAACTGGGGGGAGGCGACTA 1084
||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1094 TACTCAGGTTGTTGACCCCAAACTTCACCAACATCTAGATAAACTTGGGGGAGGTGACTA 1153
Query 1085 TCTCTTTGCCATTCGGATGCTAATGGTTCAATTCCGAAGAGAATTCTCGTTTTGCGACTC 1144
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1154 TCTCTTTGCCATCCGGATGCTAATGGTTCAATTCCGAAGAGAATTCTCATTTTGCGACTC 1213
Query 1145 TCTGTACCTTTGGGAGATGATGTGGGCCCTCGAGTATGACCCCGATCTTTTTTATGTATA 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TCTGTACCTTTGGGAGATGATGTGGGCCCTCGAGTATGACCCCGATCTTTTTTATGTATA 1273
Query 1205 TGAGGCACATCAATGCGGGAGTGAGAAAACCGAAGGGTTAAAAGGTAAACCGAAGTCAAT 1264
|||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1274 TGAGGCGCATCAATGCGGGAATGAGAAAACAGAAGGGTTAAAAGGTAAACCGAAGTCAAT 1333
Query 1265 TAAGCAATGTGGAAAGTATGAGAGGCAAAACATGAGGAATGGAGGGAAAAGTGCGGAAGG 1324
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1334 TAAGCAATGTGGAAAGTATGAGAGGCAAAACATGAGGAATGGAGGAAAAAGTGCAGAAGG 1393
Query 1325 TCCTTTGCCTATATCGGTATTTCTAGTGGCCAGTGTCTTGAAAGACAAGAGTTATAAGCT 1384
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 TCCTTTACCTATATCGGTATTTCTAGTGGCCAGTGTCTTGAAAGACAAGAGTTATAAGCT 1453
Query 1385 AATGACTGAAGCTCGTGGACTCGACGATGTTGTTAAGATACTTAACGACATGACTGGGAA 1444
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1454 AATGACTGAAGCTCGTGGACTCGACGATGTTGTTAAGATACTTAACGATACGACTGGGAA 1513
Query 1445 CTTGGATGCCAAGAAAACATGTTCTGGGGCCATAAAAATTCACAAGAGATATCTAAGAAA 1504
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1514 CTTGGATGCCAAAAAAACATGTTCTGGAGCCATAAAAATTCACAAGAGATATCTAAGAAA 1573
Query 1505 GGTTATTTCTATGtttttttGATCTGTCTGGGCTTGTGTCTCTCTCAAAGTTT 1557
|||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 1574 GGTTATTTCTATGTTTCTTTGATCTGCCTGGGCTTCTGTCTCTCTCAAAGTTT 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5