BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492088
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27090.1 | Symbols: | Ribosomal protein L14 | chr4:13593905... 1096 0.0
AT2G20450.1 | Symbols: | Ribosomal protein L14 | chr2:8813862-... 438 3e-122
> AT4G27090.1 | Symbols: | Ribosomal protein L14 | chr4:13593905-13595252
REVERSE LENGTH=669
Length=669
Score = 1096 bits (593), Expect = 0.0
Identities = 641/664 (97%), Gaps = 3/664 (0%)
Strand=Plus/Plus
Query 1 CCTCTGCTGTCGCTCGTCTACATTTACACTCGGAGCTTAGAGACCTTCCAATCTACCGGC 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 CCTCTGCTGTCGCTCGTCTACATTTACACTCGGAGCTT--AGACCTTCCAATCTACCGGC 58
Query 61 GGCGAAAATGGTTTTCAAGAGGTACGTTGAGATCGGGAGAGTAGCACTTGTGAACTACGG 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GGCGAAAATGGGTTTCAAGAGGTACGTTGAGATCGGGAGAGTAGCACTTGTGAACTACGG 118
Query 121 AGAAGATCATGGAAAGCTCGTCGTTATCGTCGACGTTGTTGACCAGAACAGAGCTTTGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGAAGATCATGGAAAGCTCGTCGTTATCGTCGACGTTGTTGACCAGAACAGAGCTTTGGT 178
Query 181 GGACGCCCCTGATATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCTCTTACCGATAT 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGATGCCCCTGATATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCTCTTACCGATAT 238
Query 241 CGTGATTGACATCAACCGAGTGCCAAAGAAGAAGGCTTTGATCGAGGCAATGGAGAAGGC 300
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 TGTCATTGACATCAACCGTGTGCCAAAGAAGAAGGCTTTGATCGAGGCAATGGAAAAGGC 298
Query 301 TGATGTGAAGAACAAGTGGGAGAAGAGCTCATGGGGTAGGAAGCTTATTGTGCAGAAACG 360
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 299 TGATGTGAAGAACAAGTGGGAGAAAAGCTCATGGGGTAGGAAGCTTATCGTGCAGAAACG 358
Query 361 TAGGGCCAACCTCAATGATTTTGATAGGTTCAAGATCATGTTGGCCAAAATCAAGAAAGC 420
|||||| ||||| || || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 359 TAGGGCTAACCTTAACGACTTTGATAGGTTCAAGATCATGTTGGCCAAGATCAAGAAAGC 418
Query 421 TGGTGTTGTCAGGCAAGAGCTTGCAAAACTCAAGAAGGAGATCACTGCCTGATCAAATAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGGTGTTGTCAGGCAAGAGCTTGCAAAACTCAAGAAGGAGATCACTGCCTGATCAAATAT 478
Query 481 TATCTACAATTCTGTTGTCTTTCTTTTTTGATTTTGGATTCGGAAATTAGTGTTTTTGGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TATCTACAATTCTGTTGTCTTTCTTTTTTGATTTTGGATTCGGAAATTAGTGTTTTTGGA 538
Query 541 ACTATCAACATCAGTATGTGCTCAATTATCCGACGTTATTCAAGTTTGAAACCTTGTTTG 600
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 539 ACTATCAATATCAGTATGTGCTCAATTATCAGACATTATTCAAGTTTGAAACCTTGTTTG 598
Query 601 AAAAACTCAAAGTTTTT-GTTCTTTTGATCTTAGTCTTACTTTCTTTTCTATGGTTCTAT 659
|||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 599 CAAAACTCAAAGTTTTTTGTTCTTTTGATCTTAGTCTTATTTTCGTTTATATGGTTCTAT 658
Query 660 GTTA 663
||||
Sbjct 659 GTTA 662
> AT2G20450.1 | Symbols: | Ribosomal protein L14 | chr2:8813862-8815253
FORWARD LENGTH=648
Length=648
Score = 438 bits (237), Expect = 3e-122
Identities = 359/418 (86%), Gaps = 8/418 (2%)
Strand=Plus/Plus
Query 60 CGGCGAAAAT-GGTTTTCAAGAGGTACGTTGAGATCGGGAGAGTAGCACTTGTGAACTAC 118
|||| ||||| |||||| ||||| | ||| ||||| |||||||| || || || ||||||
Sbjct 54 CGGCCAAAATGGGTTTT-AAGAGATTCGTGGAGATTGGGAGAGTGGCGCTCGTTAACTAC 112
Query 119 GGAGAAGATCATGGAAAGCTCGTCGTTATCGTCGACGTTGTTGACCAGAACAGAGC-TTT 177
|| || ||| ||||||||||||| ||||||||||| || || ||||| ||||| || ||
Sbjct 113 GGCGAGGATTATGGAAAGCTCGTGGTTATCGTCGATGTAGTCGACCAAAACAGGGCACTT 172
Query 178 GGTGGACGCCCCTGATATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCTCTTACCGA 237
||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 173 -GTGGATGCCCCTGACATGGAGAGAATCCAGATGAATTTGAAGAGGTTGTCTCTTACTGA 231
Query 238 TATCGTGATTGACATCAACCGAGTGCCAAAGAAGAAGGCTTTGATCGAGGCAATGGAGAA 297
||||| ||||| |||||| |||| || |||||||||| |||||| ||||||||||||||
Sbjct 232 CATCGTCATTGATATCAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAA 291
Query 298 GGCTGATGTGAAGAACAAGTGGGAGAAGAGCTCATGGGGTAGGAAGCTTATTGTGCAGAA 357
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 292 GGCTGATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAA 351
Query 358 -ACGTAGGGCCAACCTCAATGATTTTGATAGGTTCAAGATCATGTTGGCCAAAATCAAGA 416
| | || || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 352 GA-GAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGA 410
Query 417 AAGCTGGTGTTGTCAGGCAAGAGCTTGCAAAACTCAAGAAGG-AGATCACTGCCTGAT 473
|||||| |||| ||||| |||||||| || || || |||| ||||| |||| ||||
Sbjct 411 GGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAA-AAGGGAGATCGCTGCTTGAT 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32149854080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5