BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492089
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27080.2 | Symbols: ATPDIL5-4, ATPDI7, PDI7, PDIL5-4 | PDI-l... 2660 0.0
> AT4G27080.2 | Symbols: ATPDIL5-4, ATPDI7, PDI7, PDIL5-4 | PDI-like
5-4 | chr4:13589072-13593585 FORWARD LENGTH=1933
Length=1933
Score = 2660 bits (1440), Expect = 0.0
Identities = 1562/1621 (96%), Gaps = 8/1621 (0%)
Strand=Plus/Plus
Query 125 GAAAATCCCGAGGGATTTGACAGAAGCGTCTCTGTCTGGTGCTGGATTGTCCATTATAGC 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 282 GAAAATCCCGAGGGATTTGACAGAGGCGTCTCTGTCTGGTGCTGGATTGTCCATTATAGC 341
Query 185 AGCCCTCTCTATGATATTTTTATTTGGAATGGAATTGAATAATTATTTGGCTGTCAGCAC 244
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 342 AGCCCTCTCTATGATATTTCTATTTGGAATGGAGTTGAATAATTATTTGGCTGTCAGCAC 401
Query 245 TTCCACATCGGTCATTGTTGATAGGAGCGCTGACGGAGACTTCTTGCGCTTAGATTTTAA 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 402 TTCCACATCGGTCATTGTTGACAGGAGCGCTGACGGAGACTTCTTGCGCTTAGATTTTAA 461
Query 305 CATAAGCTTCCCGTCACTTTCATGTGAATTCGCATCTGTGGATGTCAGTGACGTATTAGG 364
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 462 TATAAGCTTCCCGTCACTTTCATGTGAATTCGCATCTGTGGATGTCAGTGATGTATTAGG 521
Query 365 AACTAACAGGCTAAATGTAACAAAGACAATTCGGAAGTTTTCTATTGATTCGAATATGAG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 AACTAACAGGCTAAATGTAACAAAGACAATTCGGAAGTTTTCTATTGATTCGAATATGAG 581
Query 425 ACCCACTGGTTCTGAGTTTCACGTCGGGGAAGTTTTATCGCTCATTAATCATGGAGATGA 484
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 582 ACCCACTGGTTCTGAGTTTCATGCCGGGGAAGTTTTATCACTCATTAATCATGGAGATGA 641
Query 485 AACTGGTGAAGAAGTAGTTGAAGATTCGGTACCACTTACTGGGCGCAACTTTGACACATT 544
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 642 AACTGGTGAAGAAATAGTTGAAGATTCGGTACCACTTACTGGACGCAACTTTGACACATT 701
Query 545 TACACATCAATTTCCAATCTTGGTTGTTAATTTCTATGCTCCGTGGTGCTATTGGTGTAA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TACACATCAATTTCCAATCTTGGTTGTTAATTTCTATGCTCCGTGGTGCTATTGGTGTAA 761
Query 605 TCTCCTGAAACCATCATGGGAGAAAGCAGCGAAACAAATAAAAGAGAGATATGATCCAGA 664
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 762 TCTCCTGAAACCATCATGGGAGAAAGCAGCTAAACAGATAAAAGAGAGATATGATCCAGA 821
Query 665 AATGGACGGACGTGTTATTTTGGCAAAAGTTGACTGCACCCAAGAAGGTGATCTCTGTCG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AATGGACGGACGTGTTATTTTGGCAAAAGTTGACTGCACCCAAGAAGGTGATCTCTGTCG 881
Query 725 GAGGAATCACATACAAGGGTATCCATCCATTCGTATTTTCCGCAAAGGCAGTGATCTTAA 784
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 882 GAGGAATCATATACAAGGGTATCCATCCATTCGCATTTTCCGCAAAGGCAGTGATCTTAA 941
Query 785 GGATGACAATGCACACCACGACCATGAATCCTACTATGGAGATCGTGATACGGAAAGCTT 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GGATGACAATGCACACCACGACCATGAATCCTACTATGGAGATCGTGATACGGAAAGCTT 1001
Query 845 AGTGAAGATGGTGGTTAGTGTGGTTGAACCAATCCATCTAGAGCCCCATAATCTAGCATT 904
||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1002 AGTGAAGATGGTGGTGAGTCTGGTTGAACCAATTCATCTAGAGCCCCATAATCTAGCATT 1061
Query 905 GGAGGACAAATCAGACAATTCATCGAGAACTTTAAAAAAGGCACCTTCTACAGGAGGATG 964
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1062 GGAGGACAAATCAGACAATTCATCGAGAACTCTAAAAAAGGCACCTTCTACAGGAGGATG 1121
Query 965 CCGAATTGAAGGATACATGCGTGTAAAGAAGGTTCCAGGCAACTTAATGGTTTCAGCTCG 1024
||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1122 TCGAGTTGAAGGATACATGCGTGTGAAGAAGGTTCCAGGCAATTTAATGGTTTCAGCTCG 1181
Query 1025 CTCGGGATCTCATTCCTTTGATTCTTCTCAAATGAATATGTCCCATGTTGTTAACCATCT 1084
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1182 CTCGGGATCTCATTCCTTTGATTCTTCTCAGATGAATATGTCACATGTTGTTAACCATCT 1241
Query 1085 ATCATTTGGGCGGAGGATTATGCCTCAGAAATTTTCTGAGTTAAAGCGCTTGTCACCTTA 1144
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1242 ATCCTTTGGGCGGAGGATTATGCCTCAGAAATTTTCGGAGTTTAAGCGCTTGTCACCTTA 1301
Query 1145 TCTCGGCCTAAGCCATGACCGTTTGGACGGCCGGCCCTTCATAAACCAACGTGATCTCGG 1204
||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 1302 TCTCGGCCTAAGCCACGACCGTTTAGACGGCCGGTCCTTCATAAACCAACGAGATCTCGG 1361
Query 1205 CCCAAATGTTACCATCGAGCATTATCTTCAAATAGTAAAGACAGAGGTAGTGAAAAGCAA 1264
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1362 CCCAAACGTTACCATTGAGCATTATCTTCAAATAGTAAAGACTGAGGTAGTGAAAAGCAA 1421
Query 1265 TGGACAGGCATTGGTTGAGGCGTATGAGTACACAGCACATAGCAGCGTTGCTCATAGTTA 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 TGGACAGGCATTGGTTGAGGCGTATGAGTACACAGCACATAGCAGCGTTGCTCATAGTTA 1481
Query 1325 CTATTTACCAGTTGCCAAGTTTCACTTTGAGCTATCACCGATGCAGGTTCTCATAACGGA 1384
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1482 CTATTTACCAGTGGCCAAGTTTCACTTTGAGCTCTCACCGATGCAGGTTCTCATAACGGA 1541
Query 1385 AAACTCCAAGTCCTTCTCACATTTCATCACCAACGTATGCGCCATTATCGGTGGTGTCTT 1444
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1542 AAACTCCAAGTCCTTCTCACATTTCATCACCAACGTATGCGCCATTATTGGTGGTGTCTT 1601
Query 1445 CACGGTGGCCGGAATCTTGGATTCTATTCTCCACCACTCCATGACACTGATGAAAAAGAT 1504
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1602 CACGGTGGCCGGAATCTTGGATTCTATTCTCCATCACTCCATGACACTCATGAAAAAGAT 1661
Query 1505 AGAACTTGGTAAAAACTTCTGAAGCTCTCCTAAGGGTTTTATTTCGTTTTCCTCTGTAAC 1564
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1662 AGAACTTGGTAAAAACTTCTGAAGCTC-CCTAAGGGTTTTATTTCGTTTTCCTCTGTAAC 1720
Query 1565 GAGTCAGAAAGTTTTGCCATA-TATACACAACCAGACGTCACCAAAATAATTCAGTTATA 1623
|||||||||| ||||||| || | || || | ||||||||| ||||||||| ||||||
Sbjct 1721 GAGTCAGAAATTTTTGCCCTAGT-TATAC--C-AGACGTCACTTAAATAATTCGGTTATA 1776
Query 1624 T-T-TTCGCAAACTGTTGTCCTTTTGAACATATATAAGTATTAGCGATGTCTCTGAAGTC 1681
| | ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1777 TATATTCACAAACTGTTATCCTTTTGAACATATATAAGTATTATCGATGTCTCTGAAGTC 1836
Query 1682 TTTGGGAGTTTTAGTAAAACAAATTGTTATCACTTCAATCAGGGGAATTTACTTCCAAAT 1741
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1837 TTTGGGAGTTTTAGTAGAACAAATTGTTATCACTTAAATCAGGGGAATTTACTTCCAAAT 1896
Query 1742 T 1742
|
Sbjct 1897 T 1897
Score = 191 bits (103), Expect = 2e-47
Identities = 118/125 (94%), Gaps = 1/125 (1%)
Strand=Plus/Plus
Query 1 CACAAGGGAGGTGCTTCGTCCTCGGAGCTTTGAGAAC-TAGCCAAGCAGTTCTTGTTTCT 59
|||||||||||||||||||||||| |||||| ||||| ||||||||||| | ||||||||
Sbjct 1 CACAAGGGAGGTGCTTCGTCCTCGAAGCTTTTAGAACTTAGCCAAGCAGCTGTTGTTTCT 60
Query 60 CAGTTGACTCCTTCTCCGACGAAAATGGTGTCCACGAGCAAGATCAAATCCGTTGATTTC 119
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAGTTGACTCCCTCTCCGACGAAAATGGTGTCCACGAGCAAGATCAAATCCGTTGATTTC 120
Query 120 TATAG 124
|||||
Sbjct 121 TATAG 125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86144135220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5