BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492093
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27030.1 | Symbols: FAD4, FADA | fatty acid desaturase A | c... 1718 0.0
AT3G30875.1 | Symbols: | pseudogene, putative multidrug resist... 1264 0.0
AT1G62190.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybr... 693 0.0
> AT4G27030.1 | Symbols: FAD4, FADA | fatty acid desaturase A |
chr4:13571921-13573070 FORWARD LENGTH=1150
Length=1150
Score = 1718 bits (930), Expect = 0.0
Identities = 1046/1102 (95%), Gaps = 8/1102 (1%)
Strand=Plus/Plus
Query 1 CTTTCACCTGCAATCTCTCTCAATGGCTGTATCACTTCAAACCAAGTACCCTCTAAGACC 60
||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 9 CTTTCACCTGCAATCACTCTCAATGGCTGTATCACTTCCAACCAAGTACCCTCTACGACC 68
Query 61 TATCACCAACATCCCAAGAAGCTACCGTCCGTCGCTTCTCCGTGTACGTGTCACCTGCTC 120
||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 69 TATCACCAACATCCCAAAAAGCCACCGTCCCTCGCTTCTCCGTGTACGTGTCACCTGCTC 128
Query 121 TGTTACTACCATCAAGCCTCAGCCAAATCGTGAGAAGCTTGTGGTAGAGCAACACATTGT 180
||||||||||| |||||||||||| ||||||||||||||| |||||||||||| || |||
Sbjct 129 TGTTACTACCACCAAGCCTCAGCCTAATCGTGAGAAGCTTCTGGTAGAGCAACGCACTGT 188
Query 181 GAAACCTCCTCTGTCCAACAACCACA-CTCTGCAATCGTCCAAGCCTCGGCCTAACCGTG 239
||| | ||||||||||||| |||| | ||||||||||| |||||||||| ||||||||||
Sbjct 189 GAATCTTCCTCTGTCCAACGACCA-ATCTCTGCAATCGACCAAGCCTCGCCCTAACCGTG 247
Query 240 AGAAGCTTGTGGTTGAGCAACGCCTTGCGAGTCCTCCTCTGTCCAATGACCCAACTTTGA 299
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 248 AGAAGCTTGTGGTTGAGCAACGCCTTGCCAGCCCTCCTCTGTCCAATGACCCAACTTTGA 307
Query 300 AATCGACATGGACCCATCGGTTATGGGTTGCAGCAGGCTGCACCACTTTGTTTGTCTCTT 359
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 308 AATCGACATGGACTCACCGGTTATGGGTTGCAGCGGGCTGCACCACTTTGTTTGTCTCTT 367
Query 360 TAGCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGGCTCGAACCAGCTTTAGCCG 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 368 TAGCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGCCTCGAACCAGCTTTAGCCG 427
Query 420 GTTATGCAGGGTACATCTTAGCTGATCTAGGTTCTGGTGTCTACCACTGGGCCATTGATA 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 428 GTTATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACTGGGCCATTGATA 487
Query 480 ACTACGGTGATGAGTCAACACCAGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACC 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 488 ACTACGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACC 547
Query 540 ACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 ACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTC 607
Query 600 AAGTCATAACCTTTACTGTTCTCCCACTAGACCTTGCATTTAACGACCCTGTCTTTCACG 659
||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 608 AAGTCATAACCTTCACAGTTCTTCCACTAGACCTTGCATTTAACGACCCTGTGTTTCACG 667
Query 660 GCTTTGTGTGCACATTTGCATTTTGCATAATGTTTAGCCAGCAATTCCATGCTTGGGCAC 719
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 668 GCTTTGTGTGCACATTTGCATTTTGCATATTGTTTAGCCAGCAATTCCATGCTTGGGCAC 727
Query 720 ATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTGGCGTTGCAGGACATGGGGTTGCTTG 779
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 728 ATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTCGCGTTGCAGGACATGGGGTTACTTG 787
Query 780 TTTCACGGAGACAGCACGCAGAACATCATCGAGCACCATATAACAACAATTACTGCATCG 839
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 788 TTTCACGGAGACAGCATGCGGAACATCATCGAGCACCGTATAACAACAATTACTGCATCG 847
Query 840 TGAGTGGGGCATGGAACAATGTTTTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGG 899
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 848 TGAGTGGAGCATGGAACAATGTTCTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGG 907
Query 900 TGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAACCAAACTCTGACTGGA 959
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 908 TGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAGCCAAACTCTGACTGGA 967
Query 960 CAGAAGAAACCGAGATCTCCAACAACCAAGCATAAACAAATTTTTTACAGATTGATACAT 1019
|||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 968 TAGAAGAAACCGAAATCTCCAACAACCAAGCATAAATATTTTTTTTACAGAGTGATACAT 1027
Query 1020 GTACAAGAAAATTTAAGTAATATAATGAAGAGATTTCTTCGTAATTTATACAGTATGTAA 1079
|||||||||||||| ||||||||| |||| |||||||||||||||||||| | ||||
Sbjct 1028 GTACAAGAAAATTTCAGTAATATACTGAAAAGATTTCTTCGTAATTTATA---T--GTAA 1082
Query 1080 TAAAGTGTGACTGTATTTAATa 1101
| ||||||||||||||||||
Sbjct 1083 CGA-GTGTGACTGTATTTAATA 1103
> AT3G30875.1 | Symbols: | pseudogene, putative multidrug resistance
protein, similar to multidrug resistance protein 1 homolog
GB:T06165 GI:7442649 from (Hordeum vulgare); blastp match
of 54% identity and 0. P-value to GP|2292907|emb|CAA71179.1||Y10099
P-glycoprotein homologue {Hordeum vulgare subsp.
vulgare} | chr3:12647725-12654422 REVERSE LENGTH=6698
Length=6698
Score = 1264 bits (684), Expect = 0.0
Identities = 812/875 (93%), Gaps = 4/875 (0%)
Strand=Plus/Plus
Query 123 TTACTACCATCAAGCCTCAGCCAAATCGTGAGAAGCTTGTGGTAGAGCAACACATTGTGA 182
||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 5171 TTACTACTACCAAGCCTCAGCTAAATCGTGAGAAGCTTGTGGTAGAGCAACGCATTGTGA 5230
Query 183 AACCTCCTCTGTCCAACAACCAC-ACTCTGCAATCGTCCAAGCCTCGGCCTAACCGTGAG 241
|| |||||||||| ||| | ||| || || |||| | ||||| || |||||| | ||||
Sbjct 5231 AATCTCCTCTGTCAAACGA-CACAACCCTACAATTGACCAAGTTTCAGCCTAATCATGAG 5289
Query 242 AAGCTTGTGGTTGAGCAACGCCTTGCGAGTCCTCCTCTGTCCAATGACCCAACTTTGAAA 301
|||||||||||||||||||| |||| ||||||||||||| |||| ||||||||| |||||
Sbjct 5290 AAGCTTGTGGTTGAGCAACGTCTTGTGAGTCCTCCTCTGACCAACGACCCAACTCTGAAA 5349
Query 302 TCGACATGGACCCATCGGTTATGGGTTGCAGCAGGCTGCACCACTTTGTTTGTCTCTTTA 361
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct 5350 TCGACATGGACCCATCGGTTAAGGGTTGCAGCGGGCTGCACCACTTTGTTTGTCTCTTGA 5409
Query 362 GCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGGCTCGAACCAGCTTTAGCCGGT 421
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 5410 GCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGGCTCGATCCAGCTTTAGCCGGT 5469
Query 422 TATGCAGGGTACATCTTAGCTGATCTAGGTTCTGGTGTCTACCACTGGGCCATTGATAAC 481
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 5470 TATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACTTGGCCATTGATAAC 5529
Query 482 TACGGTGATGAGTCAACACCAGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACCAC 541
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 5530 TATGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACCAC 5589
Query 542 AAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTCAA 601
|||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 5590 AAGTGGTCTTGGACAATCACCATACGGTAATTTGCTAACAATCTACACGCTCTGGCTCAA 5649
Query 602 GTCATAACCTTTACTGTTCTCCCACTAGACCTTGCATTTAACGACCCTGTCTTTCACGGC 661
|||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 5650 GTCATAACCTTTACAATTCTCCCACTAGACCTTGCATTTAACGACGATGTGTTTCATGGC 5709
Query 662 TTTGTGTGCACATTTGCATTTTGCATAATGTTTAGCCAGCAATTCCATGCTTGGGCACAT 721
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 5710 TTTGTGTGCACATTTGCATTTTGCATAATGCTTAGCCAGCAATTCCATGCTTGGGCACAT 5769
Query 722 GGAACCAAGAGCAAGCTTCCACCTCTCGTGGTGGCGTTGCAGGACATGGGGTTGCTTGTT 781
|||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 5770 GGAACCAAGAGCAAGCGTCCACCTCTCGTGGTAGCGTTGCAGAACATGGGATTGCTTGTT 5829
Query 782 TCACGGAGACAGCACGCAGAACATCATCGAGCACCATATAACAACAATTACTGCATCGTG 841
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 5830 TCAAGGAGACAGCACGCGGAACATCATCGAGCACCATATAACAACAATTACTGCATCGTG 5889
Query 842 AGTGGGGCATGGAACAATGTTTTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGGTG 901
|||||| ||||||||||||||||||||||||| || |||||||| | |||||||||||||
Sbjct 5890 AGTGGGACATGGAACAATGTTTTGGATGAGAGCAATGTCTTTGAAGAATTGGAGATGGTG 5949
Query 902 TTTT--ATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAACCAAACTCTGACTGGA 959
|||| |||||||||||||| |||||||| | | |||| |||||||||||||||||||||
Sbjct 5950 TTTTTTATTTCCAGCTTGGGATGAGACCTCGATTATGGGGTGAACCAAACTCTGACTGGA 6009
Query 960 CAGAAGAAACCGAGATCTCCAACAACCAAGCATAA 994
||||||||| ||||||||||||||| ||||||||
Sbjct 6010 TAGAAGAAACAGAGATCTCCAACAACAAAGCATAA 6044
> AT1G62190.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybrid
localisation domain | chr1:22980976-22982007 FORWARD LENGTH=1032
Length=1032
Score = 693 bits (375), Expect = 0.0
Identities = 641/769 (83%), Gaps = 20/769 (3%)
Strand=Plus/Plus
Query 219 CCAAGCCTCGGCCTAACCGTGAGAAGCTTGTGGTTGAGCAACGCCTTGCGAGTCCTCCTC 278
|||| |||| || ||| | |||||| ||||| |||||| ||||||||| || ||||||||
Sbjct 104 CCAATCCTCAGCTTAATCATGAGAACCTTGTAGTTGAGAAACGCCTTGTGAATCCTCCTC 163
Query 279 TGT-C-----CAATGACCCAACTTTGAAATCGACATGGACCCATCGGTTATGGGTTGCAG 332
| | | ||| ||||| ||| || ||||||||||||| |||||||||||||||||||
Sbjct 164 TTTCCAAGAACAACGACCCGACTCTGCAATCGACATGGACTCATCGGTTATGGGTTGCAG 223
Query 333 CAGGCTGCACCACTTTGTTTGTCTCTTTAGCTAAATCTGTCATTGGAGGGTTTGATTCTC 392
| || | || || | |||| |||||| ||||||||| ||||||||||||||| |||||
Sbjct 224 CGGGAAGTACAACCATATTTGCCTCTTTCGCTAAATCTATCATTGGAGGGTTTGGTTCTC 283
Query 393 ATCTCTGGCTCGAACCAGCTTTAGCCG-GTTATGCAGGGTACATCTTAGCTGATCTAGGT 451
|||| |||||| |||||||||||| || |||||||||||||| | || |||||||||||
Sbjct 284 ATCTTTGGCTCCAACCAGCTTTAG-CGTGTTATGCAGGGTACGTGTTTGCTGATCTAGGC 342
Query 452 TCTGGTGTCTACCACTGGGCCATTGATAACTACGGTGATG-AGTCAACACC-AGTAGTAG 509
|| ||||| ||||||||||||||||||||||| |||| || | |||||||| | |||| |
Sbjct 343 TCCGGTGTTTACCACTGGGCCATTGATAACTATGGTGGTGCA-TCAACACCTA-TAGTTG 400
Query 510 GAACCCAAATCGAAGCATTTCAGGGTCACCACAAGTGGCCTTGGACAATCACCAGACGGC 569
|| ||||| | ||||| | ||||||||| ||||||| || ||||||||||| | ||| |
Sbjct 401 GAGCCCAACTTGAAGCGTCTCAGGGTCATCACAAGTATCCCTGGACAATCACAAAACGTC 460
Query 570 AATTTGCCAACAA-TCTACACGCTCTGGCTCAAGTCATAACCTTTACT-GTTCTCCCACT 627
|||| |||||||| || | || || | |||| || |||||| |||| | ||||| |||||
Sbjct 461 AATTCGCCAACAATTC-ATACACTATCGCTCGAGCCATAACTTTTA-TAGTTCTACCACT 518
Query 628 AGACCTTGCATTTAACGACCCTGTCTTTCACGGCTTTGTGTGCACATTTGCATTTTGCAT 687
| |||||||| ||||| | ||| | ||||| |||||||| |||||||||||||||||||
Sbjct 519 AAACCTTGCAATTAACAATCCTCTGTTTCATAGCTTTGTGAGCACATTTGCATTTTGCAT 578
Query 688 AATGTTTAGCCAGCAATTCCATGCTTGGGCACATGGAACCAAGAGCAAGCTTCCACCTCT 747
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 579 TTTGTTAAGCCAACAATTCCATGCTTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCT 638
Query 748 CGTGGTGGCGTTGCAGGACATGGGGTTGCTTGTTTCACGGAGACAGCACGCAGAACATCA 807
|||| ||||||||||||||||||| ||||||| ||||||| | | ||| | | ||||||
Sbjct 639 CGTGATGGCGTTGCAGGACATGGGACTGCTTGTCTCACGGAAAGATCACCCGGGACATCA 698
Query 808 TCGAGCACCATATAACAACAATTACTGCATCGTGAGTGGGGCATGGAACAATGTTTTGGA 867
| |||||| ||||||| ||| ||||| | |||||||||||||||||||| ||||||||
Sbjct 699 CCAAGCACCGTATAACAGCAACTACTGTGTAGTGAGTGGGGCATGGAACAAAGTTTTGGA 758
Query 868 TGAGAGTAAGGTCTTTGAGGCATTGGAGATGGTGTT-TTATTTCCAGCTTGGG-GTGAGA 925
|| ||||| | ||| ||||||||||||||| ||| || ||||||| || || ||||||
Sbjct 759 CGAAAGTAACTTATTTAAGGCATTGGAGATGGCGTTGTT-TTTCCAG-TTCGGTGTGAGA 816
Query 926 CCTAGGTCATGGAGTGAACCAAACTCTGACTGGACAGAAGAAACCGAGA 974
|| | || |||| || |||||||||||||||||||||||||||||||
Sbjct 817 CCAAACTCGTGGAACGAGCCAAACTCTGACTGGACAGAAGAAACCGAGA 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5