BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492097
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2220 0.0
AT5G54920.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 178 2e-43
> AT4G26990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G54920.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:13550906-13554386 REVERSE LENGTH=1802
Length=1802
Score = 2220 bits (1202), Expect = 0.0
Identities = 1481/1612 (92%), Gaps = 34/1612 (2%)
Strand=Plus/Plus
Query 1 AATTTAGCTCCGAATAGACCGTGATTT-GATAGAAACTTGTAGAGATTTGAATTC-TT-T 57
||||||||||||||||||||||||||| |||||||||| || ||||||||| || || |
Sbjct 36 AATTTAGCTCCGAATAGACCGTGATTTCCATAGAAACTTCTACAGATTTGAAATCTTTCT 95
Query 58 TCAGAGAAAATCG-AACATTGAAAGGTCGTCaaaaaaaGGATGGGAAACGCAAGGAAAGT 116
||| || | | | || | | || | |||||||||||||||||||||||||||||
Sbjct 96 TCA-AGGGATTTGAAAGGTCGTCAGAAAG-AAAAAAAAGGATGGGAAACGCAAGGAAAGT 153
Query 117 GGAAGACGACGACAACAACAACTCTtcatc-a-tcatcatcatcGCTGTTAATAGCAGCA 174
||||||||||||||||||||| | || | | || ||||||||| ||||||||||||||
Sbjct 154 GGAAGACGACGACAACAACAA--CAACAACAAGTCTTCATCATCGGTGTTAATAGCAGCA 211
Query 175 ACCATGTGCATAATCGGATTGCAAGTTCATGTTCACGTCAAGGATGGTTCCGTCTTTTCT 234
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 ACTATGTGTATAATCGGATTGCAAGTTCATGTTCACGTCAAGGATGGTTCCGTCTTTTCT 271
Query 235 GGGATTTTCTTCACCGCTTCCGTCGACAACGGCTTTGGCATTGTTTTGAAGAATGCAAGA 294
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 272 GGGATTTTCTTCACCGCTTCCGTCGACAATGGCTTTGGCATTGTTTTGAAGGATGCAAGA 331
Query 295 ATTACTAAGAAGGGGACAAGTAAATCCAATGTAGCAAGCGGGACTGTGGTCGATACACTT 354
|||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 332 ATTACTAAGAAGGGGACAAGTATATCGAATGTAGCAAGCGGGAGTGTGGTCGATACACTT 391
Query 355 GTTATTCTGTCTTCCAATATTGTTCAAATTGTTGCGGAAGGAGTCTCGCTTCCATCGAAT 414
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||
Sbjct 392 GTTATTCTGTCTTCCACTATTGTTCAAATAATTGCGGAAGGAGTCTCGCTTCCATCAAAT 451
Query 415 GTTAGAGCATG-CAATAATGAGGTTGGATCAGCCACAGAAACATTACCTTCTGAGCCTCG 473
|||| | || | |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 452 GTTACAACA-GCCAATAATGAGGTCGGATCAGCCACAGAAACATTACCTTCTGAGCCTCG 510
Query 474 TTTATGTGCTG------------CAAATGTTTCCACTCGAGGAAGGGGATATAATCATAA 521
||||||||||| ||||||||||||||| ||||||||| | |||||||||
Sbjct 511 TTTATGTGCTGCAAATAAATCCACAAATGTTTCCACTCAAGGAAGGGGCTTTAATCATAA 570
Query 522 GAGGCAGGCTGGAGC-CAAGATTTTGAAGCGTAGTGTACAAATTCCAGACATTCATCAAG 580
||||||||||||||| | ||||||||||||||||||||||||||||||| || |||||
Sbjct 571 GAGGCAGGCTGGAGCTC-AGATTTTGAAGCGTAGTGTACAAATTCCAGAGGTTTATCAAC 629
Query 581 AGGATAATATTGATATCCAAAGCTCAAGTTCTAGCTTGGATAGCATATCCGAACGAGTTA 640
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 630 AGGATAATATTGATATCCAAAGCTCAAGTTCTAGCTTGGATAGCATGTCCGAACGAGTTA 689
Query 641 AACCCATAGAAGAAGATAACTTGATGCCGGAACCTTTTAGTAATGGTTTTCACGATGCTT 700
|||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 690 AACCTATAGAAGAAGATAACTTGATGCCGGAACCTCTTAGTAATGGTTTTCACAATGCTG 749
Query 701 CTG-AAAGGCCCTCTTCAACTGACAATTCATCATCACAAAGTACAACTTTTGATGACACC 759
||| ||| ||||||||||||||||||| || ||| |||||||| || |||||||||||
Sbjct 750 CTGCAAA-ACCCTCTTCAACTGACAATTTATTGTCAGAAAGTACACCTGTTGATGACACC 808
Query 760 TCGGAATTGTGTCGGGGTAGAAT---GGCATCTTCAACTGCATCAGTACCTATCCAGGCC 816
| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 809 TTGGAATTGTGTCGGGGTAGAGTGGCGGCATCTTCAACTGCATCAGTACCTATCCAGGCC 868
Query 817 GTCAAAAAGGCTAAGGAGTTCAAGCTGAATCCAGAGGCAAAGATTTTTTCTCCGTCTTAT 876
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 869 GTCAAAAAGCCTAAGGAGTTCAAGCTGAATCCAGAGGCTAAGATTTTTTCTCCGTCTTAT 928
Query 877 ACAAAAAGGCTTTCACCGTCTCCAGTTGCTGTGCCTGATGTTGGAAATATTGCTTATATA 936
|||||| |||||||||||||||| || | | ||||| ||||||||||||||||||| |||
Sbjct 929 ACAAAACGGCTTTCACCGTCTCCTGTCGGTATGCCTCATGTTGGAAATATTGCTTACATA 988
Query 937 CCAAGCAACACTCCCATGCTACCAGTTCCTGAAGCTATTTACCCAGGAGTTGGAAACAAT 996
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 989 CCAAGCAACACTCCCATGCTACCAGTTCCTGAAGCTATTTACCCAGAAGTTGTAAACAAC 1048
Query 997 GCTTATGTGCCGCAAGCACCTCCACCTTCTAAGTTTGTACCATATGGTAATTTGACTGCT 1056
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1049 CCTTATGTGCCGCAAGCACCTCCACCTTCTAAGTTTGTACCATATGGTAATGTGACCGCT 1108
Query 1057 GGACATGCTGTCAGCGGATTTCAATTTCCTCAACACATGATTGGACCTACCGTTAACAGG 1116
|||||||||||| | ||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1109 GGACATGCTGTCGGTGGATTTCAATTTCCTCAACACATGATTGGGCCAACTGTTAACAGA 1168
Query 1117 GCACAGCCTCAGAGATTCACCTCTCAGTACCATTCTGTTCAAACTGCACCGATGCTTGTA 1176
|||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||
Sbjct 1169 GCACAGCCTCAGAGATACACCGCTCAGTACCATTCTGTTCAAGCTGCACCAATGCTTGTA 1228
Query 1177 AATCCAAGTCCTCAGGTGATGGTTGCAAGATCGGGGCAGCTTGTATATGTCCAATCAGTT 1236
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1229 AATCCAAGTCCTCAGGTGATGGTTGCAAGATCGGGGCAGCTTGTCTATGTCCAATCAGTT 1288
Query 1237 TCTCAGGATCTGGTTCAAGGAACACCGCCTCTCTCACCTATGCTCTC-TGGTCCTCTACC 1295
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1289 TCTCAGGATCTGGTTCAAGGAACACCGCCTCTCTCACCTATGCTCTCCTGC-CCTCTACC 1347
Query 1296 TACTGCACAACATGTCCAATACCTGAAGCATCACGGTGTAGTAGCAGCTGGCCAGCCGCT 1355
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1348 TACCGCACAACATGTCCAATACCTGAAGCATCAAGGTGTAGTAGCAGCTGGCCAGCCGCT 1407
Query 1356 ACCGCTATGTGTCTCCCAACCGTTCACGACTGGTGGACCGCAACCTTATGGCATTCCCAC 1415
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1408 ACCGCTATGTGTCTCCCTACCATTCACGACTGGTGGACCGCAACCTTATGGCATTCCCAC 1467
Query 1416 CCAATTCCCGGTTATGCAGCAGCCTCCTTTTCCCACAAATCAGCCAATGACATTTGCAGT 1475
||||||||| | |||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 1468 CCAATTCCCAGCTATGCAGCAGCCTCCTTTCCCCACGAATCAGCCAATGACAGTTGCAGT 1527
Query 1476 TGCTAATGGTTTCTACACAAAGTTTCCATAAACAAAGTCTCATTGTTTTTGGTTTAAATA 1535
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1528 TCCTAATGGTTTCTACACAAAGTTTCCATAAACAAAGTCTCATTGTTTTTGGTTTCA-TA 1586
Query 1536 CCTTTATTCTTTACCTCTCCAACCTAATAAGGGTTAAGAAGGTCCTAGTTTT 1587
|||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1587 CCTTTATTCTTTGCCTCTCCAACCTAATAAGGGTTAAAAAGGTCCTAGTTTT 1638
> AT5G54920.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22302001-22305795
FORWARD LENGTH=1898
Length=1898
Score = 178 bits (96), Expect = 2e-43
Identities = 196/244 (80%), Gaps = 8/244 (3%)
Strand=Plus/Plus
Query 178 ATGTGCATAATCGGATTGCAAGTTCATGTTCACGTCAAGGATGGTTCCGTCTTTTCTGGG 237
||||| || ||||| || ||||| ||||| || |||| ||||| || || |||||||||
Sbjct 204 ATGTGTATCATCGGCTTACAAGTCCATGTGCATATCAACGATGGCTCTGTGTTTTCTGGG 263
Query 238 ATTTTCTTCACCGCT-TC-CGTCGACAACGGCTTTGGCATTGTTTTGAAGAATGCAAGAA 295
|| |||| ||| | | || | | || || | || | ||||| ||||||||||||| ||
Sbjct 264 ATATTCTACACTG-TCTCTC-TTGAGAATGAATTCAGTATTGTGTTGAAGAATGCAA-AA 320
Query 296 -TTACTAAGAAGGGGACAAGTAAATCCAATGTAGCAAGCGGGACTG-TGGTCGATACACT 353
||||||||||||| | ||||||||| ||||||| ||| |||| | | || || |||||
Sbjct 321 CTTACTAAGAAGGGAAGAAGTAAATCGAATGTAGAAAGTGGGA-AGATTGTGGAGACACT 379
Query 354 TGTTATTCTGTCTTCCAATATTGTTCAAATTGTTGCGGAAGGAGTCTCGCTTCCATCGAA 413
||| ||| |||||||||||||||||||||||||||| || |||||||||||| | || ||
Sbjct 380 TGTGATTTTGTCTTCCAATATTGTTCAAATTGTTGCAGAGGGAGTCTCGCTTTCGTCCAA 439
Query 414 TGTT 417
||||
Sbjct 440 TGTT 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5