BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492098
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26980.1 | Symbols: | RNI-like superfamily protein | chr4:1... 2021 0.0
> AT4G26980.1 | Symbols: | RNI-like superfamily protein | chr4:13548546-13550722
REVERSE LENGTH=1377
Length=1377
Score = 2021 bits (1094), Expect = 0.0
Identities = 1279/1365 (94%), Gaps = 25/1365 (2%)
Strand=Plus/Plus
Query 1 AATATTCAC-CGATTCGAATCTCCGGCGATCAGAAATCTCGCGGTGAAATTTGATGGAAG 59
||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 27 AATATTC-CTCGATTAGAATCTCCGGCGATCAGAAATCTCGCGGTGAATTTTGATGGAAG 85
Query 60 AACAGCTGCCAAAATCGCTCAAGAATCTCGACTTGAATAGGAA------TCGTGGACCAA 113
|| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 86 AAAAGCTGCCAAAATCGCTCAAGAATCTCGATTTGAATACGAATCGTGGTCGTGGACCAG 145
Query 114 AGAAGAAGATTCTTGTTTCAGCTTATCTATCCTCCTCACGAATAATGTCTCCACTGAAAT 173
|||| ||||||||||||||||||||| |||| || ||||| |||||||||||||||||
Sbjct 146 AGAATAAGATTCTTGTTTCAGCTTATGTATCTTCGTCACG---AATGTCTCCACTGAAAT 202
Query 174 CAAAACCTCCATCTCTTGTGAGCTTATGTCTTGGTGTTATTGGGAAGCATTTGGAGGAAA 233
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 203 CAAAACCTCCATCTCTTGTGAGCTCATGTCTTGGTGTTATTGGGAAGCATTTGGAGGATA 262
Query 234 TGATTCCTTGTTTAGCTGATATCTCTGTTATATTTCCTGCCGACATCAAGATGTCGATTG 293
|||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 263 TGATTCGTTGTTTAGCTGAAATCTCTGTTATATTTCCTGCAGACATCAAGATGTCGATTG 322
Query 294 CAGCAATTGCTAGAAGAAAAAAGCTACTGGATGATGATGTGATTACCTCTTTGGCTGACA 353
||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 323 CAGCAATTGCTAGAAGAAAAAAGCTGCTGGATGATGATGTGATTATCTGTTTGGCTGACA 382
Query 354 GTTCCTGGGAAATTCTAGACCTTAGCGGTTCAGATGTTACGAATACTGGCTTAGCTAAAG 413
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 383 GTTCCTGGGAAATTCTAGATGTTAGCGGTTCAGATGTTACGAATTTTGGCTTAGCTAAAG 442
Query 414 TGGCGGAAATGTGCAAATCTCTCCGAGCTGTGGACATTAGCCGGTGCAACAAAATCTCAT 473
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TGGCAGAAATCTGCAAATCTCTCCGAGCTGTGGACATTAGCCGGTGCAACAAAATCTCAT 502
Query 474 CCATGGGCGTCTTAGAGCTTGTACAACACTGCCGATCATTGGAGACTCTTAGATGCGGAG 533
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 503 CCATGGGCGTCTTAGAGCTTGTACAACACTGCAGATCATTGGAGACTCTTAGATGCGGGG 562
Query 534 GATGCCCAAGCAGTGAGTCCACCGCGCGCAGATCTTTGAGtttttttAAGCCAAACTTGA 593
|||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 563 GATGCCCAAGCAGTGAGTCCACGGCACGCAGATCTTTGAGTATTTTTAAGCCAAACTTGA 622
Query 594 GTAATGGTGAAGGAGAAACATGGGAAGAAATAGACACTTCAGAGATTGGCCATGGTGGTC 653
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GTAATGTTGAAGGAGAAACATGGGAAGAAATAGACACTTCAGAGATTGGCCATGGTGGTC 682
Query 654 AATCATTGCGTTGGCTTGTTTGGCCACGAATTGATAAGGATTCATTGGAGATGTTATCCT 713
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 683 AATCATTGCGTTGGCTTGTTTGGCCACGAATTGATAAGGATTCACTGGAGATGTTATCCT 742
Query 714 TGGAGTGTCCAAGAATAGTGGTAAATCCCAAACCATCACTTGTCGCGTACAGAGCAGACG 773
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 743 CGGAGTGTCCAAGAATAGTGGTAAATCCCAAGCCATCACTTGTCGCGTACAGAGCAGACG 802
Query 774 AGGTTCCTCGAGAAGCACTACCAGATGTTGCAGTGGACGAACCATTTGTCAAAGATATTG 833
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 803 AGGTTCCTCGAGAAGCACTACCAGATGTTGCACTGGACGAACCATTTGTCAAAGATATTG 862
Query 834 ATCCTAAGACGTGGGTTGTTACTGGAGTTGTGCAGAAGCCCACATCTTTCCTGTTATGCA 893
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 863 ATCCTAAGACGTGGGTTGTTACTGGAGTTGTGCAGAAGCCCACATCTTTCCCGTTAAGCA 922
Query 894 ATGAACTGCCAATAGCAGAGAAGTTCAGACTAGCATTTGCAGAGAGAGATGCAAGATTGG 953
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 923 ATGAACTGTCAATAGCAGAGAAGTTCAGACTAGCATTTGCAGAGAGAGATGCAAGAATGG 982
Query 954 CCCCTAAACGTGCAAAGAATGCAAGGCAACGTCAGCGTCGTGCTGAGAGGGATTGGATGA 1013
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 983 CCCCTAAACGTGCAAAGAATGCAAGGCAACGTCAACGTCGTGCTGAGAGGGATTGGATGA 1042
Query 1014 TGTCAAGCGACGAAGCCAAAGCAATGGTTTTGGCATCAAAGGCCACCAGATCTTTGCACA 1073
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1043 TGTCAAGCGACGAAGCCAAAGCAATGGTTTTTGCATCAAAGGCTACCAGATCTTTGCACA 1102
Query 1074 AGAGTTAGCAATATGAATTCTCTTCATCAAATATATGTCAAAGAAAATATAGGAGGAAGA 1133
||||||| ||||||| ||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct 1103 AGAGTTAACAATATGGATTCTCTTCATAAAATGTATGACAAAGAAAATATAGGAGGAAGA 1162
Query 1134 TGAGTGGATTTTCTTATGAG-GCATGCTTCTT--CTCTACTGTGGTCGAGTTGAATCAGT 1190
||||||||||| || | || |||||| |||| ||||||||||||| |||| |||||||
Sbjct 1163 TGAGTGGATTT-CTAA-GAATGCATGCCTCTTTTCTCTACTGTGGTCAAGTTCAATCAGT 1220
Query 1191 TCACAGCAGTTTTTGGG-AGGAAAAGTGAATAGAAAAGAACAGTGGCTGGTTACAGAAAA 1249
| |||||||||| |||| || ||||||||||||| | |||||||||| ||||||
Sbjct 1221 TTACAGCAGTTTCTGGGGAGCAAAAGTGAATAGA---G-----TGGCTGGTTAGAGAAAA 1272
Query 1250 GTGTTTGTAACAGTTTAATCTTGTTTCCAGATCTTTCAAGTGGTGCTACAGTCAAAGATA 1309
|||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||
Sbjct 1273 GTGTTTGTAACAGTTTAATCTTGTTTCCAGGTCTTTCAATTGATGCTACGGTCAAAGATA 1332
Query 1310 CGTTAAACTGTTTATAGAATGAAGTGTGTAATTTTGCATTTTCTT 1354
|||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1333 CGTTAAACTGTTTATAAAATGAAGTGTGTATTTTTGCATTTTCTT 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5