BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492100
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26965.1 | Symbols: | NADH:ubiquinone oxidoreductase, 17.2k... 1301 0.0
> AT4G26965.1 | Symbols: | NADH:ubiquinone oxidoreductase, 17.2kDa
subunit | chr4:13539642-13542397 FORWARD LENGTH=986
Length=986
Score = 1301 bits (704), Expect = 0.0
Identities = 848/913 (93%), Gaps = 27/913 (3%)
Strand=Plus/Plus
Query 1 TTGAGTTTGTGGATCATACGGAGAAGTAATCGGCGGGAGAAGCTATGTCGAGACTATGGG 60
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct 32 TTGAGTTTTTGGATCATACGAAGAAGAAATCGGCGGGAGAAGCTATGTCGAGGCTATGGG 91
Query 61 CGAGATTTGCGGGATTGTTCAGTAGCAAGAGTTTTATCGGAGTAGACAAGACTGGTAACA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 CGAGATTTGCGGGATTGTTCAGTAGCAAGAGTTTTATCGGAGTAGACAAGACTGGTAACA 151
Query 121 AGTACTTTTCCAGAATGGAAGAGATTGACGGATTGGTGAAGGAGAAAAGATGGGTTGTCT 180
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 152 AGTACTTTTCCAGAATGGAGGAGATTGACGGATTCGTGAAGGAGAAAAGATGGGTCAAGT 211
Query 181 TTAGAAGAGAGGAGGACCCAACCTCTATTCCTGTTGAATGGATATGTTGGCTAAATGGGC 240
||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 212 TTAGACGAGAGGAGGACCCAACCTCTATTCCTGTTGAATGGATTTGTTGGCTGAATGGGC 271
Query 241 AGCGAAAAAGGGCTCCTACTCCAGCGGAAATGGTTGAACTTGAAGCAAGGCGTGAGCGTG 300
|||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 272 AGCGAAAAAGGGCTCCTACTCCTGAGGAAATGATTGAACTTGAAGCAAGGCGTGAGCGTG 331
Query 301 TGAAGCTTAATGTTGCTCTTCTCAAGAAAGAAGAGGAGGAGAAGAAAGCCAGAGAAGGCA 360
| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 332 TAAAGCTTAATGTTGCTCTTCTCAAGAAGGAAGAGGAGGAGAAGAAAGCCAGAGTAGGCA 391
Query 361 CCGGACGCAAAATCACCATTGGTAAAGTTGACGGTCCAGATTTGACAAGCTTTGTTCGCC 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 392 CCGGACGCAAAATCACCATTGGTAAAGTTGATGGTCCAGATTTGACAAGCTTTGTTCGCC 451
Query 421 ACTTTCCACCGGATTCAAAAGGTGGTGAACCAGAGGAAGCTAGCGAAGAAGCAGATAAAT 480
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 452 AATTTCCACCAGATTCAAAAGGTGGTGAACCAGAGGAAGCTAGTGAAGAAGCAGATAAAT 511
Query 481 CAAGGGCCAAGGAACATGAACCCGAGATAGTTTCTGCAGAACCACCCGAACCAAAGACAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 CAAGGGCCAAGGAACATGAACCCGAGATAGTTTCTGCAGAACCACCCGAACCAAAGACAA 571
Query 541 CAGAGCCATCAGGATCTGGATCATCATTTAGGCCCGGGACATGGCAGCCACCATCCTAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CAGAGCCATCAGGATCTGGATCATCATTTAGGCCCGGGACATGGCAGCCACCATCCTAAA 631
Query 601 CACATCACTCTTC-------T--C---CCAG-AT--TATT---TT-----GTTTGTTGTA 637
|||||| |||||| | | ||| || |||| || ||||||||||
Sbjct 632 CACATCTCTCTTCACGCAGATGACAAACCAACATACTATTCAATTATTTTGTTTGTTGTA 691
Query 638 CTCCACACATACCGATTGGTTTGAGCCTTACCGATGAACCATTAGACCAGAGAGCTTTTC 697
||| ||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 692 CTCTACACA-ACCGATTGGTTTGAGCCTTACAGATGAGCCATAAGACCAGAGAGCTTTTC 750
Query 698 AAGACCCTAAATTTGTGGCTTTTCACGCTGTCATTGAGGACTTAGAAGAGTCAAAATGAG 757
||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 751 AAGACCCTAAAATTGTGTCCTTTCACGCTGTCATTGAGGACTTAGAAGAGTCAAAATGAG 810
Query 758 AAGCCATCTTCTTATGCTTTGTTTTGTTTAGGGTGTTTGTCTCTTGGCATAATGCTTGAG 817
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 AAGCCATCTTCTTATACTTTGTTTTGTTTAGGGTGTTTGTCTCTTGGCATAATGCTTGAG 870
Query 818 ACTTTTAGCTTGCCTTGTCCTTCATAGCTGAAGAAGAGCCTAGCAGCTACCCTTCGTTTT 877
||||||||| |||||||||||||||||||||||| ||||||||| |||| || ||||
Sbjct 871 ACTTTTAGCCTGCCTTGTCCTTCATAGCTGAAGAGGAGCCTAGC---TACCTTTTGTTTC 927
Query 878 TCTTCGTTGACTT 890
|||||||||||||
Sbjct 928 TCTTCGTTGACTT 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44356751801
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5