BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492102
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 664 0.0
> AT4G26960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G54970.1); Has 22 Blast
hits to 22 proteins in 8 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:13538743-13539653
REVERSE LENGTH=651
Length=651
Score = 664 bits (359), Expect = 0.0
Identities = 505/573 (88%), Gaps = 20/573 (3%)
Strand=Plus/Plus
Query 1 AATTGTTCCCCGATCGAGTCTGCTCCGTCTGGATC--AAA-AATCCGACCCGGTAAACGG 57
||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct 4 AATTGTTCCCCAATCGAGTCTGCTCCGTCCGGATCAAAAAGAATCCGACCCGGT-AACGG 62
Query 58 AT-ATTTA-AATATGTC-AGGA-ACAATGACAAACGAATCTCCAGATCGCCGGTGAGAAG 113
| | | ||| || | || ||| ||| |||||||||||||||||||||||||
Sbjct 63 GTCCCTCACAAT-CCTCTTCTACACCATG--AAAGGAATCTCCAGATCGCCGGTGAGAAG 119
Query 114 AAACGACGGTTTCCACCGTTACTTGAAACCAGGGGCTCTGGCTCAGATCCGTAATTCTAG 173
||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 120 AAACGACGGTTTCCATCGTTACATGAAACCAGGGGCTCTGGCTCAGATCCGTAACGCTAG 179
Query 174 AATCAAC---GCTAGATCCAACT-CGCCCCTGACTCGTTCTCTCACGGATCCAGTCCACC 229
||||||| ||||||||||| | | |||||||||||||||||| |||| |||||| |||
Sbjct 180 AATCAACAACGCTAGATCCAATTTC-CCCCTGACTCGTTCTCTCTCGGACCCAGTCGACC 238
Query 230 CGCTTTCATCTTCTACCGAGAGTCCTGTTGCTGCGCCTCCGCAGACCATAACTATGGACC 289
||| |||||| ||| ||||||||||| |||| ||| | |||||||| ||||||||||| |
Sbjct 239 CGCCTTCATCATCTTCCGAGAGTCCTATTGCCGCGACGCCGCAGACGATAACTATGGATC 298
Query 290 AGATGCCCCATCTCTTGAGCAAGATCTATGGTCCGTATCGAATCGGTAGGAAGAAATTTG 349
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 299 AGATGCCCCATCTCTTGAGCAAGATCTACGGTCCGTATCGAATCGGTAGGAAGAAACTTG 358
Query 350 GCCCTGCGAGATCTGCGATGATGAATTTGAACCCTTC-CCAAACTCTATACTTGAATCTA 408
|||||||||||||||||||| |||| ||||||||||| ||||| |||||||| |||||||
Sbjct 359 GCCCTGCGAGATCTGCGATGGTGAAATTGAACCCTTCTCCAAATTCTATACTCGAATCTA 418
Query 409 CTAATGGTAACAGCAACGTATTGAGTAATAATGATGTTTTAGTTGCTCATTGAATTAAGC 468
||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct 419 TTAATGGTAACAGCAACGTACTGAACAATAATGATGTTTTAGTTGCTCATTGAATGAAGC 478
Query 469 TTAA-GTTCA-TTTCCCTTCTTTATGTAGATTACTTTGTAACTGTTACACTTTGGGGAAA 526
|||| || | ||||||||||| |||||||||||||||||||| ||| |||||||||||
Sbjct 479 TTAAAGTGAAATTTCCCTTCTTC-TGTAGATTACTTTGTAACTGATACTCTTTGGGGAAA 537
Query 527 TATCTTCAATACTCATCAGACTTTTATAATTAC 559
|||||||| |||||||||||||||||||| |||
Sbjct 538 TATCTTCACTACTCATCAGACTTTTATAAATAC 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26875268645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5