BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492103
Length=523
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26950.1 | Symbols: | Protein of unknown function, DUF584 |... 817 0.0
> AT4G26950.1 | Symbols: | Protein of unknown function, DUF584
| chr4:13533564-13534159 REVERSE LENGTH=596
Length=596
Score = 817 bits (442), Expect = 0.0
Identities = 501/528 (95%), Gaps = 9/528 (2%)
Strand=Plus/Plus
Query 1 AGAGTTTTTGTATAATCGAAGATCTTTCATGGTCGTC-TGTTATGTTTTGTAGAAGCAGC 59
||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 14 AGAGTTTTTGTTTAATCGAAGATCTTTCTTGGTCGTCATGTTATGTTTTGTAGAAGCAGG 73
Query 60 TGAGTATCAATGGAGAAGAACTACATGAGGCATGAGCTATGGAGAGATGGAGATTTTCAA 119
||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||
Sbjct 74 TGAGTATCAATGGAGAAGAGCTACATGAAGCATGAGCTATGGGGAGATGGAGATTTTCAA 133
Query 120 GAAGAAGATGTGTGGGATGTTCTTGATGGATATCAATCACCGTTTATGAATAGTATTAGT 179
||||| |||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 134 GAAGATGATGTGTGGGATGTTCTTGATGGATATCAATCACCGTTTATG-AT--TAGTAGT 190
Query 180 AACCATACCACTAAAACTTCTTTCTCAACACAAACTTTACTTCCAAGTGAACCAAGAATG 239
|||||||| |||||| ||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 191 AACCATACGACTAAACCTTCTTTCTCAACCCAAACTTTACTTCCAAGCGAACCTAGAATG 250
Query 240 ATTCCTGAGAGGCAGAGGATAGAAGGAATGGCACCTATGAGACAACAGTCGGCT-CCTGT 298
||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 251 ATTCCTGAGAGGCAGAGGACAGAAGGAATGGCACCTATGAGACAACAGTCGG-TCCCTGT 309
Query 299 CAATGTCCCTGATTGGTCAATGGTTCAAAGAAAGAAGACAAAGAAAGTTGTTGATGATGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CAATGTCCCTGATTGGTCAATGGTTCAAAGAAAGAAGACAAAGAAAGTTGTTGATGATGA 369
Query 359 GAATGTGTCACCTGAGGAATATTTCCTGCGGCGCAGTCGATCATC---GTCGTCTTCGGT 415
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 370 GAATGTGTCACCGGAGGAATATTTCCTGCGGCGCAGTCGATCATCATCGTCGTCTTCAGT 429
Query 416 TATGGAAGGAGTTGGAAGGAAACTGAAAGGAAGAGATTTGAGCAAAGTAAGGAATGCAAT 475
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TATGGAAGGAGTTGGAAGAAAACTGAAAGGAAGAGATTTGAGCAAAGTAAGGAATGCAAT 489
Query 476 ATTGAAGCAAACTGGATTTCTTGAGTAGACTAAGATTGTATAAATGTT 523
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 490 ATTGAAGCAAACTGGATTTCTTGAGTAGACCAAGATTGTATAAATGTT 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25016605206
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5