BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492104
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26940.1 | Symbols: | Galactosyltransferase family protein ... 2479 0.0
> AT4G26940.1 | Symbols: | Galactosyltransferase family protein
| chr4:13529425-13532699 REVERSE LENGTH=2022
Length=2022
Score = 2479 bits (1342), Expect = 0.0
Identities = 1516/1596 (95%), Gaps = 28/1596 (2%)
Strand=Plus/Plus
Query 1 TTCCGCGCACCAAAGGC-AAGA-ACAAAGCCACGGCTTTTCTCTCTTGTCGTTTTCTTCA 58
|||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1 TTCCACGCACCAAAGGCAAAGACACAAAGCCACGGCTTTTCTCTCTTGTCGTTTTCCACA 60
Query 59 TACATTCGTCTTTTCATAGGATCAATC-----T----A-C---ACTTTCTCTGTTAACAT 105
||||||||||||||||||||||||||| | | | |||||||||||| ||||
Sbjct 61 TACATTCGTCTTTTCATAGGATCAATCTAATATCACGATCTATACTTTCTCTGTTTACAT 120
Query 106 TTTCGTTTCCGAGGAGAAAAGTCTCGATCTTTTGGATCT-GGG--AGGTTTGGTTTGGGG 162
| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 121 TCTCGTTTCCGAGGAGAAAAGTCTCGATCTTCTGGATCTGGGGTTTGGTTTGGTTTGGGG 180
Query 163 TTGACTCGGTTTTGACTCGGGACGAGTCGTCTCTTGAGATGGATG--TCTCGTGT-TTAG 219
||||||||||||||||||||||| ||||||||| ||||||||||| |||||| | ||||
Sbjct 181 TTGACTCGGTTTTGACTCGGGACAAGTCGTCTCGTGAGATGGATGTCTCTCGTTTATTAG 240
Query 220 TAGCTCTTTGAGAGTCTGCCTTTCTGGGTTCAATAGA---TTATAGTTTCGCTTAGAAAC 276
|| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 241 TATCTCTTTGAGAGTCTGTCTTTCTGGGTTCAATAGATTCTTATAGTTTCGCTTAGAAAC 300
Query 277 A--CACACAAAGATGTCGTTGAAGCATCATCACAGAGGATTAGAGCTCTCTGCTTCGAAA 334
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGCACAAAAAGATGTCGTTGAAGCATCATCACAGAGGATTAGAGCTCTCTGCTTCGAAG 360
Query 335 AGTTTTGTCTCAAAGAAATGGACTTTATTTCTATGTATCGGTTTCTTCTGCGCAGGAATT 394
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 AGTTTTGTCTCAAAGAAATGGACTTTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATT 420
Query 395 CTCTTCTCCGACAGAATGTGGCCAGAGCCTGAAGCCAATGTTGTATCAAGGGACACAGTA 454
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 CTCTTCTCCGACAGAATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTA 480
Query 455 GCGTCAGATGAGCGGCTGAGGTTAGAGTCTGATGACTGTGATTCATCAAAAAAGGGTTTG 514
|| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 GCATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAAAAGGGTTTA 540
Query 515 AAGCGTGAATCGAAAGACATCCTTGGAGAAGTTTACAAGAGTCCAGATGCAATTCAAACG 574
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 AAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGTCCAGATGCAATTCAAACG 600
Query 575 CTTGATAAAACGATTTCAAATCTGGAAAAC-GAATTGGCGGCTGCAAGAGCTGCGCAAGA 633
|||||||||||||||||||| |||| |||| ||| |||| | ||||||||||||||||||
Sbjct 601 CTTGATAAAACGATTTCAAAGCTGG-AAACAGAACTGGCCGATGCAAGAGCTGCGCAAGA 659
Query 634 ATCCATCATGAATGGTTCACCAGTTTCTGATGACTTTAAGCTTCCTGAAACTGTCACTAA 693
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 ATCTATCATGAATGGTTCACCAGTTTCTGATGACTTTAAGCTCCCTGAAACTGTCACTAA 719
Query 694 AAGAAAGTATCTGATGGTTGTTGGGGTAAATACTGCGTTTAGCAGCAGAAAGCGTAGGGA 753
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 720 AAGAAAGTATCTGATGGTTGTTGGTGTTAATACTGCGTTTAGCAGCAGAAAGCGCAGGGA 779
Query 754 TTCAGTCCGTGCTACTTGGATGCCTCCCGGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAA 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTCAGTCCGTGCTACTTGGATGCCTCCCGGTGAGGAGAGAAAGAAGCTCGAGGAAGAGAA 839
Query 814 AGGGATTGTGATGCGGTTTGTGATAGGCCATAGTGCTACTCCTGGTGGAATTCTTGATAG 873
|||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 840 AGGGATCGTGATGCGGTTTGTGATAGGCCATAGTTCTACTCCCGGTGGAATTCTTGATAG 899
Query 874 AGCGATTCAGGCTGAAGAAAGTAAACATGGAGACTTCTTGAGGCTGGATCATGTTGAAGG 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGCGATTCAGGCTGAAGAAAGTAAACATGGAGACTTCTTGAGGCTGGATCATGTTGAAGG 959
Query 934 TTATCTCGAGCTGTCAGCAAAGACTAAAACTTACTTTACCACGGCTTTTGCAATGTGGGA 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTATCTCGAGCTGTCAGCAAAGACTAAAACTTACTTTACCACGGCTTTTGCAATGTGGGA 1019
Query 994 TGCAGACTTCTACGTGAAAGTCGATGATGATGTGCATGTAAATATAGCCACTCTCGGAGC 1053
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1020 TGCAGACTTCTACGTCAAAGTCGATGATGATGTGCATGTAAATATAGCCACGCTTGGAGC 1079
Query 1054 AGAATTAGCAAGATACCGGATGAAGCCTCGAGTCTACATTGGTTGCATGAAATCTGGACC 1113
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1080 AGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACC 1139
Query 1114 CGTTCTTGCTCAGAAAGGAGTGCGATATCATGAACCCGAATACTGGAAATTTGGAGAAGA 1173
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGTTCTTGCTCAGAAAGGAGTGAGATATCATGAACCCGAATACTGGAAATTTGGAGAAGA 1199
Query 1174 GGGTAACAAGTACTTCCGCCATGCCACTGGTCAGCTCTATGCAATTTCCAGGGAATTGGC 1233
||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1200 GGGTAACAAATACTTCCGCCATGCCACAGGTCAGCTCTATGCAATATCCAGGGAGTTGGC 1259
Query 1234 GTCTTACATATCGATAAACCAAAACGTACTTCACAAATATGTGAATGAGGATGTCTCTTT 1293
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 GTCTTACATATCGATAAACCAAAACGTACTTCACAAATATGTGAATGAAGATGTCTCTTT 1319
Query 1294 AGGATCATGGTTTCTTGGATTAGATGTGGAACATGTAGATGACCGTAGGCTATGTTGTGG 1353
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 AGGATCATGGTTTCTTGGATTAGATGTGGAGCATGTAGATGACCGTAGGCTATGTTGTGG 1379
Query 1354 TACAACAGATTGTGAGTGGAAAGCGCAGGCGGGCAACATCTGTGTTGCCTCGTTCGATTG 1413
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TACAACAGATTGTGAGTGGAAGGCGCAGGCGGGCAACATCTGTGTTGCCTCGTTCGATTG 1439
Query 1414 GAGCTGCAGTGGGATTTGTAGATCAGCGGATCGGATGAAGGATGTTCATCGGAGGTGTGG 1473
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1440 GAGCTGCAGTGGGATTTGTAGATCAGCGGATAGGATGAAGGATGTTCATCGTAGGTGTGG 1499
Query 1474 AGAAGGTGAAAAGGCTCTCCTGGCTGCATCTTTCTGAACACAATAACTAAAGAAACACAT 1533
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AGAAGGTGAAAAGGCCCTTCTGGCTGCATCTTTCTGAACACAATAACTAAAGAAACACAT 1559
Query 1534 TGAGGAAGAAGAGTACAGAGACAAATCCGCTCGACA 1569
||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGAGGAAGAAGAGTACAGAGACAAATCCGCTCGACA 1595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78614053470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5