BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492106
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26930.1 | Symbols: MYB97, AtMYB97 | myb domain protein 97 |... 1554 0.0
AT5G55020.1 | Symbols: ATMYB120, MYB120 | myb domain protein 12... 313 3e-84
AT2G16720.1 | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein... 100 2e-20
AT1G22640.1 | Symbols: ATMYB3, MYB3 | myb domain protein 3 | ch... 93.5 4e-18
AT1G18570.1 | Symbols: MYB51, AtMYB51, BW51A, BW51B, HIG1 | myb... 78.7 1e-13
> AT4G26930.1 | Symbols: MYB97, AtMYB97 | myb domain protein 97
| chr4:13527770-13529172 FORWARD LENGTH=1170
Length=1170
Score = 1554 bits (841), Expect = 0.0
Identities = 1077/1183 (91%), Gaps = 47/1183 (4%)
Strand=Plus/Plus
Query 1 ATGATCGTATACGGTGGGGGAGCATCCGAGGACGGTGGAGGTGGACGGGTGGTTCTGAAG 60
|||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1 ATGATCGTGTACGGTGGGGGAGCATCCGAGGACGGTGAAGGTGGAGGGGTGGTTCTGAAG 60
Query 61 AAAGGGCCATGGACGGTGGCGGAGGACGAGACTTTGGCGGCTTATGTACGGGAATACGGT 120
|||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 61 AAAGGGCCATGGACGGTGGCCGAGGACGAGACACTGGCGGCTTACGTACGGGAATACGGT 120
Query 121 GAAGGGAACTGGAATGCTGTTCAGAAGAAGACGTGGCTGGCTCGGTGCGGTAAGAGCTGC 180
||||||||||||||| |||||||||||||||| ||||||||| |||| || |||||||||
Sbjct 121 GAAGGGAACTGGAATTCTGTTCAGAAGAAGACATGGCTGGCTAGGTGTGGCAAGAGCTGC 180
Query 181 CGCCTCCGCTGGGCTAACCACCTCCGACCTAATCTCAGGAAAGGCTCCTTCACCCCTGAG 240
||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 181 CGCCTCCGCTGGGCTAACCACTTACGACCTAATCTCAGGAAAGGCTCCTTCACCCCCGAG 240
Query 241 GAAGAACGTCTCATCATACAACTCCATTCTCAGCTCGGCAACAAATGGGCTCGCATGGCT 300
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 241 GAAGAACGTCTCATCATACAACTCCACTCTCAGCTAGGCAACAAATGGGCTCGCATGGCT 300
Query 301 GCTCAGTTACCAGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACGAGGTTGAAA 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTCAGTTACCAGGCAGAACAGATAACGAGATCAAGAACTACTGGAACACGAGGTTGAAA 360
Query 361 CGCTTCCAACGCCAAGGCCTCCCTCTATACCCTCCAG-ATATTTCCCCAAGCAATCATCA 419
|||||||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||
Sbjct 361 CGCTTCCAACGCCAAGGCCTCCCTCTCTACCCTCCAGAATA-TTCCCAAAACAATCATCA 419
Query 420 ACAACAAATGTATCCTCAACAGCCCAACACACCCTCCTCACCTCTCCCGTCCCCAACACC 479
|||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 420 ACAACAAATGTATCCTCAACAG---------CCCTCCTCACCTCTCCCGTCCCAAACACC 470
Query 480 CGCTTCTTCTTTTACCTTTCCTCTTCTCCAACCGCCTTCTCTGTGTCCCAAACGTTGTTA 539
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 471 TGCTTCTTCCTTTACCTTTCCTCTCCTCCAACCGCCTTCTCTGTGTCCCAAACGTTGTTA 530
Query 540 CAACACTGCCTTCTCTCCCAAGGCCTC-T-TA-------T-------A----C-T-TCT- 576
|||||||||||||||||||||||||| | || | | | | |||
Sbjct 531 TAACACTGCCTTCTCTCCCAAGGCCTCATATATTTCTTCTCCAACCAATTTCCTTGTCTC 590
Query 577 -TCTCCGACCTTTCTTAACACCCATTTCC-CACTTTCCTCCTATCAGTCTACCAATCCGG 634
||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 591 GTCTCCGACCTTTCTTCACACCCA-TTCCTCTCTTTCCTCCTATCAGTCTACCAATCCGG 649
Query 635 TTTACTCCATGAAACATGAGCTCTCTTCAAACCACATTCCATTCTCCACCTCTTTAGGAG 694
|||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 650 TTTACTCCATGAAACATGAGCTCTCTTCAAACCAAATTCCATACTCTGCCTCTTTAGGAG 709
Query 695 TCTATCAAGTGAGCAAGTTCTTAGACAATGGTGATTGTAACCAAAACCTTAACACCAGTT 754
|||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||| |||
Sbjct 710 TCTATCAAGTAAGCAAGTTCTCAGACAATGGGGATTGTAACCAAAACCTGAACACCGGTT 769
Query 755 TGCATACAAATACCTGCCAGCTGTTAGAGGATCTTATGGAGGAGGCCGAGGCTTTAGCTG 814
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 770 TGCATACAAATACCTGTCAGCTGTTAGAGGATCTTATGGAGGAGGCCGAGGCTCTAGCTG 829
Query 815 ATAGCTTTCGTGCTCCTAAGCGGAGACAACTCATGGCTGCTCTCCAGGACAACAACAACA 874
||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 830 ATAGCTTTCGTGCTCCTAAGCGGAGACAAATCATGGCTGCGCTTGAGGACAACAACAACA 889
Query 875 AC------TTCTTCTCGGGTAGTTTT-GGACATTGTGGTTCTTCCAACAATCTAT-TTCC 926
|| || |||||||| || ||| |||||| ||| ||||||||||| ||||| ||||
Sbjct 890 ACAACAACTTTTTCTCGGG-AGGTTTCGGACATCGTGTTTCTTCCAACAGTCTATGTTCC 948
Query 927 CTTGCAAGGTTTAACACCAAAGGAAGACGAGTGTCTCCAGATGAATACGATGCAAGATGA 986
|||||||||||||||||||||||||| |||| |||||||||||| || |||||||||||
Sbjct 949 -TTGCAAGGTTTAACACCAAAGGAAGATGAGTCTCTCCAGATGAACACAATGCAAGATGA 1007
Query 987 GGACATAACAAAGCTTCTTGACTGGGGAAGTGAAAGCGAAGAGATCTCAAACGGGCAATC 1046
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1008 GGACATAACAAAGCTTCTTGACTGGGGAAGTGAAAGTGAAGAAATCTCAAACGGGCAATC 1067
Query 1047 CTCTGCGATAACAACAGAGGACAGCCTTGTCCTTGACGATCACCAGTTCGCTTTGCTGTT 1106
||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct 1068 CTCTGTGATAACAACAGAGAACAACCTTGTCCTTGACGATCACCAGTTCGCTTTTCTGTT 1127
Query 1107 TCCAGTTGACGATGACACCAACAACTTGCCAGGGATCTGCTAG 1149
||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1128 TCCAGTTGATGATGACACCAACAACTTGCCAGGGATCTGCTAG 1170
> AT5G55020.1 | Symbols: ATMYB120, MYB120 | myb domain protein
120 | chr5:22324599-22326248 REVERSE LENGTH=1572
Length=1572
Score = 313 bits (169), Expect = 3e-84
Identities = 304/368 (83%), Gaps = 14/368 (4%)
Strand=Plus/Plus
Query 56 TGAAGAAAGGGCCATGGACGGTGGCGGAGGACGAG--ACTTTGGCGGCTTATG-TACGGG 112
|||||||||| |||||||||| |||||| || ||| || || || || || | || | |
Sbjct 77 TGAAGAAAGGTCCATGGACGGCGGCGGAAGATGAGATAC-TT-GCTGCGTACGTTA-GAG 133
Query 113 A-ATACGGTGAAGGGAACTGGAATGCTGTTCAGAAGAAGACGTGG-CTGGCTCGGTGCGG 170
| | ||||||||||||| ||||| || |||||||| || || || ||||||| |||||
Sbjct 134 AGA-ACGGTGAAGGGAATTGGAACGCCGTTCAGAAAAACAC-AGGTTTGGCTCGTTGCGG 191
Query 171 TAAGAGCTGCCGCCTCCGCTGGGCTAACCACCTCCGACCTAATCTCAGGAAAGGCTCCTT 230
|| |||||||| || || ||||| || ||||||||||| ||||| | |||||||| ||
Sbjct 192 CAAAAGCTGCCGTCTTCGATGGGCCAATCACCTCCGACCAAATCTGAAAAAAGGCTCTTT 251
Query 231 CACCCCTGAGGAAGAACGTCTCATCATACAACTCCATTCTCAGCTCGGCAACAAATGGGC 290
|||| ||| ||||||||||||||||| || || ||| ||||||| || |||||||||||
Sbjct 252 CACCGGTGACGAAGAACGTCTCATCATTCAGCTTCATGCTCAGCTTGGTAACAAATGGGC 311
Query 291 TCGCATGGCTGCTCAGTTACCAGGAAGAACAGATAACGAGATCAAGAACTACTGGAACAC 350
||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct 312 TCGCATGGCTGCTCAGTTACCGGGAAGAACAGACAACGAGATTAAGAACTATTGGAACAC 371
Query 351 GAGGTTGAAACG-CTTCCAACGCCAAGGCCTCCCTCTATACCCTCCAGATATT-TCCCCA 408
||| |||||||| |||| |||||||| || ||||| || |||||||||||| |||| |
Sbjct 372 GAGATTGAAACGACTTCTT-CGCCAAGGACTTCCTCTTTATCCTCCAGATATTATCCCTA 430
Query 409 AGCAATCA 416
| || |||
Sbjct 431 ACCA-TCA 437
> AT2G16720.1 | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein
7 | chr2:7255529-7256580 REVERSE LENGTH=980
Length=980
Score = 100 bits (54), Expect = 2e-20
Identities = 151/196 (77%), Gaps = 14/196 (7%)
Strand=Plus/Plus
Query 162 TCGGTGCGGTAAGAGCTGCCGCCTCCGCTGGGCTAACCACCTCCGACCTAATCTCAGGAA 221
||| |||||||| |||||||| || || ||| |||| | ||||||||| |||||| ||
Sbjct 171 TCGCTGCGGTAAAAGCTGCCGTCTTCGGTGGATTAACTATCTCCGACCTGATCTCA-AAA 229
Query 222 -AGGCTCCTTCACCCCTGAGGAAGAACG-TCTCATCATACAA-CTCCAT--TCTCAGCTC 276
||| ||| || | ||| |||| | | || ||||| ||| || ||| ||| ||
Sbjct 230 GAGGAAACTTTACACATGATGAAG-ATGAACTTATCAT-CAAGCTTCATAGCCTC--CTA 285
Query 277 GGCAACAAATGGGC-TCGCATGGCTGCTCAG-TTACCAGGAAGAACAGATAACGAGATCA 334
|||||||| ||| | | | || || || || ||||| ||||||||||||||||||||||
Sbjct 286 GGCAACAAGTGGTCTTTG-ATTGCGGC-GAGATTACCTGGAAGAACAGATAACGAGATCA 343
Query 335 AGAACTACTGGAACAC 350
||||||||||||||||
Sbjct 344 AGAACTACTGGAACAC 359
> AT1G22640.1 | Symbols: ATMYB3, MYB3 | myb domain protein 3 |
chr1:8006195-8007428 FORWARD LENGTH=1077
Length=1077
Score = 93.5 bits (50), Expect = 4e-18
Identities = 87/104 (84%), Gaps = 6/104 (6%)
Strand=Plus/Plus
Query 250 CTCATCATACAA-CTCCAT-TCTCAGCTCGGCAACAAATGGGCTCGCATGGCTGCTCAG- 306
|||||||| ||| |||||| || |||||| ||||||||| || || |||| ||
Sbjct 323 CTCATCAT-CAAGCTCCATAGCT-TGCTCGGTAACAAATGGTCTTTAATAGCTG-GGAGA 379
Query 307 TTACCAGGAAGAACAGATAACGAGATCAAGAACTACTGGAACAC 350
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 380 TTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAACAC 423
> AT1G18570.1 | Symbols: MYB51, AtMYB51, BW51A, BW51B, HIG1 | myb
domain protein 51 | chr1:6389411-6391267 FORWARD LENGTH=1654
Length=1654
Score = 78.7 bits (42), Expect = 1e-13
Identities = 67/78 (86%), Gaps = 6/78 (8%)
Strand=Plus/Plus
Query 276 CGGCAACAAATGGGCTCGC-ATGGCTGC-TCAG-TTACCAGGAAGAACAGATAACGAGAT 332
||||||||||||| || || || ||| | | | ||||||||||||| |||||||||||
Sbjct 612 CGGCAACAAATGGTCT-GCTATAGCT-CGT-GGACTACCAGGAAGAACCGATAACGAGAT 668
Query 333 CAAGAACTACTGGAACAC 350
||||||||||||||||||
Sbjct 669 CAAGAACTACTGGAACAC 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5