BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492107
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26920.1 | Symbols: | START (StAR-related lipid-transfer) l... 900 0.0
> AT4G26920.1 | Symbols: | START (StAR-related lipid-transfer)
lipid-binding domain | chr4:13525031-13527172 FORWARD LENGTH=1386
Length=1386
Score = 900 bits (487), Expect = 0.0
Identities = 604/661 (91%), Gaps = 6/661 (1%)
Strand=Plus/Plus
Query 923 ACAACTTGCTCGAAGTATCAAGGCATATGGTTCACTTATTTTGCTCCGGTACGTGTGGGG 982
||||||||||| ||| ||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 728 ACAACTTGCTCCAAGCATCAAAACGTTTGGTTCACATATTTTGCTCCGGTACGTGTGGGG 787
Query 983 TAATCGGGTACCAATGGAGGCGGCTCGGTGCGGGTCGAACGTTTGACGTCAGAGTTTTCA 1042
|||||||| ||| | ||||| |||||||||||||||||| ||||||||||||||||| ||
Sbjct 788 TAATCGGGAACCGAGGGAGGTGGCTCGGTGCGGGTCGAAGGTTTGACGTCAGAGTTTCCA 847
Query 1043 CTCGAGAGAGTCCAGACATGATAAGGCACCCTTGTGGTATTATTAGCGCTAGCGGTTTGG 1102
|| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 848 GTCTAGAGAGTCGGGACATGATAAGGCACCCTTATGGTATTATTAGCGCTAGCGGTTTGA 907
Query 1103 CTAAAATACATGCTAAACCGGAAATGCTATTTCCTTTCATCTACGGTGTGAAGAAACGAG 1162
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||
Sbjct 908 CTAAAATACATGCTAAACCGGAAATACTATTTCCTTTAATCTACGGTGTAAAGAAACTAG 967
Query 1163 AGATA-TTCAACCACTTACGATTATCTGGAAATGGTTTAAAACAAGTGCTTCGGATCACA 1221
||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 968 AGATACAT-AACCACTTACGATTATCTGGAAATGATTTAAAACAAGTCCTTCGGATCACA 1026
Query 1222 AGAGACGACACTACTCCGAGGAATGACGTCTCCCTATTCAGTTTCCGGCTGAATAATTCT 1281
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AGAGACGACATTACTTCGAGGAATGACGTCTCCCTATTCAGTTTCCGGCTGAATAATTCT 1086
Query 1282 ACGGAGGTGTTTTTGCTTCAAGAAGCATACAATGAGGCATCATCGTCGATGGTGATCCAC 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 ACGGAGGTGTTTTTGCTTCAAGAAGCATACAATGAGGCATCATCGTCGATGGTGATCCAC 1146
Query 1342 TCGATTCTTGACGAGTCATCTCTT-CGGAAAATTATAAACGGTGATAGTTCGTTCTCCAT 1400
|| || ||||||| |||||||||| || || |||||||||||||| |||| | |||| |
Sbjct 1147 TCCATACTTGACGTGTCATCTCTTGCG-AAGATTATAAACGGTGACCGTTCCTACTCCTT 1205
Query 1401 TACCTATCCGTGTGGATTCACCATAATGCCCGGCCAAAACTCAGGCGATGAAGAAGCTGG 1460
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1206 TACCTATCCGTGTGGATTCACCATAATGCCGGGCCAAAACTCCGGCGATGAAGACGCTGG 1265
Query 1461 ATGTGTTGTGTCGGTTGGATTTCAGGCGATTGTAACTGAAGCGATTGTAGCGAATACAAT 1520
|||||||||||| |||||||||| | |||||| |||||||| |||||||||||||||| |
Sbjct 1266 ATGTGTTGTGTCTGTTGGATTTCTGACGATTGCAACTGAAGAGATTGTAGCGAATACACT 1325
Query 1521 GATGAGTAATGTGGAGA-AG-ACTTTATCTGATACTTTTACAAATTTCGAGAATGTCTTA 1578
| ||||| ||||||||| || | |||||||| |||| |||||||||||||||||||||||
Sbjct 1326 GGTGAGTGATGTGGAGAGAGGAATTTATCTGCTACTATTACAAATTTCGAGAATGTCTTA 1385
Query 1579 G 1579
|
Sbjct 1386 G 1386
Score = 839 bits (454), Expect = 0.0
Identities = 590/652 (90%), Gaps = 23/652 (4%)
Strand=Plus/Plus
Query 60 GCAGTTCGAGAATGCTCTTTCGCGGTCAGACAGA-GAGACACTCACTTCCTTCACAATGT 118
|||||||||||||||| |||||||||| |||| | |||||||||| | ||||||||||||
Sbjct 78 GCAGTTCGAGAATGCTGTTTCGCGGTCTGACA-ATGAGACACTCAATGCCTTCACAATGT 136
Query 119 TATCGGATTTTTTGG-GACAA-CAATTACCC-AACTTTTCCTCGTACTCGCTTAACTTAA 175
||| ||| ||||||| || || ||||| ||| ||| | |||||||||| ||||||||| |
Sbjct 137 TATTGGA-TTTTTGGAGA-AATCAATT-CCCGAACGTGTCCTCGTACTTGCTTAACTT-A 192
Query 176 TGGG-GGTCTTGGCATGTATAGTCAACGAAATTATTGCTTTGGCAACGCCCGAGTCTCCT 234
|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 193 TGGGTGGTCTTGGCATGTATAGTCAACGAAATTATTGCTTTAGCAACGCTCGAGTCTCCT 252
Query 235 TTGTGGAGTAGATCACAATGTGAAAACATAGAGATGCTGAATCTGAACGAGTACTACTCT 294
|||||||| ||||||||| ||| | ||||||||||| ||||||||| |||||||||
Sbjct 253 TTGTGGAGGAGATCACAACGTG-----A-AGAGATGCTGACTCTGAACGAATACTACTCT 306
Query 295 CAATTCTTTCCTTGGTATGCAAAAAATGTCCCAAGGTTTTTCCATGAGGCGTCAAGAGCT 354
| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 307 CGATTCTTTCCTTGGTACGCAAAAAACGTCCCAAGGTTTGTCCATGAGGCGTCAAGAGCT 366
Query 355 TCTGCAGTAATCCGCGTTGATGCTTCATGGCTTGTGAGAAAACTTGAAAATCCTGTGCGT 414
|||| |||||||| ||||||||||||||||||| ||| ||||||| |||| ||| |||||
Sbjct 367 TCTGAAGTAATCCACGTTGATGCTTCATGGCTTTTGACAAAACTTAAAAACCCTATGCGT 426
Query 415 TGGGTGAGTATTTTCCCATCACTCGTTGGAAATGTGTCAATCGAATCAAGCAACGACGAT 474
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TGGGTGACTATTTTCCCATCACTCGTTGGAAATGTGTCAATCGAATCAAGCAACGACGAT 486
Query 475 GTTA--A-GATGATTGATATGGAGTTTCTAACATTAATCACCCCGGTAATTCCGACCCGA 531
|||| | ||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 487 GTTAGGATGATCATTGATATGGAGTTTCTGACATTAATTACCCCGGTCATTCCGACCCGA 546
Query 532 AAAATAAAAGTTCTCCGATATTGTCACCGTATAGGAAATGATACATGGATTATAGCAGAT 591
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 547 AAAGTAAAAGTTCTCCGATATTGTCACCGTATAGCAAATGATACATGGATTATAGCGGAT 606
Query 592 ATCTCCATGTATTTAAGCTCCTATTCAGACGATTTACGACCTGAGTTTCTCAGATTTCCT 651
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 ATCTCCATGTACTTAAGCTCCTATTCAGACGATTTACGACCTGAGTTTCTCAGATTTCCT 666
Query 652 TCTGGATTTATTATTCAACATCTTCCAAATGGATATTCAAAGGTAAC-AATT 702
||||||||||||||| ||||| | ||| ||||||||| || |||| ||||
Sbjct 667 TCTGGATTTATTATTAAACATGTAGCAA--GGATATTCAGAG-TAACTAATT 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5