BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492108
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26910.1 | Symbols: | Dihydrolipoamide succinyltransferase ... 2410 0.0
AT5G55070.1 | Symbols: | Dihydrolipoamide succinyltransferase ... 1284 0.0
> AT4G26910.1 | Symbols: | Dihydrolipoamide succinyltransferase
| chr4:13519811-13523222 REVERSE LENGTH=1815
Length=1815
Score = 2410 bits (1305), Expect = 0.0
Identities = 1433/1497 (96%), Gaps = 0/1497 (0%)
Strand=Plus/Plus
Query 1 TCTCGTATGCGTTTGCCGATCTTCTCGATTCTCCAATTCCAAACCCTATCATTTTGATTC 60
|||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 5 TCTCATATGCGTTTACCGATCTTCTCGATTCTCCAATTCCAAACCCTAACATTTTGATTA 64
Query 61 GTCCTTCCGGGTTTCCACAACCTTGAGAGATTCGGTACAAATGATGTTGCGTGCTGTTAT 120
||||||| ||||||||||| ||||||||||||||| || ||||||| |||||||||||||
Sbjct 65 GTCCTTCTGGGTTTCCACAGCCTTGAGAGATTCGGAACCAATGATGATGCGTGCTGTTAT 124
Query 121 AAGGAGAGCTGCCAGTAAAGGCTCTTCTCCTTCGTTATTCGGAAAATCACTGCAATCTTC 180
|||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct 125 AAGGAGAGCTGCCAGTAATGGCTCTTCTCCTTCGTTATTCGCAAAATCACTGCAGTCTTC 184
Query 181 TCGTGTTGCTGCATCTTCCCCAAGCTTGCTAAGAGGTTCAGAAACAGGGGCATTTCTGCA 240
||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 185 TCGTGTTGCTGCATCTTCCCCTAGCTTGCTATCAGGTTCAGAAACAGGGGCATATCTGCA 244
Query 241 TTGTGGAAATCATGCTCGTAGCTTTCATAACCTTGCTTTGCCAGCAGGGAACTCGGGCAT 300
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TCGTGGAAATCATGCTCATAGCTTTCATAACCTTGCTTTGCCAGCAGGGAACTCGGGCAT 304
Query 301 CTCGAGATCAGCGAGTTTAGTTTCCTCTACCCTACAAAGATGGGTCAGGCCTTTTTCATC 360
|||||| || |||||||||||||| || ||||| |||||||||||||||||||||||| |
Sbjct 305 CTCGAGGTCGGCGAGTTTAGTTTCTTCAACCCTGCAAAGATGGGTCAGGCCTTTTTCAGC 364
Query 361 TGAAAGTGGAGATACTGTGGAAGCTGTTGTGCCTCATATGGGGGAATCAATCACCGATGG 420
||||| ||||||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 365 TGAAACTGGAGATACCGTGGAAGCAGTTGTGCCTCATATGGGGGAATCAATTACTGATGG 424
Query 421 CACCTTAGCCACCTTTCTGAAGAAACCTGGTGAGAGAGTCCAGGCTGATGAGGCTATTGC 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CACCTTGGCCACCTTTCTGAAGAAACCTGGTGAGAGAGTCCAGGCTGATGAGGCTATTGC 484
Query 481 ACAAATTGAAACTGATAAGGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAATCCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 ACAAATTGAAACTGATAAGGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAATCCA 544
Query 541 AGAGTTTCTAGTCAAAGAAGGAGATACGGTAGAACCAGGAACCAAGGTCGCTATTATATC 600
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 545 AGAGTTTCTAGTCAACGAAGGAGATACTGTAGAACCAGGAACCAAGGTCGCTATTATATC 604
Query 601 AAAGTCTGAGGATGCTGCATCTCATGTTACCCCCTCCCAGAAGATACCAGAGGCATCTGA 660
||||||||||||| |||||||||| ||||||||||| ||||||||||||||| || ||||
Sbjct 605 AAAGTCTGAGGATACTGCATCTCAGGTTACCCCCTCTCAGAAGATACCAGAGACAACTGA 664
Query 661 TGCCAAGCCTTCTCCTCCTGCTGAAGATAAGCAGAAGCCCAAAGTGGAAAGTGCTCCTGT 720
| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 665 TACCAAACCTTCTCCTCCTGCTGAAGATAAGCAGAAGCCCAGAGTGGAAAGTGCTCCTGT 724
Query 721 AGCAGAGAAACCCAAAGCACCATCCTCACCACCTCCACCCAAACAATCTGCTAAAGAACC 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 725 AGCAGAGAAACCCAAAGCACCATCCTCACCACCTCCACCCAAACAGTCTGCTAAAGAACC 784
Query 781 GCAGCTCCCTCCTAAGGAAAGAGAAAGACGGGTTCCTATGACAAGACTTCGTAAAAGGGT 840
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| | ||
Sbjct 785 GCAGCTTCCTCCTAAGGAAAGAGAAAGACGGGTTCCGATGACAAGACTTCGGAAACGAGT 844
Query 841 TGCAACAAGATTGAAAGACTCTCAAAATACTTTCGCATTGCTGACAACTTTCAATGAAGT 900
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 845 TGCAACAAGATTGAAAGACTCTCAAAATACTTTCGCGTTGCTGACAACTTTCAATGAAGT 904
Query 901 TGATATGACAAATTTGATGAAGCTCCGATCCCAATACAAGGATGCATTTTATGAAAAACA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 905 TGATATGACAAATTTGATGAAGCTCCGATCCCAATACAAGGATGCATTTTATGAAAAGCA 964
Query 961 TGGAGTGAAGTTGGGGCTTATGTCTGGATTCATTAAAGCTGCTGTTAGTGCCCTCCAGCA 1020
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 965 TGGAGTGAAGTTGGGGCTTATGTCTGGATTTATTAAAGCTGCTGTTAGCGCCCTTCAGCA 1024
Query 1021 TCAACCAGTTGTAAATGCAGTTATCGATGGGGATGATATCATATACAGAGACTATGTGGA 1080
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1025 TCAACCAGTTGTAAATGCAGTTATTGACGGGGATGATATCATATACAGAGACTATGTGGA 1084
Query 1081 TATCAGTATTGCTGTTGGTACCTCTAAGGGACTTGTAGTACCAGTCATAAGAGGTGCTGA 1140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TATCAGTATCGCTGTTGGTACCTCTAAGGGACTTGTAGTACCAGTCATAAGAGGTGCTGA 1144
Query 1141 TAAAATGAACTTTGCCGAGATAGAGAAGACGATAAACACACTTGCGAAGAAGGCAAATGA 1200
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1145 TAAAATGAACTTTGCCGAGATAGAGAAGACGATAAACTCACTTGCCAAGAAGGCAAATGA 1204
Query 1201 AGGAACCATATCCATAGATGAGATGGCTGGAGGATCATTCACCGTTTCAAATGGCGGTGT 1260
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1205 AGGAACCATATCCATAGATGAGATGGCTGGCGGATCATTCACCGTTTCAAATGGCGGTGT 1264
Query 1261 CTATGGAAGTCTCATAAGCACTCCGATCATTAACCCTCCTCAGTCTGCTATACTCGGTAT 1320
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1265 CTATGGAAGTCTCATAAGCACTCCGATCATTAATCCTCCTCAGTCTGCCATACTCGGCAT 1324
Query 1321 GCACTCGATTGTGTCACGTCCAATGGTTGTAGGAGGAAGCGTAGTGCCAAGACCAATGAT 1380
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1325 GCACTCGATTGTGTCACGTCCAATGGTAGTAGGAGGAAGCGTAGTGCCTAGACCAATGAT 1384
Query 1381 GTACGTCGCACTTACGTATGATCACAGGCTGATTGATGGTAGAGAGGCTGTCTACTTCCT 1440
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1385 GTATGTCGCACTTACGTATGATCACAGGCTGATTGATGGTAGAGAGGCTGTGTACTTCCT 1444
Query 1441 GCGCCGTGTCAAGGATGTTGTGGAGGATCCACAAAGGCTTCTTCTTGACATATAAAA 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 GCGCCGTGTCAAGGATGTTGTGGAGGATCCACAAAGGCTTCTTCTTGACATATAAAA 1501
Score = 246 bits (133), Expect = 5e-64
Identities = 237/281 (84%), Gaps = 32/281 (11%)
Strand=Plus/Plus
Query 1498 TTTTGCCAGTTATAGACCTGCAGTGTCTTTAAAACGTTTGGGAGGGTAACAACAATTTTT 1557
||||||||||||||||||||||||||||||||||||||| || |||||||||||| || |
Sbjct 1535 TTTTGCCAGTTATAGACCTGCAGTGTCTTTAAAACGTTT-GG-GGGTAACAACAA-TTCT 1591
Query 1558 TCTCTTTCAAGTTTCTTTACAGTTTCCTGAATATTGCCGGAT-GG--GAA--GGCCTCAG 1612
| ||||||||||||||||||||||||| || |||||| |||| || ||| ||||||||
Sbjct 1592 TATCTTTCAAGTTTCTTTACAGTTTCCCGAGTATTGCGGGATTGGAAGAATAGGCCTCAG 1651
Query 1613 TGTCTAAGTTCTTA-TTTGTTACAC---------CA--TATGTTCAATTTTGACTGAATA 1660
|||||| ||||||| ||| |||||| || ||||||||||||||||||||||
Sbjct 1652 TGTCTACGTTCTTACTTT-TTACACAGTTTGATACAGATATGTTCAATTTTGACTGAATA 1710
Query 1661 A-ACGGACCCTTTTGAGGTTCTTCG-ACTTGAATGATTTTTCATGACTAATAACATCTAG 1718
| | |||||||||||||| |||| | ||||||||||| | ||||||| ||||||
Sbjct 1711 AGAT--ACCCTTTTGAGGTTTTTCGGA-TTGAATGATTT--C----CTAATAAGATCTAG 1761
Query 1719 ACGAGAGAGAAGCAATATGCTTTCTTTGTATTAAATAGAAA 1759
|||||||||||| | |||||||||||||||||||||||||
Sbjct 1762 ACGAGAGAGAAGTTACATGCTTTCTTTGTATTAAATAGAAA 1802
> AT5G55070.1 | Symbols: | Dihydrolipoamide succinyltransferase
| chr5:22347211-22350817 FORWARD LENGTH=1998
Length=1998
Score = 1284 bits (695), Expect = 0.0
Identities = 1194/1431 (83%), Gaps = 49/1431 (3%)
Strand=Plus/Plus
Query 87 GAGATTCGGTACAAATGATGTTGCGTGCTGTTATAAGGAGAGCTGCCAGTAAAGGCTCTT 146
|||||| ||| | |||||||||||||||||| | ||||||||| ||| || ||||||||
Sbjct 183 GAGATTTGGTGC-GATGATGTTGCGTGCTGTTTTTAGGAGAGCTTCCATTAGAGGCTCTT 241
Query 147 C-TC--CTTCGTTATTCGGAAAATCACTGCAATCTTCTCGTGTTGCTGCATCTTCCCCAA 203
| || ||||| ||| ||||||||| ||||||| ||||||||||| | || | | |||
Sbjct 242 CTTCTGCTTCGGGATTGGGAAAATCATTGCAATCCTCTCGTGTTGCAGTGTC-TGCTCAA 300
Query 204 GCTTGCTA-AGAGGTTCAGAAACAGGGGCATTTCTGCATTGTGGAAATCATGCTCGTAGC 262
|| | | | ||||| ||||| | | || ||| | ||||||| ||||||| ||||
Sbjct 301 --TTTC-ATTCTGTTTCAGCAACAGAGACGTTGGTGCCTCGTGGAAACCATGCTCATAGC 357
Query 263 TTTCATAACC-TTGCTTTG-CCA-GCAG-GGA-ACTCGGGC-ATCTCGA-GATCAGCGAG 315
|| ||| ||| || | ||| ||| | | | ||| | | | | | |||| || |
Sbjct 358 TTCCATCACCGTT-C-TTGTCCAGGGTGTCCAGACT-GTTCAAGGACTATTATCAACG-G 413
Query 316 TTTA-GTTTCCTCTA-CCCTACAAAGATGGGTCAGGCCTTTTTCATCTGAAAGTGGAGAT 373
||| | | | |||| ||||||||||||||||| ||||||||||| ||||| |||
Sbjct 414 -TTACCAAGGCAC-AGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGAT 471
Query 374 ACT-GTGGAAGCTGTTGTGCCTCATATGGGGGAATCAATCACCGATGGCACCTTAGCCAC 432
| ||||||||||||||||| || ||||| ||||||||||| ||||||||| ||||| |
Sbjct 472 -GTCGTGGAAGCTGTTGTGCCACACATGGGTGAATCAATCACTGATGGCACCCTAGCCGC 530
Query 433 CTTTCTGAAGAAACCTGGTGAGAGAGTCCAGGCTGATGAGGCTATTGCACAAATTGAAAC 492
|||||||||||||||||| || ||||| | |||||||||||||||||||||||||||||
Sbjct 531 CTTTCTGAAGAAACCTGGCGATAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAAC 590
Query 493 TGATAAGGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAATCCAAGAGTTTCTAGT 552
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 591 TGACAAGGTTACAATAGATATTGCTAGCCCAGCAAGTGGTGTGATCCAAGAGTTTCTAGT 650
Query 553 CAAAGAAGGAGATACGGTAGAACCAGGAACCAAGGTCGCTATTATATC-AAAGTCTGAGG 611
||| ||||||||||| || |||||||||| |||||| || | || || | | |||| ||
Sbjct 651 CAAGGAAGGAGATACTGTTGAACCAGGAAACAAGGTTGCAAGAATTTCTACA-TCTGCGG 709
Query 612 ATGCTGCATCTCATGTTACCCCCTCCCAGAAGATACCAGAGGCATCTGATGCCAAGCCTT 671
|||||| |||||||| | ||||| | ||| ||||||| | ||| | |||||||||
Sbjct 710 ATGCTGTGTCTCATGTGGCACCCTCAGAAAAGGCACCAGAGAAACCTGCTCCCAAGCCTT 769
Query 672 CTCCTCCTGCTGAAGATAAGCAGAAGCCCAAAGTGGAAAGTGCTC-CTGTAGCAGAGAAA 730
|||||||||| | | ||||||||||||| |||||| | | || |||||||||
Sbjct 770 CTCCTCCTGC------T--G-AGAAGCCCAAAGTTGAAAGTAC-CAAAGTTGCAGAGAAA 819
Query 731 CCCAAAGCACCAT--CC-TCA---CCACCTCCACCCAAACAATCTGCTAAAGAACCGCAG 784
||||| ||||||| || || ||||| ||| ||||||| || |||||||||||||||
Sbjct 820 CCCAAGGCACCATCACCGCCACCTCCACCGCCATCCAAACAGTCAGCTAAAGAACCGCAG 879
Query 785 CTCCCTCCTAAGGAAAGAGAAAGACGGGTTCCTATGACAAGACTTCGTAAAAGGGTTGCA 844
|| || |||||||| || ||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 880 CTTCCACCTAAGGATAGGGAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCA 939
Query 845 ACAAGATTGAAAGACTCTCAAAATACTTTCGCATTGCTGACAACTTTCAATGAAGTTGAT 904
|| || |||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct 940 ACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGAT 999
Query 905 ATGACAAATTTGATGAAGCTCCGATCCCAATACAAGGATGCATTTTAT-GAAAAACATGG 963
||||| ||| |||||||||||||||| || ||||||||||| |||| | ||||| || ||
Sbjct 1000 ATGACTAATCTGATGAAGCTCCGATCTCAGTACAAGGATGC-TTTTCTTGAAAAGCACGG 1058
Query 964 AGTGAAGTTGGGGCTTATGTCTGGATTCATTAAAGCTGCTGTTAGTGCCCTCCAGCATCA 1023
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1059 AGTGAAGTTGGGGCTTATGTCTGGTTTCATTAAGGCTGCTGTTAGTGCCCTCCAGCACCA 1118
Query 1024 ACCAGTTGTAAATGCAGTTATCGATGGGGATGATATCATATACAGAGACTATGTGGATAT 1083
||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1119 ACCTGTAGTAAATGCAGTTATCGATGGAGATGATATCATTTACAGAGACTACGTGGATAT 1178
Query 1084 CAGTATTGCTGTTGGTACCTCTAAGGGACTTGTAGTACCAGTCATAAGAGGTGCTGATAA 1143
|||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||| ||
Sbjct 1179 CAGTATCGCTGTTGGTACCTCTAAGGGTCTTGTAGTTCCAGTCATAAGAGATGCTGACAA 1238
Query 1144 AATGAACTTTGCCGAGATAGAGAAGACGATAAACACACTTGCGAAGAAGGCAAATGAAGG 1203
|||||||||||| || |||||||| || |||||| || || |||||||| | ||||||
Sbjct 1239 AATGAACTTTGCTGACATAGAGAAAACAATAAACGGTCTCGCTAAGAAGGCTACTGAAGG 1298
Query 1204 AACCATATCCATAGATGAGATGGCTGGAGGATCATTCACCGTTTCAAATGGCGGTGTCTA 1263
||||||||| || ||||||||||| |||||||||||||| || |||||||| ||||||||
Sbjct 1299 AACCATATCAATCGATGAGATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTA 1358
Query 1264 TGGAAGTCTCATAAGCACTCCGATCATTAACCCTCCTCAGTCTGCTATACTCGGTATGCA 1323
||||||||| ||||||||||| ||||| |||||||||||||||||||| || || |||||
Sbjct 1359 TGGAAGTCTTATAAGCACTCCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCA 1418
Query 1324 CTCGATTGTGTCA-CGTCCAATGGTTGTAGGAGGAAGCGTAGTGCCAAGACCAATGATGT 1382
|| |||||| || |||||||||||||| |||||||||||||| || || ||||||||||
Sbjct 1419 TTCAATTGTG-CAACGTCCAATGGTTGTGGGAGGAAGCGTAGTTCCGAGGCCAATGATGT 1477
Query 1383 ACGTCGCACTTACGTATGATCACAGGCTGATTGATGGTAGAGAGGCTGTCTACTTCCTGC 1442
| ||||| || || || ||||| ||||| |||||||| ||||||||||| || ||| |||
Sbjct 1478 ATGTCGCGCTGACTTACGATCATAGGCTAATTGATGGAAGAGAGGCTGTGTATTTCTTGC 1537
Query 1443 GCCGTGTCAAGGATGTTGTGGAGGATCCACAAAGGCTTCTTCTTGACATAT 1493
||||| | |||||||||||||| ||||| || ||||||||||| |||||||
Sbjct 1538 GCCGTATTAAGGATGTTGTGGAAGATCCTCAGAGGCTTCTTCTCGACATAT 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86997544485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5