BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492111
Length=1973
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26900.1 | Symbols: AT-HF, HISN4 | HIS HF | chr4:13515478-13... 3241 0.0
> AT4G26900.1 | Symbols: AT-HF, HISN4 | HIS HF | chr4:13515478-13519855
FORWARD LENGTH=2062
Length=2062
Score = 3241 bits (1755), Expect = 0.0
Identities = 1905/1977 (96%), Gaps = 11/1977 (1%)
Strand=Plus/Plus
Query 1 AATTAGCAATCGAAGCAGTGAGTGAGTTTGATATCAATGGAGGCTACGGCGGCGCCATTC 60
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTAACAATCGAAGCAGTGACTGAGTTTGATATCAATGGAGGCTACGGCGGCGCCATTC 60
Query 61 TCTTCAATTGTCTCTTCCAGACAAAACcttc-cttcatcttcttcgattcgcgcttcttc 119
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 61 TCTTCAATTGTCTCTTCCAGACAAAA-CTTCTCTTCATCTTCTTCGATTCGCGCTTCTTC 119
Query 120 tccggcttctttattcctcttccAGAAGAACATTGCCAATGGTAATCGCAAATTCAAATC 179
|||||||||||||||||||| |||||||| |||| ||||| ||||||||||||||||||
Sbjct 120 TCCGGCTTCTTTATTCCTCTCCCAGAAGAGTATTGGCAATGTTAATCGCAAATTCAAATC 179
Query 180 CCCCAGAAGCCTCTCCGTCCGTGCATCTTCTACCTCCGATTCTGGTGTGACTTTGCTTGA 239
|||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct 180 TCCCAGAAGCCTCTCCGTCCGCGCATCTTCTACCTCAGATTCTGTTGTGACTTTGCTTGA 239
Query 240 CTACGGAGCTGGGAATGTTCGAAGCATTCGCAATGCTCTTCGTCATCTCGGGTTCAGCAT 299
|||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 240 CTACGGAGCTGGAAATGTTCGGAGCATCCGCAATGCTCTTCGTCATCTCGGCTTCAGCAT 299
Query 300 CAAAGACGTTCAAACGCCGGGTGACATTCTGAATGCTGATCGCCTCATCTTTCCCGGCGT 359
||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||
Sbjct 300 CAAAGACGTTCAAACGCCGGGAGACATTCTGAATGCTGATCGACTCATATTTCCAGGCGT 359
Query 360 TGGAGCTTTTGCACCCGCCATGGATGTACTTAACAAAACTGGGATGGCTGAAGCTTTGTG 419
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 TGGTGCTTTTGCACCCGCCATGGATGTACTTAACAGAACTGGGATGGCTGAAGCTTTGTG 419
Query 420 CACATATATTGAGAATGACCGTCCCTTTCTCGGCATATGTCTTGGGCTACAACTACTTTT 479
|| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 420 CAAATATATTGAGAATGACCGTCCATTTCTAGGCATATGTCTTGGTCTACAACTACTTTT 479
Query 480 CGAGTCTAGTGAGGAGAATGGACCAGTCAAAGGTCTTGGCGTGATACCGGGAATAGTTGG 539
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 CGATTCTAGTGAAGAGAATGGACCAGTCAAAGGTCTTGGTGTGATACCGGGAATAGTTGG 539
Query 540 ACGCTTTGATTCTTCAGCTGGTATAAGAGTACCCCACATTGGCTGGAATGCGTTGCAAGT 599
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 ACGCTTTGATGCTTCAGCTGGTATAAGAGTACCCCACATTGGCTGGAATGCTTTGCAAGT 599
Query 600 GGGGAAGGATTCTGAAATTTTGGATGATGTTGGAAATCGTCATGTATATTTTGTTCATTC 659
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 600 TGGGAAGGATTCTGAAATTTTGGATGATGTTGGAAACCGTCATGTCTATTTTGTTCATTC 659
Query 660 GTACCGGGCCATTCCATCAGATGAAAATAAGGACTGGATTTCGTCTACCTGCAATTATGG 719
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 GTACAGGGCCATTCCATCAGATGAAAATAAGGACTGGATTTCGTCTACCTGTAATTATGG 719
Query 720 TGAATCATTTATATCTTCCATAAGAAGGGGAAATGTGCATGCAGTCCAGTTTCATCCTGA 779
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 720 TGAATCATTTATATCTTCCATAAGAAGGGGAAATGTGCATGCAGTTCAATTCCATCCTGA 779
Query 780 GAAGAGCGGGGAGGTGGGGCTTTCTGTTTTGAGAAGGTTCTTGCATCCAAAGTTACCTAC 839
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
Sbjct 780 AAAGAGCGGGGAGGTGGGGCTTTCTGTTTTAAGAAGGTTCTTGCATCCAAAATTACCTGC 839
Query 840 AACACAGAAGCCAATGGAAGGGAAGGCCTCAAAACTTGCAAAGAGGGTGATTGCTTGTCT 899
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 AACACAGAAGCCAATGGAAGGAAAGGCCTCAAAACTTGCAAAGAGGGTGATTGCTTGTCT 899
Query 900 TGATGTGAGGACGAATGATAAAGGAGATCTCGTAGTTACTAAAGGGGATCAGTATGATGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGATGTGAGGACGAATGATAAAGGAGATCTCGTAGTTACTAAAGGGGATCAGTATGATGT 959
Query 960 GAGAGAGCAATCTAATGAAAACGAGGTTCGAAACCTTGGCAAACCTGTTGATTTGGCTGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAGAGAGCAATCTAATGAAAACGAGGTTCGAAACCTTGGCAAACCTGTTGATTTGGCTGG 1019
Query 1020 GCAGTATTACAAAGATGGTGCAGATGAGATTAGCTTTTTAAACATAACTGGATTCCGCGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCAGTATTACAAAGATGGTGCAGATGAGATTAGCTTTTTAAACATAACTGGATTCCGCGA 1079
Query 1080 TTTTCCTCTAGGGGATTTGCCGATGATTCAGGTGTTGAGGCACACATCAAAGAATGTCTT 1139
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 TTTTCCTCTAGGGGATTTGCCGATGATTCAGGTGTTGAGGCAGACATCAAAGAATGTCTT 1139
Query 1140 TGTACCACTGACTGTTGGAGGTGGTATTAGAGACTTTACAGATGCTAGCGGCAGGTACTA 1199
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 TGTACCACTAACTGTTGGAGGTGGTATTAGAGACTTTACAGATGCTAGTGGCAGGTACTA 1199
Query 1200 TTCTAGCTTGGAAGTTGCTGCTGAGTATTTCAGATCCGGTGCTGATAAGATCTCCATAGG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTCTAGCTTGGAAGTTGCTGCTGAGTATTTCAGATCCGGTGCTGATAAGATCTCCATAGG 1259
Query 1260 AAGTGACGCTGTTTAC-GCTGCAGAGGAGTTCATAAAATCACGGGTGAAGACAGGAAAGA 1318
|||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1260 AAGTGACGCTGTTT-CTGCTGCAGAGGAGTTCATAAAATCAGGGGTGAAGACAGGAAAGA 1318
Query 1319 GTAGTCTAGAACAGATATCCAGAGTTTATGGAAATCAGGCAGTGGTTGTAAGTATTGATC 1378
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GTAGTTTAGAACAGATATCCAGAGTTTATGGAAATCAGGCAGTGGTTGTAAGTATTGATC 1378
Query 1379 CTCGTAGAGTTTATGTGAACCATCCGGATGATGTGCCATACAAAGTCATCAGAGTAACTA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTCGTAGAGTTTATGTGAACCATCCGGATGATGTGCCATACAAAGTCATCAGAGTAACTA 1438
Query 1439 ATCCAGGCCCAAATGGAGAAGAATATGCCTGGTATCAGTGCACGGTCAGTGGAGGACGAG 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ATCCAGGCCCAAATGGAGAAGAATATGCCTGGTATCAGTGCACGGTCAGTGGAGGACGAG 1498
Query 1499 AAGGTCGGCCTATTGGAGCATTTGAGCTTGCGAAAGCGGTTGAAGAATTAGGTGCTGGTG 1558
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1499 AAGGTCGACCTATTGGAGCATTTGAGCTTGCGAAAGCGGTTGAAGAATTAGGTGCCGGTG 1558
Query 1559 AAATACTATTGAACTGCATAGACTGTGATGGTCAAGGGAAAGGATTTGACATAGACTTAG 1618
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1559 AAATACTATTGAACTGCATAGACTGTGATGGTCAAGGGAAAGGATTCGACATAGACTTAG 1618
Query 1619 TAAAGCTCATCTCAGATTCAGTAGGCATACCGGTGATCGCAAGCAGTGGAGCAGGTACTC 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TAAAGCTCATCTCAGATTCAGTAGGCATACCGGTGATCGCAAGCAGTGGAGCAGGTACTC 1678
Query 1679 CCAGGC-ACTTTTCCGAGGTGTTTGAGAAGACAAACGCATCTGCCGCGCTTGCTGCCGGC 1737
|| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CC-GACCACTTTTCCGAGGTGTTTGAGAAGACAAACGCATCTGCCGCGCTTGCTGCCGGC 1737
Query 1738 ATTTTCCACCGGAAAGAGGTACCAATCCAATCTGTGAAAGAACACTTACAAGAGGAGCGC 1797
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1738 ATTTTCCACCGGAAAGAGGTACCAATCCAATCTGTGAAAGAGCACTTACAAGAGGAGCGC 1797
Query 1798 ATAGAAGTCAGGATCTGAGAATTTTCTGGTCTGCGTGTTACCATGATTCATGTCACATTC 1857
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1798 ATAGAAGTCAGGATCTGAGAATTTTCTGGTCTGCGTGTTACCATAATTCATGACACATTC 1857
Query 1858 AACAAGAAGATAGAATCTTTACCTTCAATAAATTTTTAT-AAGTCGGAACCATCGGAGCT 1916
||||||| |||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1858 AACAAGA---TAGAATCTTTACCTTCAATAAATTAA-ATTAAGTCGGAACCATCGGAGCT 1913
Query 1917 CTAACAGATCTGAGTGAATCCTCTTTTAGTTGATTTCCTTTTGTTGACAGTAAGACT 1973
| || || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1914 CCAATAGGTCTGAGTGAATCCTCTTATAGTTGATTTCCTTTTGTTGACAGTAAGACT 1970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97740461115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5