BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492113
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26880.1 | Symbols: | Stigma-specific Stig1 family protein ... 399 8e-111
AT5G55110.1 | Symbols: | Stigma-specific Stig1 family protein ... 169 2e-41
> AT4G26880.1 | Symbols: | Stigma-specific Stig1 family protein
| chr4:13508265-13508723 REVERSE LENGTH=459
Length=459
Score = 399 bits (216), Expect = 8e-111
Identities = 240/252 (95%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 169 AACCCTGAGATATGTACCCTATACGGAGGGGGAGGAAGCAACTCGACGATGACATGCTGC 228
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 208 AACCCTGAGATATGTACCCCCTACGGAGGGGGAGGAAGCAACTCGACGATGACATGCTGC 267
Query 229 AACAACAAGTGCATAGACGTGGCCAGTGACAACGATAACTGTGGCGCGTGTAAGAACAAA 288
||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 268 AACAATAAGTGCATAGACGTGTCCAGTGACGACAATAACTGTGGCGCGTGTAAGAACAAA 327
Query 289 TGCAAGTTCTCACAGACGTGTTGTCGCGGCCAATGTGTTTACGTGGCTTACGACAAACGC 348
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 328 TGCAAGTTCTCACAGACGTGTTGTCGCGGCCAATGTGTTTACGTAGCTTACGATAAACGC 387
Query 349 CATTGTGGACAGTGTAACCATCCGTGTGAGCTCGGCGAGTTATGCGTCTACGGTCTCTGT 408
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 388 CATTGTGGACAGTGTAACCATCCGTGTGAGCTGGGCGAGTTCTGCGTCTACGGTCTATGT 447
Query 409 AACTACGCGTGA 420
||||| ||||||
Sbjct 448 AACTATGCGTGA 459
Score = 246 bits (133), Expect = 1e-64
Identities = 157/168 (93%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 1 ATGGCCCTCATGAAGCTACTCGTGTCCATCGCAATAACAACCGCAATCACAATCGCAGTC 60
|||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCTTCGTGAAGCTACTCGTGTCCATTGCAATAACAACCGCAATCACAATCGCAGTC 60
Query 61 ATCACAACCAGAACCAACATTACAACCACCACCATTAGAGAGTACACAAGCTTTGATGCA 120
|||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 61 ATCACAACCATAACCAACAATAC-A--ACCACCATTAGAGAGTACACAAGCTTTGATGCA 117
Query 121 CCGAGTGCGCCGACTATAAGGCCGAACCGGTTCCTGGCTCAAAAGGAA 168
|||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 118 CCGAGTACGCCGACTATAAGGCCGAACCGGTTATTGGCTCAAAAGGAA 165
> AT5G55110.1 | Symbols: | Stigma-specific Stig1 family protein
| chr5:22367870-22368361 FORWARD LENGTH=492
Length=492
Score = 169 bits (91), Expect = 2e-41
Identities = 179/222 (81%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 201 AGGAAGC-AACTCGACGATGACATGCTGCAACAACAAGTGCATAGACGTGGCCAGTGACA 259
||| ||| ||| | || ||| | || |||||||||||||| || || | | | |||
Sbjct 273 AGG-AGCAAACGCTACAATGGCTTGTTGCAACAACAAGTGTATGGATTTATCAACCGACG 331
Query 260 ACGATAACTGTGGCGCGTGTAAGAACAAATGCAAGTTCTCACAGACGTGTTGTCGCGGCC 319
|| | ||||| || ||||||||||||||||||||| || ||||||||||| || |
Sbjct 332 ACAAAAACTGCGGTTTATGTAAGAACAAATGCAAGTTCGGGCAAACGTGTTGTCGTGGTC 391
Query 320 AATGTGTTTACGTGGCTTACGACAAACGCCATTGTGGACAGTGTAACCATCCG-TGTGAG 378
| || ||||||||||| ||||| ||||||||||| || ||||||||||| || || ||
Sbjct 392 AGTGCGTTTACGTGGCCTACGATAAACGCCATTGCGGTGAGTGTAACCAT-CGTTGCGAT 450
Query 379 CTCGGCGAGTTATGCGTCTACGGTCTCTGTAACTACGCGTGA 420
||||||||||| ||||||||||||||||||||||||||||||
Sbjct 451 CTCGGCGAGTTCTGCGTCTACGGTCTCTGTAACTACGCGTGA 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19906028604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5