BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492116
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | small ubi... 961 0.0
> AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | small ubiquitin-like
modifier 1 | chr4:13497326-13498730 FORWARD LENGTH=715
Length=715
Score = 961 bits (520), Expect = 0.0
Identities = 654/714 (92%), Gaps = 27/714 (4%)
Strand=Plus/Plus
Query 1 ACAAAAGCCACGGCCAATAAATTAGAGATTTTCAGAGTCAGTCTTTTTGTATTCATCTCT 60
|||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 1 ACAAAAGCCACGGCCAAT-TA-GAGAGATTTTCAGAGTCAGTCTTTTTATATTCATCTCT 58
Query 61 CAGCATCATTCTTTGATTGTGTGAATCTTTCATCGTTATCTCAAATTTCGTATTTTTATC 120
|||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
Sbjct 59 CAGCATCATTCTTTGATTGTGTGAATCTCTCATCGTTCTCTCAAATTTCGTGTTTTTGTA 118
Query 121 ACCGGACGGAGAATCTTTCACGATGTCTGCAAACCAGGAAGAAGACAAGAAGCCAGGCGA 180
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 119 ACCGGACGGAGAACCTTTCACGATGTCTGCAAACCAGGAGGAAGACAAGAAGCCAGGAGA 178
Query 181 CGGAGGAGCTCACATCAACCTGAAAGTCAAGGGACAGGATGGAAACGAGGTGTTCTTTAG 240
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 179 CGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGGATGGAAACGAGGTTTTCTTTAG 238
Query 241 GATCAAGAGAAGCACCCAGCTCAAGAAGCTCATGAATGCTTACTGTGACCGGCAATCTGT 300
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 239 GATCAAGAGAAGCACTCAGCTCAAGAAGCTGATGAATGCTTACTGTGACCGGCAATCTGT 298
Query 301 GGACATGAACTCCATTGCTTTCTTGTTTGATGGCCGTCGTCTGCGTGCTGAGCAAACTCC 360
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 299 GGACATGAACTCCATTGCTTTCTTGTTTGATGGGCGTCGTCTTCGTGCTGAGCAAACTCC 358
Query 361 TGATGAGCTTGACATGGAGGACGGTGATGAGATCGATGCGATGCTCCATCAGACTGGTGG 420
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 CGATGAGCTTGACATGGAGGATGGTGATGAGATCGATGCGATGCTCCATCAGACTGGTGG 418
Query 421 CAGAGGTGGTGGTGCTATGGCCTGACACTTCCTCCGGGTTTAGGGCTTGTGTG--ATATG 478
||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 419 CAGCGGTGGTGGTGCTACGGCCTGACACTTCGTCCAGGTTTAGGGCTTGTGTGTGATATG 478
Query 479 AATGGTTAAGGAGTATTCGGCATTAGGAATTGCAGACTTGTTTTT--ATCGTGACCATTC 536
||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||
Sbjct 479 AATGGTTAAGGAGTAATCGGCATTAGGATTTGCAGACTTGTTTTTTTATCGTGACCATTC 538
Query 537 TCTCTAGAAACTA------------CA--A-G-TTC--G--CCCTTTGGTTGATTTTTTG 576
||| ||||||||| || | | || | |||||||||||||||||||
Sbjct 539 TCTTTAGAAACTAAGTTATTATGGTCACGAAGGTTAAAGAACCCTTTGGTTGATTTTTTG 598
Query 577 TCTTGTTCGTTTGGTATTGGATCCTATGATATTACTATTTCGGCTTAAAGGTGTTATTAA 636
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 TCTTGTTCGTTTGGTATCGGATCCTATGATACTACTATTTCGGCTTAAAGGTGTTATTAA 658
Query 637 CCCGATTATCTAAAGTTTGTTGGTATGGTAACGATGAAAAAGCTATAAATTATT 690
||| ||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 659 CCCAATTATCTAAAGTTTGTTGGTATGGTAACGGT-AAAAAGCTATTAATTATT 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5