BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492123
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26790.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1949 0.0
AT4G26795.1 | Symbols: | other RNA | chr4:13487392-13489565 RE... 606 2e-172
> AT4G26790.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr4:13487457-13489371 FORWARD LENGTH=1680
Length=1680
Score = 1949 bits (1055), Expect = 0.0
Identities = 1218/1295 (94%), Gaps = 17/1295 (1%)
Strand=Plus/Plus
Query 333 aaaaaGCATGCAGCGAAACAGAGTTCTTGCGTTCTTGTTGCTAGCAGCTCAGCTTTTGGT 392
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 396 AAAAAGCATGCAGCGAAACAGAGTTCTTGCGTTCTTGTTGCTAGCAGCTCAGCTCTTGGT 455
Query 393 GCAA-ATACCTGAATCGTGTGCAAAAGTTCCTGCACTTATCGTATTTGGGGACTCAACTG 451
| || ||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 456 G-AAGATACCTGAAACGTGTGCAAAATTTCCCGCACTTATCGTATTTGGTGACTCAACTG 514
Query 452 TAGATTCAGGCAACAACAACCAGATTTCTACTGTTCTGAAGAGTAACTTT-CAGCCTTAT 510
| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||
Sbjct 515 TTGATTCAGGCAACAACAACCAGATTTCTACTGTTCTGAAGAGCAA-TTTCCAGCCATAT 573
Query 511 GGCCGGGATTACTTTGACGGCAAAGCGACTGGGAGATTCTCAAATGGTCGGATTGCACCA 570
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 574 GGCCGGGATTACTTTGACGGCAAAGCGACTGGGAGATTTTCAAATGGCCGGATTGCACCA 633
Query 571 GACTTCATCTCTGAAGGTTTGGGACTCAAGAACGCAGTCCCTGCCTATCTAGATCCAGCA 630
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 634 GACTTCATTTCTGAAGGTTTGGGACTCAAGAACGCAGTCCCTGCCTACCTAGATCCAGCA 693
Query 631 TACAACATTGCAGACTTTGCCACTGGTGTCTGTTTCGCTTCAGCTGGAACCGGCTTAGAC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TACAACATTGCAGACTTTGCCACTGGTGTCTGTTTCGCTTCAGCTGGAACCGGCTTAGAC 753
Query 691 AATGCAACCTCTGCTGTGTTATCTGTGATGCCGCTTTGGAAGGAAGTGGAGTACTACAAA 750
|||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 754 AATGCAACCTCTGCCGTGTTATCTGTAATGCCGCTATGGAAGGAAGTGGAATACTACAAA 813
Query 751 GAATACCAGACCAGGCTAAGAAGCTACTTGGGTGAAGAGAAAGCTAATGAGATTATTAGT 810
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GAATACCAAACCAGGCTAAGAAGCTACTTGGGTGAAGAGAAAGCTAATGAGATTATTAGT 873
Query 811 GAAGCACTTTACCTGATTAGTATCGGAACCAACGATTTCCTGGAGAATTACTATCTTCTT 870
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GAATCACTTTACCTGATTAGTATCGGAACCAACGATTTCCTGGAGAATTACTATCTTCTT 933
Query 871 CCTCGTAAGTTACGGAAGTACGCTGTGAACGAGTACCAAAATTTCCTGATAGGAATCGCA 930
|| || ||||||||||||||| | ||||||||||||||| |||||||||||||||| |||
Sbjct 934 CCCCGCAAGTTACGGAAGTACTCAGTGAACGAGTACCAATATTTCCTGATAGGAATAGCA 993
Query 931 GCAGGTTTCGTGACAGATATTTACAGACTCGGAGCTCGGAAGATGTCTTGGTCGGGACTC 990
|||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 994 GCAGATTTCGTGACAGATATATACAGACTCGGAGCTCGGAAGATGTCTTTGTCGGGACTC 1053
Query 991 TCTCCTTTTGGATGCTTGCCCCTGGAAAGAACAACTCAGCTCTTTTATGGAAGCAAATGT 1050
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TCTCCTTTTGGATGCTTACCCCTGGAAAGAACAACTCAGCTCTTTTATGGAAGCAAATGT 1113
Query 1051 ATCGAAGAATACAACATTGTGGCTAGAGATTTCAACACCAAAATGGAA-ATGAAAGTCTA 1109
|| |||||||||||||||||||||||||||||||||| ||| |||||| | ||||||||
Sbjct 1114 ATTGAAGAATACAACATTGTGGCTAGAGATTTCAACATCAAGATGGAAGA-GAAAGTCTT 1172
Query 1110 CCAGTTGAACAGAGAACTGGACGGAATCCAGCTTGTGTTTTCAAATCCGTATGACCTGGT 1169
||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1173 CCAGTTGAACAGAGATCTGAACGGAATCCAGCTGGTGTTTTCAAATCCATATGACCTTGT 1232
Query 1170 TTCAGAAATCATATACCATCCTGAAGCATTCGGTTTCCAAAATGTAAGGAGTGCATGTTG 1229
||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||
Sbjct 1233 TTCAGAAATCATATACCATCCTGAAGCATTCGGTTTCGAAAACGTAAGAAGTGCGTGTTG 1292
Query 1230 CGGAACGGGATACTATGAGATGAGCTACTTGTGTGATAAAATGAACCCATTCACATGTTC 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 CGGAACGGGATACTATGAGATGAGCTACTTGTGTGATAAAATGAACCCATTCACATGTTC 1352
Query 1290 TGATGCAAGCAAATATGTATTTTGGGATTCATTTCACCCAACAGAGAAGACAAACGCCAT 1349
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1353 GGATGCAAGCAAATATGTATTTTGGGACTCATTTCACCCAACAGAGAAGACAAACGCCAT 1412
Query 1350 CGTAGCAAGTCATGTTCTGAAATACGACTTATCTCGGTTTCAGTGATAAA-TAAGAAAAG 1408
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1413 CGTAGCAAATCATGTTCTGAAATACGACTTATCTCGGTTTCAGTGATAAAATAAGAAAT- 1471
Query 1409 TGCCACACCACAAGCACAATAGTTATTAGTTAACCTACTACATTCTTTCCTCCACAACat 1468
||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1472 TGCTACACCACAAGCACTATAGTTATTAGTTAACCTACTAAATTCTTTCCTCCACAACAT 1531
Query 1469 atatatatatattttttttttCTGTAAGTTTCTTGTTTAGATTTCACTCAAATTAAGCTT 1528
|||||| | | |||| |||| |||||||||| ||||| |||||||||| ||||||
Sbjct 1532 ATATAT-T-T-TTTT------CTGTGAGTTTCTTGTCTAGATATCACTCAAATCAAGCTT 1582
Query 1529 CCAGAATGTTGTAAAAGAACCACTCTTCTTACTCTGTGTTCTTGTAACTACATAAAGATG 1588
||| ||||||||| |||||||| |||||||||||| ||||| ||| ||||||||||||||
Sbjct 1583 CCAAAATGTTGTACAAGAACCATTCTTCTTACTCTATGTTCGTGTGACTACATAAAGATG 1642
Query 1589 CTACTGTGATGTTATAAAGATGGAAAAGATCAAAC 1623
|||||||||||||||||| ||||| ||||||||||
Sbjct 1643 CTACTGTGATGTTATAAAAATGGACAAGATCAAAC 1677
Score = 453 bits (245), Expect = 2e-126
Identities = 284/302 (94%), Gaps = 5/302 (2%)
Strand=Plus/Plus
Query 1 AAAAAGGAAGATGCGTTACATAT--ATCTGAAGGTTGCAATAGTACGAATCCTTCTACTT 58
||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||
Sbjct 1 AAAAAGGAAGATGCGTTACATATACATCTGAAGCTTGCAATGGTACGAATCCTTCTATTT 60
Query 59 TAAATTATTCTGTCTTGTCTCTCCTTTTTAGTAGCTATAAATACGGCTCTCTGCTGCAAA 118
|||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 61 TAAAATATTCTGTCTT-TCTCTCTTTTTTAGTAGCTATAAATACGGCTCTCTGCTGCACA 119
Query 119 ACTATTATTGAAACTCTCAATCATATTCAGCTCATTACTCACCTCAACTAACTCTCTGTG 178
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 ACTATTATTGAAACTCTCAATCATTTTCAGCTCATTACTCACCTCAACTAACTCTCTGTG 179
Query 179 GCCAAAAGTAAACAGAGACAAATCTGACTAAGGAGTATTTAATAAGCTTCATCTAACAA- 237
||||||| |||||||||||| ||| |||||||||||||||||||||| |||||||||||
Sbjct 180 GCCAAAAATAAACAGAGACATATCAGACTAAGGAGTATTTAATAAGCATCATCTAACAAC 239
Query 238 AGGGCCAAGCTATTAACTACACGAGCGAAATCTGTTTTAGTCAGGTTTGATAGAAGATAC 297
||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 AGG-CCAAGGTATTAACTACACGAGCTAAATCTGTTTTAGTCAGGTTTGATAGAAGATAC 298
Query 298 CT 299
||
Sbjct 299 CT 300
> AT4G26795.1 | Symbols: | other RNA | chr4:13487392-13489565
REVERSE LENGTH=1368
Length=1368
Score = 606 bits (328), Expect = 2e-172
Identities = 364/381 (96%), Gaps = 4/381 (1%)
Strand=Plus/Minus
Query 333 aaaaaGCATGCAGCGAAACAGAGTTCTTGCGTTCTTGTTGCTAGCAGCTCAGCTTTTGGT 392
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1032 AAAAAGCATGCAGCGAAACAGAGTTCTTGCGTTCTTGTTGCTAGCAGCTCAGCTCTTGGT 973
Query 393 GCAA-ATACCTGAATCGTGTGCAAAAGTTCCTGCACTTATCGTATTTGGGGACTCAACTG 451
| || ||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 972 G-AAGATACCTGAAACGTGTGCAAAATTTCCCGCACTTATCGTATTTGGTGACTCAACTG 914
Query 452 TAGATTCAGGCAACAACAACCAGATTTCTACTGTTCTGAAGAGTAACTTT-CAGCCTTAT 510
| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||
Sbjct 913 TTGATTCAGGCAACAACAACCAGATTTCTACTGTTCTGAAGAGCAA-TTTCCAGCCATAT 855
Query 511 GGCCGGGATTACTTTGACGGCAAAGCGACTGGGAGATTCTCAAATGGTCGGATTGCACCA 570
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 854 GGCCGGGATTACTTTGACGGCAAAGCGACTGGGAGATTTTCAAATGGCCGGATTGCACCA 795
Query 571 GACTTCATCTCTGAAGGTTTGGGACTCAAGAACGCAGTCCCTGCCTATCTAGATCCAGCA 630
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 794 GACTTCATTTCTGAAGGTTTGGGACTCAAGAACGCAGTCCCTGCCTACCTAGATCCAGCA 735
Query 631 TACAACATTGCAGACTTTGCCACTGGTGTCTGTTTCGCTTCAGCTGGAACCGGCTTAGAC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TACAACATTGCAGACTTTGCCACTGGTGTCTGTTTCGCTTCAGCTGGAACCGGCTTAGAC 675
Query 691 AATGCAACCTCTGCTGTGTTA 711
|||||||||||||| ||||||
Sbjct 674 AATGCAACCTCTGCCGTGTTA 654
Score = 590 bits (319), Expect = 2e-167
Identities = 362/383 (95%), Gaps = 2/383 (1%)
Strand=Plus/Minus
Query 823 CTGATTAGTATCGGAACCAACGATTTCCTGGAGAATTACTATCTTCTTCCTCGTAAGTTA 882
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 519 CTGATTAGTATCGGAACCAACGATTTCCTGGAGAATTACTATCTTCTTCCCCGCAAGTTA 460
Query 883 CGGAAGTACGCTGTGAACGAGTACCAAAATTTCCTGATAGGAATCGCAGCAGGTTTCGTG 942
||||||||| | ||||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 459 CGGAAGTACTCAGTGAACGAGTACCAATATTTCCTGATAGGAATAGCAGCAGATTTCGTG 400
Query 943 ACAGATATTTACAGACTCGGAGCTCGGAAGATGTCTTGGTCGGGACTCTCTCCTTTTGGA 1002
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 399 ACAGATATATACAGACTCGGAGCTCGGAAGATGTCTTTGTCGGGACTCTCTCCTTTTGGA 340
Query 1003 TGCTTGCCCCTGGAAAGAACAACTCAGCTCTTTTATGGAAGCAAATGTATCGAAGAATAC 1062
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 339 TGCTTACCCCTGGAAAGAACAACTCAGCTCTTTTATGGAAGCAAATGTATTGAAGAATAC 280
Query 1063 AACATTGTGGCTAGAGATTTCAACACCAAAATGGAA-ATGAAAGTCTACCAGTTGAACAG 1121
||||||||||||||||||||||||| ||| |||||| | |||||||| ||||||||||||
Sbjct 279 AACATTGTGGCTAGAGATTTCAACATCAAGATGGAAGA-GAAAGTCTTCCAGTTGAACAG 221
Query 1122 AGAACTGGACGGAATCCAGCTTGTGTTTTCAAATCCGTATGACCTGGTTTCAGAAATCAT 1181
||| ||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 220 AGATCTGAACGGAATCCAGCTGGTGTTTTCAAATCCATATGACCTTGTTTCAGAAATCAT 161
Query 1182 ATACCATCCTGAAGCATTCGGTT 1204
|||||||||||||||||||||||
Sbjct 160 ATACCATCCTGAAGCATTCGGTT 138
Score = 268 bits (145), Expect = 9e-71
Identities = 167/177 (94%), Gaps = 3/177 (2%)
Strand=Plus/Minus
Query 1 AAAAAGGAAGATGCGTTACATAT--ATCTGAAGGTTGCAATAGTACGAATCCTTCTACTT 58
||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||
Sbjct 1303 AAAAAGGAAGATGCGTTACATATACATCTGAAGCTTGCAATGGTACGAATCCTTCTATTT 1244
Query 59 TAAATTATTCTGTCTTGTCTCTCCTTTTTAGTAGCTATAAATACGGCTCTCTGCTGCAAA 118
|||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1243 TAAAATATTCTGTCTT-TCTCTCTTTTTTAGTAGCTATAAATACGGCTCTCTGCTGCACA 1185
Query 119 ACTATTATTGAAACTCTCAATCATATTCAGCTCATTACTCACCTCAACTAACTCTCT 175
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1184 ACTATTATTGAAACTCTCAATCATTTTCAGCTCATTACTCACCTCAACTAACTCTCT 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5