BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492124
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26780.1 | Symbols: AR192 | Co-chaperone GrpE family protein... 1801 0.0
AT5G55200.1 | Symbols: | Co-chaperone GrpE family protein | ch... 442 4e-123
> AT4G26780.1 | Symbols: AR192 | Co-chaperone GrpE family protein
| chr4:13484839-13486771 REVERSE LENGTH=1422
Length=1422
Score = 1801 bits (975), Expect = 0.0
Identities = 1140/1217 (94%), Gaps = 21/1217 (2%)
Strand=Plus/Plus
Query 1 ATGTTGGTTTCGAGAATTTTATCGCGAGTAACCCGTAACGCGGGCTTACGCTCCTATCTC 60
|||||||||| ||||||||| |||||||||||||| ||||||||| ||||||| | |||
Sbjct 212 ATGTTGGTTTTGAGAATTTTGTCGCGAGTAACCCGCAACGCGGGCATACGCTCATCTCTA 271
Query 61 TCCGCCGTCACTCTTCCGGCGAGTAATCAGACTCCTGTTTTCTCGAGCCGCTTTCACTCC 120
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 272 TCCGCCGTCACTCTTCCGGCGAGGAATCAGACTCCTGTTTTCTCGAGCCGGTTTCACTCC 331
Query 121 CGCGATCACGAATTT-TCGCATAAGCTTGTTCCAGCTCAGGTGTC--T-ATGGATTCGGT 176
| | ||||| |||| |||||||||||||||||||||||| |||| | ||||||||| |
Sbjct 332 CTAGCTCACG-ATTTCTCGCATAAGCTTGTTCCAGCTCAGATGTCTATGATGGATTCGTT 390
Query 177 TGCACTGCAAAGGTTCTCCTTTTCTTCGACTACCTCGCCTGAATCAGATGAGAAGAAGAG 236
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 391 TGCACTGCAAAGGTTCAATTTTTCTTCCTCTACCTCGCCTGAATCAGATGAGAAGAAGAC 450
Query 237 CAACACTGAGGCCTCAAGGACAAGTGAAGAGAAACCTACAGCTGAGGCAAACCAACCAGG 296
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CCACACTGAGGCCTCAAAGACAAGTGAAGAGAAACCTACAGCTGAGGCAAACCAACCAGG 510
Query 297 TCTTGACACTGAATCTAAAGATTCTGGGACCGATTCTGCGAAAAGAAAGTGGAAAGGTGC 356
||||||| |||||||||||||||||| ||| |||||||| ||||||||| ||||||||||
Sbjct 511 TCTTGACTCTGAATCTAAAGATTCTGTGACAGATTCTGCAAAAAGAAAGCGGAAAGGTGC 570
Query 357 TAAAGGAGCTG------CATCTTCTGAATCAGATTCTGAGAGTGATGATGATGAGTTGTC 410
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 571 TAAAGGAGCTGCATCTTCATCTTCTGAATCAGATTCTGAGAGTGATGATGATGAATTGTC 630
Query 411 AAAGGATGATTTGGTGAAGCTCGTAGCTGAAAAGGAAGAGCTACTGTCTGAAAAGGAAGA 470
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 631 AGCCGATGATTTGGTGAAGCTCGTAGCTGAGAAGGAAGAGCTACTGTCTGAGAAGGAAGA 690
Query 471 AGAGATTAAGAAAATGAAAGATAAAGTTCTTCGCACTTATGCTGAGATGGAGAATGTCAT 530
|||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 691 AGAGATTAAGCAGTTGAAAGACAAAGTTCTTCGCACTTATGCTGAGATGGAGAATGTCAT 750
Query 531 GGACAGAACAAGACGTGAAGCTGAAAACACCAAAAAGTATGCCGTACAGAATTTTGCAAA 590
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 751 GGACAGAACAAGACGTGATGCTGAAAACACCAAAAAGTATGCCGTACAGAATTTTGCAAA 810
Query 591 GAGCCT-TCTGGATGTGGCGGATAATCTTGGAAGAGCTTCTTCGGTTGTCAAAGAAAGCT 649
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GAGCCTAT-TGGATGTGGCGGATAATCTTGGAAGAGCTTCTTCGGTTGTCAAAGAAAGCT 869
Query 650 TCTCAAAGCTTGACACCTCGGAAGATTCGGCTGGAGCAGCTCCACTATTGAAGACCCTTT 709
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 870 TCTCAAAGCTTGACACCTCAGAAGATTCTGCTGGAGCAGCTCCACTATTAAAGACCCTTT 929
Query 710 TAGAAGGAGTGGAGATGACTGAGAAACAGCTAGCTGAGGTATTTAAGAAATTTGGTATGG 769
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 930 TAGAAGGAGTGGAGATGACTGAGAAACAGCTTGCTGAGGTATTTAAGAAATTTGGTATGG 989
Query 770 AGAAGTATGATCCTACAAACGAGCCGTTTGATCCAAACAGACATAACGCAATGTTCCAAG 829
||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 990 AGAAGTATGATCCTATAAACGAGCCATTTGATCCAAACAGACATAACGCAGTGTTCCAAG 1049
Query 830 TCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAGTATGGATACACGC 889
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1050 TCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGAAGTCTGGATACACGC 1109
Query 890 TGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTACCCAGGGAGGAGAGAACCAAG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTACCCAGGGAGGAGAGAACCAAG 1169
Query 950 AAGAAAAGAAAGAGTCTGATGCTTAAGAAGAAGTCAGCTGGTTTCCATAAATTTTGTTAC 1009
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1170 AAGAAAAGAAAGAGTCTGATGCTTAAGAAGAAGTCAGCTGGTTTTCATAAATTTTGTTAC 1229
Query 1010 GGTTCTATGTTTCGAGTTACTCATTAACATCTTCTCAAGTCTTTGAGTCATAGTTTTCTC 1069
||||||||||||| | |||||||||||||| |||||| |||||||||||||||
Sbjct 1230 GGTTCTATGTTTC------C--ATTAACATCTTCTCGAGTCTTCGAGTCATAGTTTTCTT 1281
Query 1070 TTGTGGTTTGGTTATTCATTAGATGAACAAGATCTCCCATAAGTTCCTGGATGCGGCATT 1129
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1282 TTGTGGTTTGGTTATTCATTAGATGAACAAGATCTCCCATAAGTTGCTGGACATGGCATT 1341
Query 1130 TGCAGGGGAAATCCTGCTTCTGTGTCTGTTTTCTCTATCTCCATGCTTTAATTGCACGAG 1189
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1342 TGCAGGGGAAATCCTGCTTCTGTGTCTGTTTTCTCTATCTCCATGCTATAATTGAACGAG 1401
Query 1190 GAAAATATCATTTTACA 1206
|||||||||||||||||
Sbjct 1402 GAAAATATCATTTTACA 1418
> AT5G55200.1 | Symbols: | Co-chaperone GrpE family protein |
chr5:22394607-22396572 FORWARD LENGTH=1244
Length=1244
Score = 442 bits (239), Expect = 4e-123
Identities = 440/535 (82%), Gaps = 22/535 (4%)
Strand=Plus/Plus
Query 406 TTGTCAAAG-GATGATTTGGTGAAGCTCGT-AGCTGAAAAGGAAGAGCTACTGTCTGAAA 463
||||| ||| || ||||| |||||||| || || ||| |||||||| || || |
Sbjct 438 TTGTC-AAGAGACGATTTAGTGAAGCTTGTGAG-TGAGAAGGAAGATCTTTTGAAGGTTC 495
Query 464 AGGAAG-AAGAGATTAA-GAAAATGAAAGATAAAGTTCTTCGCACTTATGCTGAG-ATGG 520
| | || |||| | ||| | |||||||||||||| |||||||||||||||||||| | |
Sbjct 496 A-GCAGAAAGACA-TAATGGAAATGAAAGATAAATTTCTTCGCACTTATGCTGAGCA-GC 552
Query 521 AGAATGTCATGGACAGAAC-AAGACGTGAA-GCTGAAAACACCAAAAAGTAT-GCCGTAC 577
||||| | |||||||| || || ||| || ||||||| | ||||||||| | || ||||
Sbjct 553 AGAATCTTATGGACAGGACTAA-CCGT-AATGCTGAAAGCGCCAAAAAGT-TCGCTGTAC 609
Query 578 AGAATTTTGCAAAGAGCCTTCTGGATGTGGCGGATAATCTTGGAAGAGCTTCTTCGGTTG 637
|||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct 610 AGAACTTTGCAACGAGCCTTTTGGATGTGGCGGATAATCTTGAAAGAGCTTCTTCTGTTG 669
Query 638 TCAAAGAAAGCTTCTCAAAGCTTGACACCTCGGAAGATTCGGCTGGAGC-AGCTCCACTA 696
||||||| || || || ||| | ||||| || |||||| |||||| || | |||||||
Sbjct 670 TCAAAGAGAGTTTTTCGAAGATCGACACTTCAAAAGATTTGGCTGGTGCTA-CTCCACTG 728
Query 697 TTGAAGACCCTTTTAGAAGGAGTGGAGATGACTGAGAAACAGCTAGCTGAGGTATTTAAG 756
|| || | ||| ||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct 729 TTAAAAAACCTATTAGAAGGAGTGGAGATGACTGAGAAACAATTAGCTGAGGTGTTTA-G 787
Query 757 AAATT-TGGTATGGAGAA-GTATGATCCTACAAACGAGCCGTTTGATCCAAACAGACATA 814
||| |||| ||| ||| | | |||||| ||| || |||||| |||||||||||||||
Sbjct 788 AAAAGCTGGTTTGGTGAAAGAA-GATCCTTTAAATGAACCGTTTAATCCAAACAGACATA 846
Query 815 ACGCAATGTTCCAAGTCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGA 874
||||| ||||||||||||| |||||||| |||||| |||||||| ||||||||||| | |
Sbjct 847 ACGCAGTGTTCCAAGTCCCAGATGCTTCCAAGCCAAAAGGCACAATTGCTCATGTCCTAA 906
Query 875 AGTATGGATACACGCTGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTAC 929
||| ||||||| | |||| || ||||||||||| ||||||||||||||||||||
Sbjct 907 AGTCTGGATACTCATTGTACGATCGAGTTATAAGGCCAGCTGAGGTTGGTGTTAC 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5