BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492125
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26770.1 | Symbols: | Phosphatidate cytidylyltransferase fa... 2706 0.0
> AT4G26770.1 | Symbols: | Phosphatidate cytidylyltransferase
family protein | chr4:13482074-13484849 FORWARD LENGTH=1741
Length=1741
Score = 2706 bits (1465), Expect = 0.0
Identities = 1634/1714 (95%), Gaps = 18/1714 (1%)
Strand=Plus/Plus
Query 1 ATGAAACCTCACCGCTAAGTGCTCATCCACCACCTTCCTCCTCCTCCTTCTTACCTCACC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGAAACCTCACCGCTAAGTGCTCATCCACCACCTTCCTCCTCCTCCTTCTTCCCTCACC 60
Query 61 TTTTGAG------T-TT--C-TTTC---TC--TAATTAGGGTTTCGCATTTTCAATCACT 105
||||||| | || | |||| || |||||||||||||||||||||||||||
Sbjct 61 TTTTGAGTTTCTTTCTTCACGTTTCTTTTCATTAATTAGGGTTTCGCATTTTCAATCACC 120
Query 106 ATCATCCCGCCACATATTCGTTAATGAACTGAGAGCATTTCTTAGGGATCTCGATGGCAA 165
|||||||| |||| | ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 121 ATCATCCCACCACGTTTTCGTTAATGAACTGAGAGCATTTCCTAGGGATCTCAATGGCAA 180
Query 166 TGGAGAAAGATCTCAATCCGAATTCTCCACGGATTAGAAAGCTAAGGGATAATAGTTATC 225
||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
Sbjct 181 TGGAGAAAGATCTCAGTCCAAATTCTCCACGGATTAGAAAGCTAAGGGATACTAGTTACC 240
Query 226 CTACTACACCAACGTCTCGAATGAGTAGTAATAACCAAAGAGATAACCATTATCCCAACA 285
|||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 241 CTACTACACCAACGTCTCGAATGAATACTAATAACCAGAGAGATAACCATTATCCCAACA 300
Query 286 TTCCTAATTCACCAAGGGATTACAATTATACTCCTAGCTCTCCAACAGCCCGCATTCGAC 345
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 TTCCTAATTCACCAAGGGATTACAATTATACTCCTAGCTCTCCAACAGCTCGCATTCGAC 360
Query 346 ACCGCAGGCGATCAAGCGAGAATTTAGCTGAGGTGAACAGAAGCAATGTAAGCAGAGTAA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCGCAGGCGATCAAGCGAGAATTTAGCTGAGGTGAACAGAAGCAATGTAAGCAGAGTAA 420
Query 406 GCAATTTGTTGCTTGGTGATAAGAACAAGTACAGATCCATGTGGATAAGGACATGCTCAT 465
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 GCAATTTGTTACTTGGTGATAAGAACAAGTACAGATCAATGTGGATAAGGACATGCTCAT 480
Query 466 CTCTGTGGATGCTCGGTGGAGTTGTCTTTATAATCTACATGGGTCATCTCTACATTTGGG 525
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 CTCTCTGGATGCTCGGTGGAGTTGTGTTTATAATCTACATGGGTCATCTCTACATTTGGG 540
Query 526 CTATGGTTGTGGTTATACAGATATTCATGGCTAAAGAGCTCTTCTTTCTTCGTAGAAGAG 585
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 541 CTATGGTTGTGGTTATACAGATATTCATGGCCAAAGAGCTCTTCTTTCTTCGCAGAAGAG 600
Query 586 CTCATGAAGAACGTCGCTTACCCGGTTTCTGGCTCTTGAATTGGCACTTCTTCTTCACCG 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 CTCATGAAGAACGTCGCTTACCCGGTTTCTGGCTCTTGAATTGGCACTTCTTCTTCACGG 660
Query 646 CTATGTTGTTTGTATATGGACGTATCATTCAACAGCAGCTAGTCAACACGGTTTCTTCAG 705
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 661 CTATGTTGTTTGTCTATGGACGCATCATTCAACAGCAGCTAGTCAACACGGTTTCTTCAG 720
Query 706 ACAGATTCATCTACAAGCTTGTGAGTGGTCTTATCAAGTACCAGATGGTTATTTGCTACT 765
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATAGATTCATATACAAGCTTGTGAGTGGTCTTATCAAGTACCAGATGGTTATTTGCTACT 780
Query 766 TCCTGTACATCGCAGGTCTCATATGGTTTATCCTTACATTGAAGAATAAGATGTATAAGT 825
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCTTGTACATCGCAGGTCTCATATGGTTTATCCTTACATTGAAGAATAAGATGTATAAGT 840
Query 826 ATCAGTTTGGGCAATACGCTTGGACACATATGATCCTTATCATCGTCTTTACTCAATCTT 885
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 841 ATCAGTTTGGGCAATACGCTTGGACACATATGATCCTTATCGTTGTCTTTACTCAATCTT 900
Query 886 CTTTCACCGTCGCCAATATTTTCGAAGGGATCTTCTGGTTTCTACTGCCAGCAGCACTGA 945
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 901 CTTTCACCGTCGCCAATATTTTTGAAGGGATCTTCTGGTTTCTTCTACCAGCAGCACTGA 960
Query 946 TTGCTATGAATGATGTAGCGGCTTATTTCTTCGGCTTCTATTTCGGGAAAACTCCACTCA 1005
|||||||||| |||||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 961 TTGCTATGAACGATGTAGCAGCTTACTTCTTCGGTTTCTATTTCGGGAAAACTCCGCTCA 1020
Query 1006 TCAAGTTGTCTCCAAAGAAAACATGGGAAGGTTTCATTGGAGCATCAGTTGCAACTATAA 1065
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1021 TCAAGTTGTCTCCAAAGAAAACATGGGAAGGTTTCATCGGAGCATCAGTTGCAACTATAA 1080
Query 1066 TCTCTGCATTTATTTTTGGTAATGTCTTAGGCCAGTTCCAGTGGCTTACATGTCCAAGAA 1125
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1081 TCTCTGCATTTATTTTTGCTAATGTCTTAGGCCAGTTCCAATGGCTTACATGTCCAAGGA 1140
Query 1126 AGGATTTATCAACTGGTTGGCTTCATTGTGATCCAGGCCCTCTCTTCAGGCCCGAGTATT 1185
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1141 AGGATTTATCAACTGGTTGGCTTCATTGTGATCCAGGCCCTCTCTTCAGGCCAGAGTATT 1200
Query 1186 ACCCATTGCCCTCTTGGATTGCTCCATTTTCTCCATGGAAAGGGATCTCGACCCTGCCTG 1245
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ACCCATTTCCCTCTTGGATTACTCCATTTTCTCCATGGAAAGGGATCTCGACCCTGCCTG 1260
Query 1246 TCCAATGGCATGCTTTCTCTCTCGGTCTGTTCGCATCCATTATGGCACCTTTTGGTGGTT 1305
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1261 TCCAATGGCATGCTTTTTCTCTCGGTCTATTCGCATCCATTATGGCGCCTTTTGGTGGCT 1320
Query 1306 TCTTCGCAAGCGGTTTCAAAAGAGCTTTCAAGATCAAGGATTTCGGAGACAGCATACCAG 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TCTTCGCAAGCGGTTTCAAAAGAGCTTTCAAGATCAAGGATTTCGGAGACAGCATACCAG 1380
Query 1366 GACATGGAGGATTTACTGATAGAATGGATTGCCAAATGGTTATGGCGGTTTTCGCATACA 1425
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GACATGGAGGATTTACTGACAGAATGGATTGCCAAATGGTTATGGCGGTTTTCGCATACA 1440
Query 1426 TCTACATCCAATCATTCATTGTTAATCAGGACTACAGTGTCGAGATGATCCTAGACCAGA 1485
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1441 TCTACATCCAATCTTTCATTGTTAATCGGGACTACAGTGTCGAGATGATCCTAGACCAGA 1500
Query 1486 TATCGAGGAGCCTGGGACACGAGGAGCAGAAAATGCTTTATGTAAAGCTCGGAGATATTC 1545
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1501 TATCGAGGAGCCTGGGACACGAGGAGCAGAAAATGCTTTATGAAAAGCTCGGAGACATTC 1560
Query 1546 TTCAACATAAGTTGCA-GGGCAGGTTTTAAAAAGTGAGTGCAAGTTGTGTGACTCTGTTT 1604
|||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 1561 TTCAACATAAGTTGCAAGGG-AGGTTTTAAATAGTGAGTGCAAGTTTTGTGACTCTGTTT 1619
Query 1605 TCAGCTTCTTTCCCTATGGTTAGTTTCTGGCTGCATCAGACCATCTAAAACTTTAATTTG 1664
|||||||||||| ||||||||||||||||| || |||||||||| |||||| || |||||
Sbjct 1620 TCAGCTTCTTTCTCTATGGTTAGTTTCTGGTTGTATCAGACCATGTAAAACCTTGATTTG 1679
Query 1665 TATCTGATT-AATTAATCAAACAGAGACTTGGTA 1697
||||||||| || |||||||||||||||||||||
Sbjct 1680 TATCTGATTTAACTAATCAAACAGAGACTTGGTA 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83885110695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5