BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492127
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26750.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2224 0.0
> AT4G26750.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr4:13475694-13478523 REVERSE LENGTH=1561
Length=1561
Score = 2224 bits (1204), Expect = 0.0
Identities = 1382/1464 (94%), Gaps = 28/1464 (2%)
Strand=Plus/Plus
Query 1 GGGATTTTAGAGGCCCTCTCTGCGACGTCGTTTATAGTTTGCAATCAGAAGCGCGTCAAA 60
||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1 GGGATTTTAGAGGTCCTTTCTGCGACGTCGTTTCTAGTTTGCAATCAGAAGCGCGTTAAA 60
Query 61 TAAAGGAAAATTTCTTGAGC--TCTTGTC-T-----GTC--T--TA-ACAAA--T-C--A 102
|| ||||||||||||||||| | ||||| | || | | | ||| | | |
Sbjct 61 TACAGGAAAATTTCTTGAGCTGTTTTGTCTTAACAAATCAATCGGAGAAAAAGCTACGGA 120
Query 103 -ATCG-GAGAAGAGAGAATCTATGTCGAACGCAAACGAACCAGCCAGGGCTCTTCTACCT 160
||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 121 GCTCGAGAGAAGAGAGAATCTATGTCGAACCCAAACGAACCAGCCAGGGCTCTTCTGCCT 180
Query 161 TACCTGCAACGTGCCGATGAGCTGCAGAAGCATGAACCACTTGTTGCTTATTACTGTCGG 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACCTGCAACGTGCCGATGAGCTGCAGAAGCATGAACCACTTGTTGCTTATTACTGTCGG 240
Query 221 CTATATGCCATGGAACGAGGATTGAAGATTCCGCAGAGCGAGAGAACTAAGACCACCAAT 280
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTATATGCAATGGAACGAGGATTGAAGATTCCGCAGAGCGAGAGAACTAAGACCACCAAT 300
Query 281 TCAATTCTCATGTCTCTCATTAATCAACTTGAAAAGGATAAGAAATCATTGAATCTGTCC 340
|| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct 301 TCGATTCTCATGTCTCTCATTAATCAACTCGAAAAGGATAAAAAATCATTGACTCTGTCC 360
Query 341 CCAGATGACAATATGCATGTGGAGGGGTTTGCA-TTAAGTGTCTTTGCAAAGGCAGACAA 399
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 361 CCAGATGACAATATGCATGTGGAGGGGTTTGCACTT-AGTGTCTTTGCTAAGGCAGACAA 419
Query 400 GCAGGATCGTGCAGGAAGAGCTGACTTGGGCACTGCCAAAACTTTTTATGCTGCGA-CAA 458
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 420 GCAGGATCGTGCAGGAAGAGCAGACTTGGGCACTGCCAAAACTTTTTATGCTGCGAGC-A 478
Query 459 TCTTCTTTGAAATTCTGAGCCAGTTTGG-CCCTGTACCTCCTGATATAGAGCAGAAACAG 517
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 479 TCTTCTTTGAAATTCTGAGCCAGTTTGGTCCC-GTACCTCCTGATATAGAGCAGAAACAC 537
Query 518 AAGTATGCTGCTTGGAAGGCTGCTGACATAAGGAAAGCCATTAAAGAAGGAAGGAAGCCC 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGTATGCTGCTTGGAAGGCTGCTGACATAAGGAAAGCCATTAAAGAAGGAAGGAAGCCC 597
Query 578 ACTCCAGGTGATCCTGTTGATGATGAAAATGATTTATCCATCCCATCAAGCGGTCCTAGT 637
||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 598 ACTCCAGGTGATCCTGTGGATGATGATACTGATTTATCCATCCCATCAAGCGGTCCTAGT 657
Query 638 GGCTCCTATGATCACGGTGCAAGTGATTCCAACACAACAAATCATCATAGAACAGAGCCT 697
||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 658 GGCTCCTATGATCACAGTGCAAGTGATACCAACACAACAAGTCATCATAGAACAGAGCTT 717
Query 698 GATCCATCCCATGACTCGAATGATGACTCCAGCCAACATCACTTCCCTGAAGTGCCACAA 757
|||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 718 GATCCACCCCATGACTCGAATGATGACTCCAGCCACCATCAATTCCCTGAAGTGCCACAA 777
Query 758 CACCCTCTACCTCCCAGGTTTCATGACAATCCTACCAACGATTATCCCACAGATGTCCCG 817
||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 778 CACCCTCTACCTCCCAGGTTTTATGACAATCCGACCAACGATTATCCCGCAGATGTCCCA 837
Query 818 CCTCCACCACCGTCTTCTTACCCTTCCAACGATC-TCCATCCCCCTCCCACGGGACCATC 876
|||||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||
Sbjct 838 CCTCCACCACCGTCTTCTTACCCTTCCAACGATCAT-CTTCCCCCTCCCACAGGACCATC 896
Query 877 AGACTCCCCTTACCAGCATCCTTACAGTCATCAACCATACCACCAAGACCCGTCACAACA 936
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 897 AGACTCCCCTTACCCGCATCCTTACAGTCATCAACCATACCACCAAGACCCGCCAAAACA 956
Query 937 CATGCCGCCACCACAAAACTACTCAGCCCATGAGCCTTCTCCAAATTCTCTCCCCAATTT 996
|||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 957 CATGCCGCCACCGCAAAACTACTCATCTCATGAGCCTTCTCCAAATTCTCTCCCTAATTT 1016
Query 997 CCAATCTTATCCTAGCTTTAGTGAGAGCAGCCTCCCATCCACTCCTCCCCACTACCCTTC 1056
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1017 CCAATCTTATCCTAGCTTTAGTGAGAGCAGCCTCCCATCCACTTCTCCCCACTACCCTTC 1076
Query 1057 TCACTACCAAAACCCAGAACCTTACTATTCTTCTCCGCATTCCGCACCTGCTCCTTCTTC 1116
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1077 TCACTACCAAAACCCAGAACCTTACTATTCTTCTCCGCACTCTGCACCTGCTCCTTCTTC 1136
Query 1117 CACAAGCTTCTCCTCTGCTCCTCCTCCTCCACCTTACTCATCAAACGGGCGTATCAATAT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CACAAGCTTCTCCTCTGCTCCTCCTCCTCCACCTTACTCATCAAACGGGCGTATCAATAT 1196
Query 1177 TGCTCCTGTGCTAGATCCTGCACCGAGTCCAGCTCAGAAGTACCATTACGACAGCAGCTA 1236
|||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1197 TGCTCCCGTGCTAGATCCTGCACCGAGTTCAGCTCAGAAGTACCATTACGATAGCAGCTA 1256
Query 1237 CCAGCCAGGGCCTGAGAAGGTTGCAGAGGCACACAAGGCTGCTAGATTCGCTGTGGGAGC 1296
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1257 CCAGCCAGGGCCTGAGAAGGTTGCAGAGGCACTCAAGGCTGCTAGATTCGCTGTGGGAGC 1316
Query 1297 TTTGGCTTTTGATGAAGTCTCGACTGCTGTAGAACATCTGAAGAAGTCACTTGAGTTGCT 1356
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1317 TTTGGCTTTTGATGAAGTCTCGACTGCTGTAGAACATCTCAAGAAGTCACTTGAGTTGCT 1376
Query 1357 AACAAATCCATCGGCCGGTGCCGGTCACTGAATTTTATATTTAATCTATGAAACTTGGGG 1416
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1377 AACAAATCCATCGGCCGGTGCCGGTCACTGAATTTTATATCTAATCTATGACACTTGGGG 1436
Query 1417 TTGATGTTAgtgtgtgtgtgtgtT 1440
|||||||||||| |||||||||||
Sbjct 1437 TTGATGTTAGTGCGTGTGTGTGTT 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5