BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492129
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16030.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1336 0.0
AT4G26730.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 741 0.0
> AT2G16030.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr2:6973673-6974899
REVERSE LENGTH=1227
Length=1227
Score = 1336 bits (723), Expect = 0.0
Identities = 913/1002 (91%), Gaps = 24/1002 (2%)
Strand=Plus/Plus
Query 1 CGGCGACGATGGAGAGAAACGTCGAGAAGATGCTAAACAGAGTATCAGTCGTGTTCATAA 60
|||||||||||||||||||||||||||||||||| || ||||||||| | |||||| |||
Sbjct 1 CGGCGACGATGGAGAGAAACGTCGAGAAGATGCTGAAGAGAGTATCAATAGTGTTCTTAA 60
Query 61 GCATCGGAACAGTGTTAATGGTTATTATGATTCTCCAGACGCCGAAAACTTGTATTTCGC 120
||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||| |
Sbjct 61 GCATCGGAACAGTATTAATGGTAATTATGATTCTCCAGACACCAAAAACTTGTATTTCTC 120
Query 121 CAGAAGCTCCATCGAAACCTCATACGCATTTTCCGAGATCCACCTGCGATTCATCGCCTC 180
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 121 CAGAAGCTCCATCGAAACCTCATACGCATTTCCCGAGATCTACATGCGATTCATCGCCTC 180
Query 181 GTCAGCATCTTCCTCTCCCAAAGAAGAACGCTCGACTCTGGTCCTCTAAAGCTTGGAAAT 240
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 181 GTCAGCATCTTCCTCTCCCAAAGAAGAACGCTCGAATCTGGTCCTCTGGAGCTTGGAAAT 240
Query 241 CGCGTCTCTCCTCCTTCTCAAATTACTTCCTCCGATTTCGCGATCTCGGATTCCTTCAAA 300
| ||||| | ||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 241 CTCGTCTATACTCCTTCTCTACCTACTTCCTCCGATTTCGCGATCTCGGATTCATTCAAA 300
Query 301 AGCACACCAAAGCTCTCTGTCTCTCCGCCGGCGCAGGCCACACTCCGATGGCGCTTTCTA 360
| ||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||
Sbjct 301 ATCACACCAAAGCTCTCTGTCTCTCCGCCGGAGCAGGCCATGCTCTGATGGCTCTTTCTC 360
Query 361 ATATCGGATTAGCTGACGTTACCGCCGTTGAATTGGTTGATTCGATTCCTCTTGTGAAAA 420
| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 AGATCGGATTATCTGATGTTACCGCAGTTGAATTGGTTGATTCGATTCCTCTTGTGAAAA 420
Query 421 GAGCTGATCCTCATAACCTTCCGTTTTTCGACGGTGTCTTTGATTTTGCCTTCACTGCAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGCTGATCCTCATAACCTTCCGTTTTTCGACGGTGTCTTTGATTTTGCCTTCACTGCAC 480
Query 481 ATCTAGCTGAAGCTCTGTTTCCGTGGCGGTTCGTGGAGGAAATGGAGAGGACTGTGCGAC 540
||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||| |||
Sbjct 481 ATCTAGCTGAAGCTCTGTTTCCGTGGCAGTTTGTGGAGGAGATGGAGAGGACGGTGAGAC 540
Query 541 GCGGTGGGTTTTGTGTGGTTGCGGTTGATGAATGTGGTGGAGATGATGTTAGAGACATTG 600
| || || |||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 541 GTGGCGGATTTTGTGTGGTTTCGGTTGATGAATGTGGTGGAGATGATGTAAGAGACATTG 600
Query 601 CTAGGCTTTTTCATAAATCGAAAGTCGTTGATGTTGCTAATGTAACCTTAGAAGGATCCA 660
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 601 CTAGGCTTTTTCATAACTCCAAGGTCGTTGATGTTGCTAATGTAACCTTAGAAGGATCCA 660
Query 661 AAAGGACTAGTATACTATTCAAAGTTCAAGACTCTACTACATGAGGTGTTTTAGTTTGTA 720
||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||
Sbjct 661 AAAAGACTAGTATACTATTCAAAGTTCAAGACTCTCCTACCTGAGGTGTTTTA-TTT--- 716
Query 721 TTCTTCTCTTTTGATTGCGTTGATTTATAGGTCCTTTCTGGATTCTCAGAAAACTGCTTC 780
|| || ||| |||| | || | || |||||| |||||||||||||||||||||
Sbjct 717 --CT-CT-TTT-GATT---T--AT--A--GGCCCTTTCCGGATTCTCAGAAAACTGCTTC 762
Query 781 AATGTTCATAGAGTGGAGCTAGATTTGTGTCTGTTGAATTTCACTTCCATGTTAGACAAA 840
||| |||||||||||||||||||||||| ||||||||| ||||||| |||||| || |||
Sbjct 763 AATATTCATAGAGTGGAGCTAGATTTGTTTCTGTTGAAATTCACTTACATGTTTGA-AAA 821
Query 841 -CAGGAG-TTTCAACAGATTATGTGGTAACATTGTTCAAAGACCATGACCATATTTGTTT 898
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GCAGGAGATTT-AACAGATTATGTGGTAACATTGTTCAAAGACCATGACCATATTTGTTC 880
Query 899 TCGATGCTAAACCAATGTTT-GTTGAGGGAAGCTGCAATGTTTGTTGCGAGTTCAAGATC 957
| ||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 881 TGGATCCTAAAGCAATGTTTTGTTGAGGGAAGCTGCGATGTTTGTTGCGAGTTCAAGATC 940
Query 958 CACAACAAAACCTTTCTACAGGTGAATATCTTCtttttttGG 999
|| ||||||| |||||||||||| |||||||| |||||||||
Sbjct 941 CAGAACAAAAGCTTTCTACAGGTTAATATCTT-TTTTTTTGG 981
> AT4G26730.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:13472579-13473309
FORWARD LENGTH=627
Length=627
Score = 741 bits (401), Expect = 0.0
Identities = 477/514 (93%), Gaps = 4/514 (1%)
Strand=Plus/Plus
Query 185 GCATCTTCCTCTCCCAAAGAAGAACGCTCGACTCTGGTCCTCTAAAGCTTGGAAATCGCG 244
||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 72 GCATCTTCCTCTCCCAAAGAAGAACGCTCGAATCTGGTTCTCTGGAGCTTGGAAATCGCG 131
Query 245 TCTCTCCTCCTTCTCAAATTACTTCCTCCGATTTCGCGATCTCGGATTCCTTCAAAAGCA 304
||| ||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 132 TCTATCCTCCTTCTCTACCTACTTCCTCCGATTTCGCGATCTCGGATTCATTCAAAATCA 191
Query 305 CACCAAAGCTCTCTGTCTCTCCGCCGGCGCAGGCCACACTCCGATGGCGCTTTCTAATAT 364
|||||||||||||||||| |||| ||| |||||||| |||||||||| |||||| | ||
Sbjct 192 CACCAAAGCTCTCTGTCTTTCCGACGGAGCAGGCCATGCTCCGATGGCTCTTTCTCAGAT 251
Query 365 CGGATTAGCTGACGTTACCGCCGTTGAATTGGTTGATTCGATTCCTCTTGTGAAAAGAGC 424
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 252 CGGATTATCCGACGTTACCGCAGTTGAATTGGTTGATTCGATTCCTCTTGTGAAAAGAGC 311
Query 425 TGATCCTCATAACCTTCCGTTTTTCGACGGTGTCTTTGATTTTGCCTTCACTGCACATCT 484
|||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 312 TGATCCTCATAACCTTCCGTTTTTCGACCGTGTCTTTGATTTTGTCTTTACTGCACATCT 371
Query 485 AGCTGAAGCTCTGTTTCCGTGGCGGTTCGTGGAGGAAATGGAGAGGACTGTGCGACGCGG 544
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 372 AGCTGAAGCTCTGTTTCCGTGGCGGTTCGTGGAGGAGATGGAGAGGACGGTGCGACGCGG 431
Query 545 TGGGTTTTGTGTGGTTGCGGTTGATGAATGTGGTGGAGATGATGTTAGAGACATTGCTAG 604
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 432 TGGGTTTTGTGTGGTTGCGGTTGATGAATGTAGTGGAGATGATGTTAGAGACATTGCTAG 491
Query 605 GCTTTTTCATAAATCGAA-AGTCGTTGATGTTGCTAATGTAACCTTAGAAGGA-TCCAAA 662
| |||||||||| || || | ||||||||||||||||||||||||||||| || || |||
Sbjct 492 GTTTTTTCATAATTCCAAGA-TCGTTGATGTTGCTAATGTAACCTTAGAAAGAGTC-AAA 549
Query 663 AGGACTAGTATACTATTCAAAGTTCAAGACTCTA 696
|| |||||||||||||||||| ||||||||||||
Sbjct 550 AGAACTAGTATACTATTCAAACTTCAAGACTCTA 583
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 660 AAAAGGACTAGTATACTATTCAAAGTTCAAGACTCT 695
||||||||||||||||||||||||||||||||||||
Sbjct 583 AAAAGGACTAGTATACTATTCAAAGTTCAAGACTCT 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54015786420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5