BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492139
Length=2593
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26660.1 | Symbols: | INVOLVED IN: biological_process unkno... 3539 0.0
AT5G55520.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinesin-r... 211 3e-53
> AT4G26660.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s:
Kinesin-related protein (InterPro:IPR010544); BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55520.2);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr4:13448684-13452016 FORWARD LENGTH=2693
Length=2693
Score = 3539 bits (1916), Expect = 0.0
Identities = 2396/2615 (92%), Gaps = 83/2615 (3%)
Strand=Plus/Plus
Query 24 AAAACAATGAAGTCTCCAGCGATATTAAGCGAGAACAGGTTCTTAGGCAGCATTACAAGT 83
||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 65 AAAACCATGAAGTCTCCGGCGATATTAAGCGAGAACAGGTTCCTAGGCAGCATTACAAGT 124
Query 84 TCTTCCATCAGAAATTTGCTTCCAAAATCCATCTCAACGAAGCAGAAACC-A--ATCCAA 140
||||||||| ||||| ||||||||||||| |||||| |||||||||||| | ||||||
Sbjct 125 TCTTCCATCCGAAATCTGCTTCCAAAATCTATCTCAGGGAAGCAGAAACCAATCATCCAA 184
Query 141 AACCCAGAAAATAAGATTCCCAGATCCAACGATGAGAACGCGATTCCTGTAGATCCAAA- 199
|||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 185 AACCCAGATACTAAGATTCCCAGATCCAACGACGAGAACGCGATTCCTGTAGATCCAAAC 244
Query 200 C--AA----A-C-ATC--C-CGCTGCTCTTCACTTCACGAAGCAATCTGACACCAAGGAT 248
| || | | ||| | | | |||||||| |||||||||||||||||| | ||||||
Sbjct 245 CAAAAGGCTAGCGATCATCACACCGCTCTTCAGTTCACGAAGCAATCTGACTCAAAGGAT 304
Query 249 GGTGAAACCCTAACAAATTTCCGAGAGCTTGA-TGAGGTCAATAAAATGGGACAAAACAA 307
| | | |||||| |||||| | | ||| ||||||||||||||||| ||
Sbjct 305 -G-G------T----AATTTCGGAGAGC-CAATTAAGGACAATAAAATGGGACAAAGCAC 351
Query 308 TTTTGCTGGAGACAAGCAAAGTCCTGC-GAAATCACCATTGAGGGTTGAATCCAGGAGTG 366
|||||||| |||||||| ||| || | | | |||||||| | ||||||||| ||||||
Sbjct 352 TTTTGCTGAAGACAAGCGCAGT-CTTCTGGATTCACCATTAAAGGTTGAATCAAGGAGTA 410
Query 367 TACTTTCTAAAAGAACCAATTCAATGCCTAGTGAAATTACAGAGGAAGA-G--GACGATC 423
||||||||| ||||||||||||| ||||||||||||||| ||||||||| | ||||| |
Sbjct 411 TACTTTCTAGAAGAACCAATTCAGTGCCTAGTGAAATTAAAGAGGAAGATGACGACGA-C 469
Query 424 -CATTGGGTGACCAGATTCGAGAACTAAAGGAAGAACTCATAAGAACAAAGTCTGATGGG 482
|||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 470 TCATTGGGTGATCAGATTCGTGAACTAAAGGAAGAGCTCATAAGAACAAAGTCGGATGGG 529
Query 483 T---ACAAACCTGATGGAAGTAAGAGCGGACACTTTGCACGGGACAGTTTAAGTCAATTG 539
| ||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 530 TACAACAAAGCTGATGCAAGTAAGAGTGGACACTTTGCACGTGACAGTTTAAGTCAATTG 589
Query 540 AGAGTCAGTATCAGCAAATCTTTACTCATGTCGAGTCCAAAAAGAGATGAATCTGAAGGG 599
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 590 AGAGTCAGTATCAACAAATCTTTACTCATGTCGTGTCCAAAAAGAGATGAATCTG-AGGG 648
Query 600 AAAGAGATGAATGTGGATCGTGATAATGATGGTGAAGATGTGCTGGAATTGAATAAACAT 659
||| ||| | || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 649 AAA-AGA-G---GT-GATCGTG-----GATGGTGAAGATGTGCTGGAATTGAATAAACAT 697
Query 660 ATCGAGAAG-TTGCAAGGTTCTTATGATTCTATTCAATCCTCATTTGCAAGTGCTTCAGG 718
|| |||||| || || ||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 698 ATTGAGAAGCTT-CACGGTTCTTATGATTCTGTTCACTCCTCATTTGCAAGTGCTTCATG 756
Query 719 CTGTGAAGCAGACTCGATGAGTGAAGATGATGATGATGATGTCTGCTCAGAAGACTTGGA 778
|| |||||| ||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 757 CTATGAAGCCGACTCGATGAGTG--GA-GATGATGAGGATGTCTGCTCAGAAGACTTGGA 813
Query 779 CAAACCCAA-GCATGGAAACCATGAAGATGCAGAATTTGTAGATGATGATCCAAGCCAGC 837
||| |||| ||||||||||||| |||||| || ||||||||| |||||||||||||||
Sbjct 814 GAAA-CCAATGCATGGAAACCATAAAGATGTTGACTTTGTAGATAATGATCCAAGCCAGC 872
Query 838 TCAACAATGTTGGATTCGATACAGCGGGTAGTAGCATTTCAATCAGATCACAGCTTCCTA 897
|| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 873 TCGACAATGTTGAATTCGATACAACGGGTAGTGGCATTTCAATCAGATCACAGCTTCCTA 932
Query 898 CATGTATTCTAGAAGAGCCAATTTTCTCAGAATCTCCAAAGTTCAAGAATGTTCAGAAGA 957
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 933 GTTGCGTTCTAGAAGAGCCAATTTTCTCAGAATCTCCAAAGTTTAAGAATGTTCAGAAGA 992
Query 958 GTGTAGCTGCATCGACAAAGTTTTCAGCAAGTCTTAGGAATGTGTCTGAGAGCTTCAACA 1017
|||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||||
Sbjct 993 GTGTAGCTGCATCGACAAAGTTTTCAGCAAATCCTAGGAATGTGTCTGAAAGCTCCAACA 1052
Query 1018 TCGGAGACATGAAAGTCAATGAAATTAGCCCGTCTATGTCAAAGAAGCTTTCAGGTCCTA 1077
| |||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||||
Sbjct 1053 TTGGAGACATGAAAGTCAATCAGATTAGCCCGTGTATGTCAAAGAAGGTTTCAGGTCCTA 1112
Query 1078 CAGATTCTATAGCTGCTAGTCTTCAGAGAGGGTTGCAAATTATAGACTATCATCAAGGGA 1137
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1113 CAGATTCTCTAGCTGCTAGTCTTCAGAGAGGGCTGCAAATTATAGACTATCACCAAGGGA 1172
Query 1138 GCTCACTATCAAAAAGTTCTTCTGTTTCCTTCTCTTTTGGCCATATGGCATTGAAACCTT 1197
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GCTCACTATCAAAAAGTTCATCTGTTTCCTTCTCTTTTGGCCATATGGCATTGAAACCTT 1232
Query 1198 GCGCAGAAGTTGACAATCTTAATGCTTCAGTCCAGTCATTTAGAAAAGATAAAGCGCCAG 1257
||||||||| ||| |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1233 GCGCAGAAGGTGAGAATCTTAATGCTTCAGTCCAATCTTTTAGAAAAGATAAAGCTTCAG 1292
Query 1258 AAGGTGGATTATCGTCCATTCTCCTATGTCTTTCATGTAGAAAGAAAGTTGACCAAGAAG 1317
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 AAGGTGGATTGTCGTCGATTCTCCTATGTCTTTCATGTAGAAAGAAAGTTGACCAAGAAG 1352
Query 1318 CTGAAGTAACACAAGAAGCGGGTTCAAACGAAAAACATCTCAAGAACATGTGTATGGAGC 1377
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 CTGAAGTAACAGAAGAAGCTGGTTCAAACGAAAAACATCTCAAGAACATGTGTATGGAGC 1412
Query 1378 AAGCAGCTAAAATTGAGGAGCTAACTCGCCTGCTTAGGAAATCAG--G-T------GATG 1428
||||||||||||||||||||||||||| ||||||||||||||||| | | ||||
Sbjct 1413 AAGCAGCTAAAATTGAGGAGCTAACTCTCCTGCTTAGGAAATCAGATGATGGAGAAGATG 1472
Query 1429 GAACAGAGTTCATCAAAGAAACATATGAGATAAAACAAATTAGCCAAGAGTTTGGAGAAA 1488
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1473 GAACAGAGTTCATCAAAGAAACATATGAGACGAAACAAATTAGTGAAGAGTTTGGAAAAA 1532
Query 1489 CAAA-TTTGGAGGTAAGTGAAAAGGAAGCTCTTCTCAAGGAGATTGCATACCTAAAGAGC 1547
|||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1533 CAAACTTT-GAGGTAAGTGAAAAGGAAGCTCTTCTCAAGGAGATTGCAGACCTAAAGAGC 1591
Query 1548 AAGCTGCAGCCTACTAAGTCTACAAACAATCTGAGATCCTCTTTGCTACTACGATCCATT 1607
|||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||
Sbjct 1592 AAGCTGCAGCCTACTAAGTCCACAGACAATCTGAGATCCTCGTTACTACTACGATCCATT 1651
Query 1608 CAAATGCGCAAAAGCATTGATGTTACCAAGAATGGTGAGAACAGTGATGTTCTAGCGAAA 1667
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1652 CAAATGCGCAAAAGCATTGATGTTAGCAGGAATGGTGAGAACAGTGATGATCTAGCGAAA 1711
Query 1668 GAAAGGGAGATGTGGACAGAAATGGAGAGTGAGTGGATATCTTTAACAGATGATCTCAGA 1727
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1712 GAAAGGGAGATGTGGACAGAAATGGAGAGTGAGTGGATATCCTTAACAGATGATCTCAGA 1771
Query 1728 ATGGATATCGATAACCATCGCAGTCGAGCTGAGAATCTAGAGATTGAGCTCAAGCAAGAG 1787
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1772 ATGGATATCGATAACCATCGCAGTCGAGCTGAGAATCTAGAGTTTGAGCTCAAGCAAGAG 1831
Query 1788 AAGCTAGCCACTGAAGAGTTGAATGATGCGCTCACTAGAGCTGTGCTTGGCCACAGTAGA 1847
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1832 AAGCTAGCCACTGAAGAGTTGAATGACGCGCTCACTAGAGCTGTGCTTGGCCACAGTAGA 1891
Query 1848 TTCATAGAGCAGTACACGGAGCTGCAGGAGAAGTACAATGAACTCGGGGAGAAACACAGT 1907
||||||||||||||||| ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct 1892 TTCATAGAGCAGTACACAGAGCTGCAGGAGACGTACAATGAACTTGGGGAGAAGCACAGT 1951
Query 1908 GTGATGATGGCTGGAATAACAGATGTAAAGAAAGCAGCCTCCAAGGCCGCTATGAACGGT 1967
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1952 GTGATGATGGCTGGAATAACAGATGTAAAGAAAGCAGCATCCAAGGCCGCTATGAACGGC 2011
Query 1968 CGCCATGGAAAGCGTTTTGCCAAAGCCTTTTCAGATGAGCTTTCTGCCATCagagctgag 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 CGCCATGGAAAGCGTTTTGCCAAAGCCTTTTCAGATGAGCTTTCTGCCATCAGAGCTGAG 2071
Query 2028 aaggagaaagaaagagagctcttgaagaaggagaacaagaacctaagaaCTCAGCTGCGA 2087
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 AAAGAGAAAGAAAGAGAGCTCTTGAAGAAGGAGAACAAGAACCTAAGAACTCAGCTGCGA 2131
Query 2088 GATACAGCTGAAGCTGTCCAAGCTGCTGGTGAACTACTTGTCAGACTTAGAGAATCTGAA 2147
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2132 GATACAGCTGAAGCAGTCCAAGCTGCTGGTGAACTACTTGTCAGACTTAGAGAATCTGAA 2191
Query 2148 CAAGTCTTACAAATCTCTGAGGAACGATTCAGCGTAGTGGAAGAAGAGAAAGAGAGGCTG 2207
|| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2192 CAGGCCTTACAAGTCTCTGAGGAACGATTCAGCGTGGTGGAAGAAGAGAAAGAGAGGCTG 2251
Query 2208 AAGAAGCAAATGGAGCAGCTAAAGAGCAAACACAAGACAGAAATAGGGACAATGAAGCAA 2267
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2252 AAGAAGCAAATGGAGCAACTAAAGAGCAAACACAAGACAGAAATAGGGACAATGAAGCAA 2311
Query 2268 TACTTAGCAGAGAGTAAATTACCAGGATCTGCATTGTTGCAGCCATGGTACAAAGATGAG 2327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2312 TACTTAGCAGAGAGTAAATTACCAGGATCTGCATTGTTGCAGCCATGGTACAAAGATGAG 2371
Query 2328 GAAGATGAAATAGAACAAGTATCAGAACATCGAA-CCGGAGCTGTGAGTTTCGATGAGTA 2386
|||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||
Sbjct 2372 GAAGATGAAATAGAACAAGTATCAGAACAT-GAAACCGGAGCTGTCAGTTTCGATGACTA 2430
Query 2387 CGAGGATGATCAGGCTTGGAGAGCAGAGTTTGGAGCTACATATCAAGACCACCATTACT- 2445
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431 CGAGGATGATCAGGCTTGGAGAGCAGAGTTTGGAGCTACATATCAAGACCACCATTACTA 2490
Query 2446 GA-TT-GTTTCAGACAAAAGACTCTTCTCGGGTCATTTACTGTGATCCTCCTAAGTAGTA 2503
| || |||||||||||| ||| |||||||||||||||||| |||||||||| |||||
Sbjct 2491 GTCTTTGTTTCAGACAAACGACCCTTCTCGGGTCATTTACTATGATCCTCCT---TAGTA 2547
Query 2504 CTCTTCTTACTTTTATC----ATGTTGTTGTTCTCTTGTA-CTGCCATTATTGAACCGCT 2558
|| || | ||| ||||| || |||||||||| ||||| |||||||||||||||||||
Sbjct 2548 CTTTTGT-ACTGTTATCTTTCATTTTGTTGTTCTATTGTATCTGCCATTATTGAACCGCT 2606
Query 2559 ACAAGGATCTGTAACGGTTGGAAACATTTTTACAT 2593
| || ||| ||||||||||||||||||||||||||
Sbjct 2607 AAAAAGATTTGTAACGGTTGGAAACATTTTTACAT 2641
> AT5G55520.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinesin-related
protein (InterPro:IPR010544); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G26660.1); Has
32425 Blast hits to 20462 proteins in 1550 species: Archae
- 335; Bacteria - 3392; Metazoa - 16996; Fungi - 2645; Plants
- 1561; Viruses - 54; Other Eukaryotes - 7442 (source: NCBI
BLink). | chr5:22488074-22491266 REVERSE LENGTH=2628
Length=2628
Score = 211 bits (114), Expect = 3e-53
Identities = 326/423 (77%), Gaps = 36/423 (9%)
Strand=Plus/Plus
Query 352 TTGAATCCAGGAGTGTACT-TTCTAAAAGAACCAATTCAATGCCTAGTGAAATTACAGAG 410
||||| | | ||||||||| || | |||| | || |||||| ||| ||| |||||||||
Sbjct 378 TTGAAGCGAAGAGTGTACTCGTC-ACAAGAGCTAACTCAATGGCTAATGAGATTACAGAG 436
Query 411 GAAGAGGACGATCCATTGGGTGACCAGATTCGAGAACTAAAGGAAGAACTCATAAGAACA 470
| | | || ||| |||||||| |||||||||| || |||||||| ||||| ||||||||
Sbjct 437 G-A-A-GATGATTCATTGGGTCACCAGATTCGTGACCTAAAGGAGGAACTAATAAGAACC 493
Query 471 AAGTCTGATGGGTACAAACCTGATGGAAGTAAGAGCGGACACTTTGC-ACGGGACAGTTT 529
||||||||||||||||||||||||||||| |||| || |||||| | |||| |||||
Sbjct 494 AAGTCTGATGGGTACAAACCTGATGGAAGCAAGAATGGTTACTTTGTGA-GGGAGAGTTT 552
Query 530 AAGTCAATTGAGAGTCAGTATCAGCAAATCTTTACTCATGTCGAGTCCAAAA-AGAGATG 588
|||||||||||| ||| |||| ||| |||||| |||||||| || |||| ||| | |
Sbjct 553 GAGTCAATTGAGAAACAGCATCAACAAGTCTTTAGTCATGTCGTGTG-AAAACAGACAAG 611
Query 589 AATCTGAAG-GGAAAGAGATGAATGTGGATCGTGATAATGATGGTGAAGATGTGCTGGAA 647
|| ||| ||||| | ||| ||| ||| | | || ||||| ||| | | | |||||
Sbjct 612 GTTCAGAAAAGGAAACA-ATGTATGAGGAG-GAG-TA-TGATGATGATG-TA-G-TGGAA 664
Query 648 TTGAATAAACATATCGAGAAGTTGCA-A------G-G-TTCT--T-AT--GA----TTCT 689
||| |||||| || | ||||| || | | | |||| | || || ||||
Sbjct 665 CTGAGTAAACACATTAACAAGTTTCACACTAACTGTGATTCTGATGATTTGAGGGATTCT 724
Query 690 ATTCAATCCTCATTTGCAAGTGCTTCAGGCTGTGAAGCAGACTCGATGAGTGAAGATGAT 749
||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||| ||
Sbjct 725 ATTCAATCCTCCTTTGCAAGTGCTTCAGGCTGTGAAGCAGATTCAATGAGTGGAGACGA- 783
Query 750 GAT 752
|||
Sbjct 784 GAT 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128728375738
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5