BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492141
Length=2401
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 3548 0.0
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 874 0.0
> AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13444850-13448212 FORWARD LENGTH=2509
Length=2509
Score = 3548 bits (1921), Expect = 0.0
Identities = 2285/2444 (93%), Gaps = 91/2444 (4%)
Strand=Plus/Plus
Query 1 TTCTTACACCAAAAGAGAGAAGCAAATCTCAAATTCTTCCCCCCTATTATTATATGTGAC 60
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 18 TTCTAACACCAAAAGAGAGAAGCAAATCTCAAATTCTT--CCCCTATTATTATATGTGAC 75
Query 61 TGTTGTTGTTGTTCTCTCTTTTACCATCTTTGGCCTGAAGaaaaaaaaaaaaaaaGGAAT 120
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 76 TGTTGTTGTTTTTCTCTCTTTTACCATCTTTGGCCTGAAG-----AAAAAAAAAAGGAAT 130
Query 121 CCTTCTTAATGGATTTGGTAAATCAATTAAGAAAGCATTACACAAAATAAAAAAGGAAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 CCTTCTTAATGGATTTGGTAAATCAATTAAGAAAGCATTACACAAAATAAAAAAGGAAAG 190
Query 181 ATTTTTAATAAG---C-TTgagagagagatatagagagagaaagagagagagagaggcca 236
||||||||||| | ||||||||||||||||||||||| || | ||||||||||||||
Sbjct 191 TTTTTTAATAAGCTTCATTGAGAGAGAGATATAGAGAGAG-AA-A-AGAGAGAGAGGCCA 247
Query 237 tatttttgataagagaagaagaaccctatagagaaagagaaagagaaagagagagacaga 296
|| |||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 248 TA-TTTTGATAAGAGAAGAAGAACCCT-T----ATAGAGAAAGAGAAAGAGAGAGACAGA 301
Query 297 gagagTGGATGGATGTCGTATAGAATGAACAAAACATCCTCTGTTTCTCTTGTCCTTGTC 356
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GAGAGTGGATGGATGTCTTATAGAATGAACAAAACATCCTCTGTTTCTCTTGTCCTTGTC 361
Query 357 CCTTTTTCCAGATCTTAAGGTTTCCCACATTTTATCATCTGGGCCCTCTCCTTAATGATT 416
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 362 CCTTTTTCCAGATCTTAAGGTTTTCCACATTTTATCATCTGGGTCCTCTCCTTAATGATT 421
Query 417 TGAAGATAC-CAAATTCCTATTTGATC-GGGACTAGAATTTGGATTCTGTTTCAGACAAA 474
|||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 422 TGAAGACACTC-AATTCCTATTTGATCGGGGACTAGAATTTGGATTCTGTTTCAGACAAA 480
Query 475 AGTAGATTTCCCTG--TC--T--C-------TTT--ATAAGATGAATCTGGAGGAGCAAA 519
|||||||||||||| || | | ||| |||||||||||| |||||||||||
Sbjct 481 AGTAGATTTCCCTGTCTCTTTCCCGTTTGATTTTCAATAAGATGAATCCGGAGGAGCAAA 540
Query 520 AGATGGAATCTGCATCGGATCTGGGGAAGCTCTTCATTGGCGGGATTTCATGGGATACAG 579
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 541 AGATGGAATCTGCATCGGATCTGGGCAAGCTCTTCATTGGCGGGATTTCATGGGACACAG 600
Query 580 ATGAAGAACGACTGCAAGAGTATTTTGGCAAGTATGGAGATTTGGTTGAAGCTGTGATCA 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGAAGAACGACTGCAAGAGTATTTTGGCAAGTATGGAGATTTGGTTGAAGCTGTGATCA 660
Query 640 TGAGAGACCGTACTACTGGACGTGCCCGTGGCTTTGGGTTTATCGTTTTTGCAGATCCTT 699
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGAGAGACCGTACTACCGGACGTGCCCGTGGCTTTGGGTTTATCGTTTTTGCAGATCCTT 720
Query 700 CTGTTGCAGAGAGAGTCATCATGGACAAACACATCATTGATGGCCGTACGGTCGAGGCGA 759
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 CTGTTGCCGAGAGAGTCATCATGGACAAACACATCATTGATGGCCGCACGGTCGAGGCGA 780
Query 760 AGAAAGCTGTCCCGCGGGATGATCAGCAAGTGCTAAAACGACACGCCAGTCCAATGCACC 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGAAAGCTGTCCCGCGGGATGATCAGCAAGTGCTAAAACGACACGCCAGTCCAATGCACC 840
Query 820 TTATCTCACCTAGCCATGGTGGTAATGGTGGTGGTGCACGGACAAAGAAGATCTTTGTTG 879
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 TTATCTCACCTAGCCATGGTGGTAATGGTGGTGGAGCACGGACAAAGAAGATCTTTGTTG 900
Query 880 GAGGTTTACCGTCTAGCATTACTGAGGCCGAGTTCAAGAACTACTTTGATCAGTTTGGTA 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAGGTTTACCGTCTAGCATTACTGAGGCCGAGTTCAAGAACTACTTTGATCAGTTTGGTA 960
Query 940 CAATTGCTGACGTTGTGGTAATGTATGATCATAATACACAGAGGCCAAGAGGCTTTGGCT 999
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAATTGCTGATGTTGTGGTAATGTATGATCATAATACACAGAGGCCAAGAGGCTTTGGCT 1020
Query 1000 TCATCACATTTGATTCCGAAGAGTCTGTTGATATGGTTCTCCACAAGACCTTTCATGAGC 1059
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCATCACTTTTGATTCCGAAGAGTCTGTTGATATGGTTCTCCACAAGACCTTTCATGAGC 1080
Query 1060 TAAACGGAAAAATGGTTGAGGTTAAAAGAGCAGTGCCAAAGGAGCTCTCCTCGACTACTC 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TAAACGGAAAAATGGTTGAGGTTAAAAGAGCAGTGCCAAAGGAGCTCTCCTCGACTACTC 1140
Query 1120 CTAACCGAAGCCCTCTTATTGGGTATGCTAACAACTACGGAGTAGTCCCTAATAGGTCAT 1179
||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 1141 CTAACCGAAGCCCACTTATTGGGTATGGTAACAACTATGGAGTAGTCCCTAATAGGTCTT 1200
Query 1180 CTGCTAATAGCTACTTCAATAGTTTTCCTCCTGGTTATAATAATAATAATCTAGGCTCTG 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTGCTAATAGCTACTTCAATAGTTTTCCTCCTGGTTATAATAATAATAATCTAGGCTCTG 1260
Query 1240 CTGGCCGGTTTAGTCCTATTGGTAGCGGTAGAAATGCTTTCTCTAGCTTTGGGCTTGGTT 1299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1261 CTGGCCGGTTTAGTCCTATTGGTAGCGGTAGAAATGCTTTCTCTAGCTTCGGGCTCGGAT 1320
Query 1300 TGAATCAAGAACTAAATTTGAATTCAAGCTTTGATGGAAACACTCTTGGGTATAGCCGGA 1359
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1321 TGAATCAAGAACTGAATTTGAATTCAAACTTTGATGGAAACACTCTTGGGTATAGCCGGA 1380
Query 1360 TCCCAGGCAACCAGTACTTCAACAGTGCTTCACCAAACCGTTACAACTCTCCAATTGGGT 1419
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TCCCTGGCAACCAATACTTCAACAGTGCTTCACCAAACCGTTACAACTCTCCAATTGGGT 1440
Query 1420 ACAATAGAGGCGACTCTGCTTACAACCCGAGCAACAGAGACTTATGGGGAAACAGAAGTG 1479
|||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1441 ACAACAGAGGAGACTCTGCTTACAACCCGAGCAACAGAGACTTGTGGGGAAACAGAAGCG 1500
Query 1480 ATTCTTCTGGTCCCGGTTGGAACTTGGGAGTTTCGGTTGGTAATAACAGAGGAAACTGGG 1539
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1501 ATTCCTCTGGTCCAGGTTGGAACTTGGGAGTTTCGGTTGGTAACAACAGAGGAAACTGGG 1560
Query 1540 GACTTTCTTCTGTGGTGAGCGATACCAATGGCTTTGGAAGAACCTATGGGGCTGGTTCTG 1599
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1561 GACTTTCTTCTGTGGTGAGCGATAACAATGGCTATGGAAGAAGCTATGGGGCTGGTTCTG 1620
Query 1600 GACTTTCTGGGTTATCATTCTCGGGTAACACAAACGGTTTTGATGGCTCTATAGGGGAAT 1659
||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1621 GACTTTCGGGGTTATCATTCGCGGGTAATACAAACGGTTTTGATGGCTCTATAGGGGAAT 1680
Query 1660 TGTATAGAGGCAGCTCAGTTTATAGCGACTCAACGTGGCAGCAGTCAATGCCTCATCATC 1719
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1681 TGTATAGAGGCAGCTCAGTTTATAGCGACTCAACATGGCAGCAGTCAATGCCTCATCATC 1740
Query 1720 AGCCTTCTAATGAGTTAGACGGCTTGTCTCGCTCTTATGGCTTTGGTATTGACAATGTAG 1779
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 AGTCTTCTAATGAGTTAGACGGCTTGTCTCGCTCTTATGGCTTTGGTATTGACAATGTAG 1800
Query 1780 GCTCAGACCCATCTGCCAATGCCTCAGAAGGTTACCCCCAAAACTACAATGTCGGAAATA 1839
||||||||||||| ||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 1801 GCTCAGACCCATCAGCCAATGCCTCAGAAGGATACTCCGGAAACTACAATGTCGGAAATA 1860
Query 1840 GACAAACACATAGAGGTATTGAAGCATAGAAA-AG-TCGACGAAGAGAAGTGAGATTTGT 1897
|||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 1861 GACAAACACATAGAGGTATTGAAGCATAGAAAGAAATCGACGAAGAGAAGTGAGAATTGT 1920
Query 1898 AGATCAAGAA---CAGCCATTTCCGTTGCAGAGTTTGAAGAGTTGTTATT-CAATATCAA 1953
|||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1921 AGATCAAGAAGAACAGCCATTTCCGTTGCAGAGTTTGAAGAGTTGTTATTTCGATATCAA 1980
Query 1954 GTAGAGAAAGAAACCAACTTTCTTCATCACAGTGAGTTTCTTGtttt-tttttttCGTCG 2012
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1981 GTAGAGAAAGAAACCAACTTTCTTCATCACAGTGAGTTTCTTGTTTTGTTTTTTTCGTCG 2040
Query 2013 TTAGCATCACAAACACaaaaaaaaaaaGAGAAGttttttttttttACTTTTAAAATTCTT 2072
|||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||
Sbjct 2041 TTAGCATCACAAACACAAAAAA-----GAGAAGTTTATTTTT---ACTTTAAAAATTCTT 2092
Query 2073 ACATAAGATAAGATCAGATTGGTAGCTGCAAAGATACAACATGGATGATAAAAAGACTTG 2132
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 2093 ACATAAGATAAGATCAGATTGGTAGCTGCAAAGATACAACATGGATGATAAAAAAA---G 2149
Query 2133 GTTTCAGCGTTTCGTCTCCATAGCAATAACCAGAGATCGTTGATTCTCGATCACTATTCT 2192
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 ATTT--G-GTTTCGTCTCCATAGCAATAACCAGAGATCGTTGATTCTCGATCACTATTCT 2206
Query 2193 TTAGGTTTCTCTTCTTCTTCTTCCAAGATT-CTTGATGTTGTGTGCTCTGTTTGTAACTC 2251
|||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 2207 TTAGGTTTCTCTCCTTCTTCTTCCATGATTTCTTGATGTTGTGTGCTCTGTTTGTAACTC 2266
Query 2252 TAATTGTGAAAttttttttt-ttA-A-ACTTTCGATT-C----G------AA--TT-G-- 2292
||||||| ||| |||||| | ||| | | ||| || | | || || |
Sbjct 2267 TAATTGTTAAAATTTTTTATGTTACAGATTTTTTTTTTCTTTTGGTTTTTAAACTTTGGA 2326
Query 2293 TTC-A-T-G-----GG-AACTTTTGAATTTT-CTATTAGCGTGAGAGAAAACA--TTGTG 2340
||| | | | || |||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 2327 TTCGAATTGTTCATGGGAACTTTTGGATTTTTCTATTAGCGTGAGAGAAAACACATTGTG 2386
Query 2341 CAAAAGGCTCCAAAATGATTATTTTGTTGCATTTGATATTTTTT 2384
|||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 2387 CAAAAGGCTCCAAAATGATTATTTTGTTACATTTCATACTTTTT 2430
> AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502064-22504011 REVERSE LENGTH=1640
Length=1640
Score = 874 bits (473), Expect = 0.0
Identities = 1097/1382 (79%), Gaps = 108/1382 (8%)
Strand=Plus/Plus
Query 533 ATCGGATCTGGGGAAGCTCTTCATTGGCGGGATTTCATGGGATACAGATGAAGAACGACT 592
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
Sbjct 192 ATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACAGACGAAGAAAG-GT 250
Query 593 GCAAGAG--TATTTTGGCAAGTATGGAGAT-TTGGTTGAAGCTGTGATCATGAGAGACCG 649
||||| || ||| |||| ||||| ||| || ||||||||||||||||||||||| ||
Sbjct 251 -TAAGAGACTACTTTAGCAACTATGGTGATGTT-GTTGAAGCTGTGATCATGAGAGATCG 308
Query 650 TACTACTGGACGTGCCCGTGGCTTTGGGTTTATCGTTTTTGCAGATCCTTCTGT-TGCAG 708
| | || || ||||| |||||||| || || || || |||||||| || | ||| | |||
Sbjct 309 TGCCACAGGTCGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGACCCCTGTGTCT-CAG 367
Query 709 AGAGAGTCATCATGGACAAACACATCATTGATGGCCGTACGGTCGAGGCGAAGAAAGCTG 768
||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 368 AGAGAGTGATCATGGATAAACACATCATCGATGGCCGCACGGTTGAGGCGAAGAAGGCTG 427
Query 769 TCCCGCGGGATGATCAGCAAGTGCTAAAACGACACGCCAGTCCAATGCACCTTATCTCAC 828
| || || ||||||||||| |||||||| |||||||| ||||| || |||||||| ||||
Sbjct 428 TGCCTCGAGATGATCAGCAGGTGCTAAAGCGACACGCTAGTCCTATCCACCTTATGTCAC 487
Query 829 CTAG-CCATGGTGGTAATGGTGGTGGTGCACGGACAAAGAAGATCTTTGTTGGAGGTTTA 887
|| | ||| ||| ||||||| | | | |||||||||||||||| ||||||||||||
Sbjct 488 CT-GTCCA---TGG---TGGTGGT-G-G-AAGGACAAAGAAGATCTTCGTTGGAGGTTTA 537
Query 888 CCGTCTAGCATTACTGAGGCCGAGTTCAAGAACTACTTTGATCAGTTTGGTACAATTGCT 947
|||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 538 CCGTCTAGCATTACCGAGGAGGAGTTCAAGAACTACTTTGATCAGTTTGGTACTATTGCT 597
Query 948 GACGTTGTGGTAATGTATGATCATAATACACAGAGGCCAAGAGGCTTTGGCTTCATCACA 1007
|| ||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 598 GATGTTGTTGTAATGTATGATCATAACACGCAGAGGCCAAGAGGTTTTGGCTTCATCACA 657
Query 1008 TTTGATTCCGAAGA-GTCTGTTGATATG-GTTCTCCACAAGACCTTTCATGAGCTAAACG 1065
|||||||| || || | ||||||||| | ||||| ||||||||||| |||||||| || |
Sbjct 658 TTTGATTCAGATGATG-CTGTTGATA-GAGTTCTTCACAAGACCTTCCATGAGCTCAATG 715
Query 1066 GAAAAATGGTTGAGGTTAAAAGAGCAGTGCCAAAGGAGCTCTCCTC-GACTACTCCTAAC 1124
| ||| | |||||||| |||||||| || || |||||| | ||| | | | || || |
Sbjct 716 GGAAACTAGTTGAGGTCAAAAGAGCTGTACCTAAGGAGATTTCCCCTGTTT-CTAATATC 774
Query 1125 CGAAGCCCTCTTATT-G-GGTATGCTAACAACTACGGAGTAGTCCCTAATAGGTCAT-C- 1180
|||||||| ||| | | ||| | |||| | | |||| | |||||||| || |
Sbjct 775 CGAAGCCCGCTTGCTAGCGGTGT--TAACTA-T--GGAGGCGGGTCTAATAGG--ATGCC 827
Query 1181 TGCTAATAGCTACTTCAATAGTTTTCCTCCTGGT--TA-TAATAATAATAATCTAGGCTC 1237
||||||||||||||| || | ||| |||||||| | | | |||| | |||||| ||
Sbjct 828 TGCTAATAGCTACTTTAACAACTTTGCTCCTGGTCCTGGTTTTTATAACAGTCTAGG-TC 886
Query 1238 -TGCTGG-C--CGGTTTAGTCCT---ATTGGTAGCGGTAGAAATGCT-TTCTCTAGCTTT 1289
|| ||| | |||||||||||| |||||||| ||||||||||| || ||| |||||
Sbjct 887 CTGTTGGTCGTCGGTTTAGTCCTGTTATTGGTAGTGGTAGAAATGCGGTT-TCT-GCTTT 944
Query 1290 GGGCTT-GGTTTGAATCAAGAACT--A-----AATTTGAATTCAAGCTTTGATGG-A-AA 1339
||| | ||||||||||| || || | ||||||||| |||||| ||||| | ||
Sbjct 945 TGGCCTCGGTTTGAATCATGA-CTTGAGTTTGAATTTGAATCCAAGCTGCGATGGGACAA 1003
Query 1340 CA-CT-C-TTGGGT-ATAGCCGGATCCCAGGCAACCAGTACTTCAACAGTGCTTCACCAA 1395
|| | || ||| ||| ||| || ||| |||||| ||||||||| ||||||| || |
Sbjct 1004 GTTCTACGTTTGGTTATAACCGTATTCCAAGCAACCCTTACTTCAACGGTGCTTCCCCGA 1063
Query 1396 ACCGTTACAACTCTCCAATTGGGTACAATAGAGGC-GACTCTGCTTACAACCCGAGCAAC 1454
||||||||| ||||||||| ||| |||||||| | || ||| ||||||| ||| |||
Sbjct 1064 ACCGTTACACCTCTCCAATCGGGCACAATAGAA-CTGAGTCTCCTTACAATTCGAACAAT 1122
Query 1455 AGAGACTTATGGGGAAACAGAAGTGATTCTTCTGGTCCCGGTTGGAACTTGGGA-GTTTC 1513
|||||||||||||||||||||| || || | |||||||||||||||||| | || ||
Sbjct 1123 AGAGACTTATGGGGAAACAGAACCGACACTGCAGGTCCCGGTTGGAACTTGA-ATGTCTC 1181
Query 1514 GGTTGGTAATAACAGAGGAAACTGGGGACTT--T-CTTCTG-TGGTG--AGC---GATAC 1564
| ||| || ||||||||||| ||||||||| | ||||| || || || ||||
Sbjct 1182 GAATGGAAACAACAGAGGAAATTGGGGACTTCCTTCTTCTTCTGCTGTTAGTAATGATAA 1241
Query 1565 CAATGGCTTTGGAAG-AACCTATGGGGCTGGTTCTGGACTTTC-TGGGTTATCATTCTCG 1622
||||||||||||||| ||| |||||| | ||||||||||||| | | | |||| |
Sbjct 1242 CAATGGCTTTGGAAGGAAC-TATGGGACAAGTTCTGGACTTTCCTCG-TCCCCATT-T-- 1296
Query 1623 GGTAACACAAACGGTTTTGATGGCTCTATAGGGGAATTGTATAGAGGCAGCTCAGTTTAT 1682
|| |||||||| || |||||||||||| |||| |||||| ||||||| ||
Sbjct 1297 ---AAT------GGTTTTGAAGGTTCTATAGGGGAACTGTACAGAGGCGGCTCAGTCTAC 1347
Query 1683 AGCGACTCAACGTGGCAGCAGTCA--ATGCCT-C-ATCATCAGCCTTCTAATGAGTTAGA 1738
|||||||||||||||||||| || | || | | ||| |||| ||||| | ||| ||||
Sbjct 1348 AGCGACTCAACGTGGCAGCAA-CAGCA-GC-TACCATC-TCAGTCTTCTCACGAGCTAGA 1403
Query 1739 CGGCTTGTCTCGCTCTTATGGCTT-TGGTATTGACAATGTAGGCTCAGACCCATCTGCCA 1797
| ||||||||| |||| || || || ||||||||||||||| |||||||||||||| |
Sbjct 1404 CAATTTGTCTCGCGCTTACGG-TTATGATATTGACAATGTAGGTTCAGACCCATCTGCAA 1462
Query 1798 ATG-CCTCAGAAGGTTACCCCCAAAACTACAATGTCGGAAATAGACAAAC-ACATAGAGG 1855
||| || ||||| |||| || ||||||||| |||||||||||||| | |||||||
Sbjct 1463 ATGACC-CAGAAACTTACAATGGAAGCTACAATGTTGGAAATAGACAAACTA-ATAGAGG 1520
Query 1856 TA 1857
||
Sbjct 1521 TA 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119226294375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5