BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492144
Length=2732
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26630.1 | Symbols: | DEK domain-containing chromatin assoc... 2802 0.0
> AT4G26630.1 | Symbols: | DEK domain-containing chromatin associated
protein | chr4:13430527-13435770 REVERSE LENGTH=2805
Length=2805
Score = 2802 bits (1517), Expect = 0.0
Identities = 1736/1837 (95%), Gaps = 33/1837 (2%)
Strand=Plus/Plus
Query 922 aagaggagagaaatgatgacaaagaagatgaaagagaagagagcaagGGTTCTAAAAAGC 981
||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 964 AAGAGGAGACAAATGATGATAAAGAAGATGAAAAAGAAGAGAGCAAGGGTTCTAAAAAGC 1023
Query 982 GTGGGAAAGGCAAGAGTTCTGGAGGAAAGGTTCGCGAGAGGACA-AAAAACGAGGAAGTA 1040
|||||||||| | |||||||||||||||||||||||||| || | |||| ||||||||||
Sbjct 1024 GTGGGAAAGGGACGAGTTCTGGAGGAAAGGTTCGCGAGAAGA-ATAAAACCGAGGAAGTA 1082
Query 1041 AAAAAGGAAGCAGAGCCTAGGACTCCTTTCTCTGATCGCCCTGTGCGTGAGCGGAAATCT 1100
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AAAAAGGATGCAGAGCCTAGGACTCCTTTCTCTGATCGCCCTGTGCGTGAGCGGAAATCT 1142
Query 1101 GTTGAGAGGCTTGTTGCATTGATTGATAAAGACTCTTCGAAAGAATTTCATATTGAAAAG 1160
||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||
Sbjct 1143 GTTGAGAGGCTTGTTGCATTGATTGATAAAGACTCCTCGAAAGAATTCCGTGTTGAAAAG 1202
Query 1161 GGGCGAGGTGCATATCTCAAAGACATTCCCAATGTTGCTAACAAGGTAACAAGGAAGAAG 1220
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 1203 GGGCGAGGTGCATATCTCAAAGATATTCCCAATGTTGCTAACAAGGTAATGAGGAAGAGG 1262
Query 1221 CCTGATGAAACTTTGAAGCTGCTGCACATGATTCTATTTGGTGGGAGGAGAGGGAAGGCT 1280
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1263 TCTGATGAAACTTTGAAGCTGCTTCACCCAATTCTATTTGGTGGGAGGAGAGGGAAGGCT 1322
Query 1281 GCTCAGATCAAGACAAACATATTGGGCTTCTCTGGTTTCGTTTGGCATGgagatgagaag 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GCTCAGATCAAGACAAACATATTGGGCTTCTCTGGTTTCGTTTGGCATGGAGATGAGAAG 1382
Query 1341 aaggcaaaagagaaagtaaaagaaaagcttgaaaaatgcatcaaagagaaaCTGTGGGAG 1400
|| |||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1383 AAAGCAAAAGAAAAAGTAAAAGAAAAGCTTGAGAAATGCACCAAAGAGAAACTGTGGGAG 1442
Query 1401 TTTTGTGATGTGTTGGACGTACATATTACCAAGGCTACAACAAAGAAGGAAGATATTATT 1460
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1443 TTTTGTGATGTGTTGGACATACACATTACCAAGGCTACAACAAAGAAGGAAGATATTATT 1502
Query 1461 ACAAAACTGATTGAGTTTTTGGAGAAACCTCATGTGAC-----A----A---GTGACACT 1508
||||||||| |||||||||||||||||||||||||||| | | ||||||||
Sbjct 1503 ACAAAACTGTTTGAGTTTTTGGAGAAACCTCATGTGACAGGTGATGTGACCGGTGACACT 1562
Query 1509 GCAGTTTCTGAGAAAGAGAAGTCAAGTAAGGGAGCAAAACGCAAGAGAACTCCCAAGCAA 1568
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1563 ACAGTTTCTGAGAAAGAGAAGTCAAGTAAGGGAGCAAAACGCAAGAGAACTCCCAAGAAA 1622
Query 1569 AGTTCACCTACAGCTGGGAGTTCATCCTCCAAACGATCAGCAAAGAG-CAAAAGAAAGTC 1627
| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1623 ACTTCACCTACAGCTGGGAGTTCATCCTCCAAACGATCAGCAAAGAGCCAAAA-AAAGTC 1681
Query 1628 TGAAGAAGCAGCAAAAGGTGTCAAAAAGAGTTTAGCTCATTCTGATGATGAGTCTgaag- 1686
|||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1682 TGAAGAAGCAACAAAAGTTGTCAAAAAGAGTTTAGCTCATTCTGATGATGAATCTGAAGA 1741
Query 1687 ag-gaga-aagaagaagaaaaacaagaggaggagaaggcagaagaggaagaagagaataa 1744
|| || | |||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1742 AGAGAAAGAAGAAGAAGAAAAACAAGAGGAGGAGAAGGCAGAAGAGAAAGAAGAGAAAAA 1801
Query 1745 agacgaggagaatgaaaaTGGCATTCCTGATAAATCTGAGGATGAGGCACCTCAGCCTTC 1804
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1802 AGAGGAGGAGAATGAAAATGGCATTCCTGATAAATCTGAGGATGAGGCGCCTCAGCCTTC 1861
Query 1805 TGAAAGCGAGGAGAAAGATGAATCTGAGGAGCATTCTGAAGAAGAAACTGCAAAGAAGAA 1864
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1862 TGAAAGCGAGGAGAAAGATGAATCTGAGGAGCATTCTGAAGAAGAAACTACAAAGAAGAA 1921
Query 1865 ACGTGGTTCTAGATTGTCAGCTGGGAAGAAAGAATCAGCAGGGAGAGCCAGAAACAAGAA 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922 ACGTGGTTCTAGATTGTCAGCTGGGAAGAAAGAATCAGCAGGGAGAGCCAGAAACAAGAA 1981
Query 1925 AGCAGCAGTCGCTGCAAAATCCAGTCCACCAGAGAAGGTTACACAGAAGCGATCATCAGC 1984
||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1982 AGCAGTGGTCGCTGCAAAATCCAGTCCACCAGAGAAGATTACACAGAAGCGGTCATCAGC 2041
Query 1985 CAAACGAAAGAAGACTGATGATGACAGTGATACAAGTCCAAAAGCCTCCTCTAAGAGGAA 2044
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2042 CAAACGAAAGAAGACTGATGATGACAGTGATACAAGTCCAAAGGCGTCCTCTAAGAGGAA 2101
Query 2045 GAAGACTGAAAAACTTACCAAGGCCTCCCCGGCTCCTTCAAAATCTGCATCAAAAGAGAA 2104
|||| ||||||| | || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 2102 GAAGTCTGAAAACCCTATCAAGGCCTCCCCGGCTCCTTCAAAGTCTGCATCAAAAGAGAA 2161
Query 2105 GCCAGTAAAAAGGGCTGGAAAAGGGAAAGACACGCCGAGTGATAAAGTGCTGAAAAATGC 2164
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2162 GCCAGTAAAAAGGGCTGGAAAAGGGAAAGACAAGCCGAGTGATAAAGTGCTGAAAAATGC 2221
Query 2165 TATCGTTGAGATCTTGAAAAGAGTGGACTTTAGCACGGCTACGTTCACGGACATCCTTAA 2224
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2222 AATCGTTGAGATCTTGAAAAGAGTGGACTTTAGTACGGCTACGTTCACGGACATCCTTAA 2281
Query 2225 AGAACTTGCTAAGGAGTTCACAGAAGATCTCACTCCAAGAAAGTCATCTATAAAGATGAT 2284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 AGAACTTGCTAAGGAGTTCACAGAAGATCTCACTCCAAGAAAGTCATCTATAAAGATGAT 2341
Query 2285 AATCCAAGAGGAGCTCACCAAATTAGCagaagaggaggaggaggaggaggagaagaaaga 2344
|||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 2342 AATCCAAGAGGAGCTCACCAAATTAGCAGATGAGGAGGAGGAGGAGGA--A-AAGAAAGA 2398
Query 2345 agaggatgcagagaaggaggaagcaggagg-t--ggtg------aggaggtgaaagCCTG 2395
||||||| |||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 2399 AGAGGATTCAGAGAAGGAGGAAGCAGGAGGGTCTGGTGGTGGTGAGGAGGTGAAAGCCTA 2458
Query 2396 AACTCCTTTCTGATCACATAGCACATATTGAGTCTCTCTCTCACAGGTCGTGTTGCCTAA 2455
||||||||||||||||||| ||||||||||||||||||| ||| | | ||||||||||
Sbjct 2459 AACTCCTTTCTGATCACATCGCACATATTGAGTCTCTCTGTCAGATA-C-TGTTGCCTAA 2516
Query 2456 TGCCTAGTAGTCATCTGGCAAATGTGTAAGTTAAATCTGTGGATGTAATATTTTGTTGTT 2515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 TGCCTAGTAGTCATCTGGCAAATGTGTAAGTTAAATCTGTGGATGTAATATTTTGTTGTT 2576
Query 2516 GGAGTCTGAACTGCGCAAAGCAGCTTTACTTTTGGTAGAGACAAGAGGAAGAAGCTGCAT 2575
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2577 GGAGTCTGAACTGCGTAAAGCAGCTTTACTTTTGGTAGAGACAAGAGGAAGAAGCTGCAT 2636
Query 2576 AGCCAAAGGATAGGTTGCTTGTATGTCTATAGCATTTAACATAAAAGCCTCCTTGGATTG 2635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2637 AGCCAAAGGATAGGTTGCTTGTATGTCTATAGCATTTAACATAAAAGCCTCCTTGGATTG 2696
Query 2636 TCTTTGATTTGTGAGGCTCCCTTTTCGATACATTCTCAAGCTTTCTGTAGTTTATGTCTT 2695
|||||||||||||||||||||||||||| ||||| ||||| ||||| | |||||||||||
Sbjct 2697 TCTTTGATTTGTGAGGCTCCCTTTTCGAGACATTGTCAAGGTTTCTTTTGTTTATGTCTT 2756
Query 2696 TTGGTTTGAAGGAGGCCAATGGTAATAAATGAATAAT 2732
|||||||||||||||||||||||||||||||||||||
Sbjct 2757 TTGGTTTGAAGGAGGCCAATGGTAATAAATGAATAAT 2793
Score = 1173 bits (635), Expect = 0.0
Identities = 891/1003 (89%), Gaps = 64/1003 (6%)
Strand=Plus/Plus
Query 1 TTCTCTCTCATaaaaaacgctatcgaaaagaaaaacaaaaGCTATTTGTTCTGTTTCGT- 59
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 TTCTCTCTCCTAAAAAACGCTATCAAAAAGAAAAACAAAAGCTATTTGTTCTGTTTTGTA 60
Query 60 --------A--AG---Ga--a-aaaaaaaaCTCAGTGCCGCCGAGTCTTGTGATACTCTG 103
| || || | |||||||||||||| |||||||||||||||||||
Sbjct 61 AGAAAAAAAGTAGTTAGAGGAGAAAAAAAACTCAGT---GCCGAGTCTTGTGATACTC-- 115
Query 104 AGGTGAGATTCACAAGAAGTGTTTTTGGTGGAAGGATCTACTG---T--TTTTTAATATG 158
|||| ||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 116 ---TGAG--CCACAAGAAGTGTTTTTGGTGGAAGGATCTACTGAACTGGTTTGTAATATG 170
Query 159 GGGGAAGATACAAAGGCAACCATTGAGCCAACCGCAAACAAGACTACTTCTCTTGAAAAG 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GGGGAAGATACAAAGGCAACCATTGAGCCAACCGCAAACAAGACTACTTCTCTTGAAAAG 230
Query 219 CCATCAGAGGCTATGGCTGGAAAAAAGGAGGAGGAGAATGCTGAGGGAAAGGAAACACAA 278
|||||||||||||||||||| | | |||||||||||| ||| ||||||||||||
Sbjct 231 CCATCAGAGGCTATGGCTGG-----A--A--AGGAGAATGCTGGGGGTAAGGAAACACAA 281
Query 279 GAACTTACAAAAGATGAGGATATTGCTGAACCAGAGAAAATGGAGATAGATGCTGAGATA 338
||||| | |||||||||||||| ||||| ||||| || ||||||||||||||| ||||
Sbjct 282 GAACTGGCGAAAGATGAGGATATGGCTGAGCCAGACAATATGGAGATAGATGCTCAGATT 341
Query 339 AAGAAAGATGATGAAAAATG-TGAGACCGAAGATAAAGAGTCAGAGGTTAAGAAAAAGGA 397
|||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||
Sbjct 342 AAGAAAGATGATGAAAAA-GCTGAGACGGAAGATAAAGAGTCAGAGGTTAAGAAAAATGA 400
Query 398 AGACAATGCTGAGACTCAAAAAATTGAAGATAAGGTTGAGGTCACCAAAGATGAGGGACA 457
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 401 AGACAATGCTGAGACTCAAAAAATGGAAGAGAAGGTTGAGGTCACCAAAGATGAGGGACA 460
Query 458 AGCAGAGGCTACCAACATGGATGAAGATGCAGATGGAAAGAAAGAGCAAACTGGTGATGG 517
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 461 AGCAGAGGCTACCAACATGGATGAAGATGCCGATGGAAAGAAAGAGCAAACTGATGATGG 520
Query 518 TATTTCAGTGGAAGATACCGTAATGAAGGAAAACGTGGAATCTAAAGACAATAACAATGC 577
| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 521 TGTTTCAGTGGAAGATACTGTAATGAAGGAAAACGTGGAATCTAAAGACAATAACTATGC 580
Query 578 CAAAGATGATGAAAA-G---C-AA-GAGACAAATAGTACTGAAGCAGACCACAAAAATGC 631
||||||||||||||| | | || |||||| ||| |||||| |||||||||||||| ||
Sbjct 581 CAAAGATGATGAAAAAGAGACCAAAGAGACAGATATTACTGAGGCAGACCACAAAAAAGC 640
Query 632 TGGGAAGGAGGACATAGAACATGAAGGTGAAAAAGCAAATGGAACAAAAGATGGCAATAC 691
|||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 641 TGGGAAGGAGGACATACAACATGAAGCTGACAAAGCAAATGGAACAAAAGATGGCAATAC 700
Query 692 AGGAGACATCAGAGAGGAAGGGACACTGGTAGATAAAGACAAAGGGACAGACAGGGATGA 751
||||||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 701 AGGAGACATCAAAGAGGAAGGGACACTGGTAGATGAAGACAAAGGGACAGATATGGATGA 760
Query 752 AAAAGTGGAGAATGTGGATGACAATgaaa-aagtggagaatgttgaagaaggaaaggaga 810
|||||||||||||| |||||| ||| ||| |||||||||||||||||| | |||| | |
Sbjct 761 AAAAGTGGAGAATGGGGATGAAAAT-AAACAAGTGGAGAATGTTGAAGGA--AAAGAA-A 816
Query 811 aggaagatacggaagaaaataaaacaaaggaagTTGAGGGGGCAAAGGCTGAGGTGGATG 870
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 817 AGGAAGATAAGGAAGAAAATAAAACAAAGGAAGTTGAGGCGGCAAAGGCTGAGGTGGATG 876
Query 871 AGGCAAAGGTAGAAGATGAAAAAGAAGGGAGtgatgataagaacaacaatgaaga-g-g- 927
|| ||||||||||||||||||||||||||||||| ||| ||||| |||||||| | | |
Sbjct 877 AGTCAAAGGTAGAAGATGAAAAAGAAGGGAGTGAGGATGAGAACGACAATGAAAAAGTGG 936
Query 928 agag-aaatgatgacaaag-aagatga-aagagaagagagcaa 967
|||| ||| |||| ||||| ||||||| || ||| |||| |||
Sbjct 937 AGAGCAAA-GATG-CAAAGGAAGATGAGAA-AGAGGAGA-CAA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135701580815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5