BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492146
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26620.1 | Symbols: | Sucrase/ferredoxin-like family protei... 2370 0.0
AT5G55900.1 | Symbols: | Sucrase/ferredoxin-like family protei... 752 0.0
> AT4G26620.1 | Symbols: | Sucrase/ferredoxin-like family protein
| chr4:13427411-13429964 REVERSE LENGTH=1607
Length=1607
Score = 2370 bits (1283), Expect = 0.0
Identities = 1424/1492 (95%), Gaps = 10/1492 (1%)
Strand=Plus/Plus
Query 1 CTTGTTCTTCTCCGTAGTTTCAGTTTCGATCTGTAAAGTGTCCAACTTCTGGTCGGATTT 60
||| ||| ||||||||||||||||||||||||||||||| || ||||| |||||| ||||
Sbjct 24 CTTCTTCGTCTCCGTAGTTTCAGTTTCGATCTGTAAAGTTTCAAACTTGTGGTCGAATTT 83
Query 61 GTAAATGGGAAGTGGCAGAGATAGAGACGACCCTTTATCCTTCACCAGCAATCCATCTTC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 84 TTAAATGGGAAGTGGAAGAGATAGAGACGACCCTTTATCCTTCACCAGCAATCCATCTAC 143
Query 121 GGCGTCGTCTCCGGTCACTGTATCTGACTATCTCGACACCTTTCTCGGCGAACCCACTTC 180
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 144 GGCGTCGTCTCCAGTCACTGTATCTGACTATCTCGACAACTTTCTCGGCGAACCCACTTC 203
Query 181 TCGCTCCGGGAGTTTTCAAAGCGAGAGCTTGCTCGGTGGA-------GAG--AGCATTAA 231
||||||||| |||||||||||||||||||| ||||||||| ||| ||||| ||
Sbjct 204 TCGCTCCGGTAGTTTTCAAAGCGAGAGCTTACTCGGTGGAGGCGGTGGAGAAAGCATCAA 263
Query 232 CGACGCTGATTTCGGATTCGCTCGTCCTGATTTCCGATCGGAGCAACTCGCTGGGACCGT 291
|||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 264 CGACGCTGATTTTGGATTCGCTCGTCCTGATTTCCGATCGGAACAACTAGCTGGAACCGT 323
Query 292 ACAGTTTTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCATCTGTTTGGCCCGCAAG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 ACAGTTTTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCATCTGTTTGGCCCGCAAG 383
Query 352 GATCGAGGCTGCTGAGTTCGATCGATTGCCTAGGCTACTCTCTGCGGCTGTATCGGCCAG 411
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 384 GATCGAGGCTGCTGAGTTCGATCGATTGCCTAGGCTACTCTCTGCTGCTGTATCGGCCAG 443
Query 412 GAAGAGTAGCATGAAGAAGGAGACTCGACTCACAATATGTGAGGGCCATGATGGGACAGA 471
||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 444 AAAGGGTAGCATGAAGAAGGAGACTCGACTCACAATATGTGAGGGGCATGATGGAACAGA 503
Query 472 GACATCCAATGGTGATGTACTTATTTTTCCTGATATGATCAGATACAGAAGATTGACTCA 531
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 504 GACATCCAATGGTGATGTACTTATTTTTCCTGATATGATCAGATACAGGAGATTGACTCA 563
Query 532 TTTTGATGTGGACACATTTGTGGAAGAGGTGCTTGTGAAGGATGGTGAATGGCTGCCTGG 591
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CTTTGATGTGGAGACCTTTGTGGAAGAGGTGCTTGTGAAGGATGGTGAATGGCTGCCTGG 623
Query 592 AAATCCTGAATTGCTGAAAGGCTCATATGTCTTTGTATGTTCCCATGGATCCCGAGACCG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 AAATCCTGAATTGCTGAAAGGCTCATATGTCTTTGTATGTTCCCATGGATCCCGAGACCG 683
Query 652 GCGATGTGGGGTTTGTGGGCCGTCGCTAGTTAGTAGATTCAGAGAAGAACTTGAGTTCCA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 GCGATGTGGGGTTTGTGGGCCGTCGCTAGTTAGTAGATTCAGAGAAGAACTTGAGTTCCA 743
Query 712 TGGTCTTCAAGGTAAAGTGTCAATTAGCCCATGTTCTCACATAGGTGGTCACAAATACGC 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TGGTCTTCAAGGTAAAGTGTCAATTAGCCCATGTTCTCACATAGGTGGTCACAAATACGC 803
Query 772 TGGGAATGTTATCATCTACAGATCAAACATCAACAGGGAAGTCACAGGACACTGGTATGG 831
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TGGGAATGTTATCATCTACCGATCAAACATCAACAGGGAAGTCACAGGACACTGGTATGG 863
Query 832 GTATGTGACCCCAGAAGATGTACCTATTCTCTTGGAGCAGCACATCAACAAAGGCGAGAT 891
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 864 GTATGTGACCCCAGAAGATGTACCTATTCTTTTGGAGCAGCACATCAACAAAGGCGAGAT 923
Query 892 TGTAGACCGGCTATGGAGGGGTGAAATGGGTCTATCAGAAGAAGATCAGAAGAAAACTCA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TGTAGACCGGCTATGGAGGGGTGAAATGGGTCTATCAGAAGAAGATCAGAAGAAAACTCA 983
Query 952 AGAAGGGCGGTTTCAGCTAAATGGTGCAGTCCATACGGTAAAGATCAATGGGAAAGTGAG 1011
||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 984 AGAAGGGCGATTTCAGCTAAATGGTACAGTCCATTCCGTAAAGATCAATGGGAAAGTGAG 1043
Query 1012 TCAAGAATCATCAGTCCACAGCGCCGATGTTTCTTGTTGCCAATCACGAGCTGCAGAACC 1071
|||||||||||| || |||| |||||||||||| |||||||| |||||||||||||||||
Sbjct 1044 TCAAGAATCATCGGTTCACAACGCCGATGTTTCCTGTTGCCAGTCACGAGCTGCAGAACC 1103
Query 1072 TAATGGTTGTTGCCAACAAAATGGGAACAGCTCTTCATGTTGTCAAGACGACACAACTCT 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1104 TAATGGTTGTTGCCAACAAAATGGGAACAGCTCTTCATGTTGTCAAGACGACACTACTCT 1163
Query 1132 AATGTTGTCTCTGGAAACATCAGAAGATAATCAACTTGAAAGTGAAAACAACACAGAGAA 1191
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1164 GATGTTGTCACTGGGAACATCAGAAGATAATCAACTTGAAAGTGAAAACAACACTGAGAA 1223
Query 1192 GCTTACACCAGGAAGAAAAATTGCAGAAAAGACTTTCTTTAGAATTAATAGTGACAAAGG 1251
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 GCTGACACCAGGAAGAAAAATTGCAGAAAAGACTTTCTTTAGAATTAATAGTGACAAAGG 1283
Query 1252 ATCTTCAACACGTAAGGTTTGCGGAATACCAACATGGCTAGAGAGCTGGGAGCGAGAAGA 1311
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1284 ATCTTCGACACGTAAGGTTTGCGGAATACCAACATGGTTAGAGAGCTGGGAGCGAGAAGA 1343
Query 1312 TACATATGCTGCCCTTGCTGTCGTTTGTGCTGCTGCTTCCGTGGTTGTTGCCTATACTTG 1371
||| |||||||| |||||||| || ||||||||||||||||||| |||||||||||||||
Sbjct 1344 TACTTATGCTGCTCTTGCTGTTGTCTGTGCTGCTGCTTCCGTGGCTGTTGCCTATACTTG 1403
Query 1372 CTACAAACAGTTGTAGGGAAGAAATTCGTATCCCTAAGATGATTGTGTATTGTGTTCTTA 1431
||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1404 CTACAAACAGTTGTAACGAAGAAATTTGTAGCCCTAAGATGATTGTGTATTGTGTTCTTA 1463
Query 1432 TAAGACATTGTGATTTTGTTTCAGCTTTCAAACTACATTTCCCCTTCG-TTT 1482
|||||||||||||||||||||| ||||||||||||||||| || |||| |||
Sbjct 1464 TAAGACATTGTGATTTTGTTTCTGCTTTCAAACTACATTTTCCTTTCGATTT 1515
> AT5G55900.1 | Symbols: | Sucrase/ferredoxin-like family protein
| chr5:22637531-22639761 FORWARD LENGTH=1482
Length=1482
Score = 752 bits (407), Expect = 0.0
Identities = 595/686 (87%), Gaps = 12/686 (2%)
Strand=Plus/Plus
Query 276 AACTCGCTGGGACCGTACAGTTTTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCAT 335
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 266 AACTCGCTGGGACTGTACAGTTCTACGAGAGGCATGTCTTCTTGTGCTACAAAAAACCAT 325
Query 336 CTGTTTGGCCCGCAAGGATCGAGGCTGCTGAGTTCGATCGATTGCCTAGGCTACTCTC-T 394
| |||||||| || |||||||| ||| ||||||| ||||| || || ||||| ||||| |
Sbjct 326 CCGTTTGGCCTGCGAGGATCGAAGCTTCTGAGTTTGATCGGTTACCGAGGCTTCTCTCCT 385
Query 395 GCGGCTGTATCGGCCAGGAAGAGTAGCATGAAGAAGGAGACTCGACTCACAATATGTGAG 454
|| | ||||||| ||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 386 CCGT-TATATCGGCGAGGAAGAGTAGTATGAAGAAAGAGACTTTACTCACAATATGTGAG 444
Query 455 GGCCATGATGGGACAGAGACATCCAATGGTGATGTACTTATTTTTCCTGATATGATCAGA 514
|| |||||||| |||||||||| ||||| ||||| || || ||||| ||||||||||||
Sbjct 445 GGACATGATGGTTCAGAGACATCAAATGGGGATGTTCTGATATTTCCAGATATGATCAGA 504
Query 515 TACAGAAGATTGACTCATTTTGATGTGGACACATTTGTGGAAGAGGTGCTTGTGAAGGAT 574
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 505 TACAGAAGGTTGACTCATTTTGATGTGGACACATTTGTTGAGGAGGTGCTTGTGAAGGGT 564
Query 575 GGTGAATGGCTGCCTGGAAATCCTGAAT-TGCTGAA-AGGCTCATATGTCTTTGTATGTT 632
| ||| ||| |||||||||||||||||| | || | || |||||||||||||||||||
Sbjct 565 GTTGAGTGGTTGCCTGGAAATCCTGAATCT-CTTAGTAGT-TCATATGTCTTTGTATGTT 622
Query 633 CCCATGGATCCCGAGACCGGCGATGTGGGGTTTGTGGGCCGTCGCTAGTTAGTAGATTCA 692
|||||||| |||||||||||||||||||||||||| || || ||||||||| ||||||
Sbjct 623 GTCATGGATCTCGAGACCGGCGATGTGGGGTTTGTGGACCTTCTCTAGTTAGTCGATTCA 682
Query 693 GAGAAGAACTTGAGTTCCA-TGGTCTTCAAGGTAAAGTGTCAATTAGCCCATGTTCTCAC 751
|||||||| |||| | | |||||||| |||| |||| ||| | ||||| |||||||||
Sbjct 683 GAGAAGAAATTGACT-CGTGTGGTCTTCGAGGTGAAGTTTCAGTCAGCCCTTGTTCTCAC 741
Query 752 ATAGGTGGTCACAAATACGCTGG-GAATGTTATCATCTACAGATCAAACATCAAC-AGGG 809
|| ||||||||||||||| |||| || |||||||||||| ||| ||| |||||| || |
Sbjct 742 ATTGGTGGTCACAAATACACTGGAGA-TGTTATCATCTATGGATTAAATATCAACCAGAG 800
Query 810 AAGTCACAGGACACTGGTATGGGTATGTGACCCCAGAAGATGTACCTATTCTCTTGGAGC 869
| |||||||||||||||||||| | |||||| | ||| ||||| ||| || | |||||||
Sbjct 801 A-GTCACAGGACACTGGTATGGATGTGTGACTCTAGAGGATGTTCCTCTTTTGTTGGAGC 859
Query 870 AGCACATCAACAAAGGCGAGATTGTAGACCGGCTATGGAGGGGTGAAATGGGTCTATCAG 929
| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 860 AACACATTAACAAAGGCGAAATTGTAGACCGGCTTTGGAGGGGTGAAATGGGTCTGCCAG 919
Query 930 AAGAAGATCAGAAGAAAACTCAAGAA 955
||||||||||||||||||||||||||
Sbjct 920 AAGAAGATCAGAAGAAAACTCAAGAA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5