BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492147
Length=1996
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26610.1 | Symbols: D6PKL1, AGC1-2 | D6 protein kinase like ... 3022 0.0
> AT4G26610.1 | Symbols: D6PKL1, AGC1-2 | D6 protein kinase like
1 | chr4:13424549-13427319 FORWARD LENGTH=2003
Length=2003
Score = 3022 bits (1636), Expect = 0.0
Identities = 1899/2018 (94%), Gaps = 50/2018 (2%)
Strand=Plus/Plus
Query 1 GCTTTGACCACCTCTTT-C-CTCATTTCATGGTAGACCCAActctctcatttcttactct 58
|||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 2 GCTTTGACCAACTCTTTCCTCTCTTTTCATGGTAGACCCAACTCTCTCATTTCTTACTCT 61
Query 59 ctgattcatctctctctctctctctTCATTTCCATGGAAGGAAGGTGATGAG-TTT-TC- 115
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 62 CTGATTCA--TCTCTCTCTCTCTCTTCATTTCCATGGAAGGAAGGTGATGAGCTTTCTCA 119
Query 116 -TCTTTAC-TGATTGATTATTGATGAAAGTCCTCTCCTTTCTTTTTGGTATCCCTTTTCT 173
||| | | | | ||||| || ||||||||| |||||||||| |||||||||||||||||
Sbjct 120 ATCTCT-CTTTACTGATTCTTAATGAAAGTCATCTCCTTTCTCTTTGGTATCCCTTTTCT 178
Query 174 TCTTTCTCTGCCTAATTCCTGACCAAAACAATTGTGTGACAAGATCTTTCAATCCCAAAG 233
|| |||||||| |||||||||||| ||| || | ||||||||||||||||||||| ||||
Sbjct 179 TC-TTCTCTGCTTAATTCCTGACC-AAA-AA-T-TGTGACAAGATCTTTCAATCCAAAAG 233
Query 234 CTAT-TTCGCTCAATGCAGACCTCAGATCACTA----ACGGGATACGTGACAGTAGTGGT 288
|||| | | | || | || ||||| |||||| ||||||| ||||||| |||||||
Sbjct 234 CTATATAC-ATTAA-G-AG--CTCAGGTCACTATCTGACGGGATCCGTGACAATAGTGGT 288
Query 289 GACCGGGGTCAAGAGCAGCTCCTTGAATCTTGAGTGTTAAGTAGATAGGT-A--T--CCA 343
|| || ||||| ||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 289 TACTGGAGTCAAAAGCAGCTCCTTGAATCTTGAGTGTTAAGTAGATAGGTAAGGTAACCG 348
Query 344 TTCATGGCCTCCAAGTCTGGTTCTGGAGTTCTCCCTGAAAATAATAAGGAAAAGGGCGAT 403
||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 349 TTCATGGCCTCGAAGTATGGTTCTGGAGTTCTCCCAGAAAATAAGAAGGAAAAGGGCGAT 408
Query 404 AAGGAAACCCCCGAAGCATCACTTTCTAATTCCAGTCAAAGTGTCTCAGTAAGCACTTTG 463
||||||||||| ||| | || ||| |||||||||||||||||||||||| |||||||
Sbjct 409 AAGGAAACCCCGGAA--A-CA---TCTTATTCCAGTCAAAGTGTCTCAGTAAACACTTTG 462
Query 464 GCAGATCAAGTATCTTCAACTTTGTCTTTTGCTCCAAGCAGCGACAGTAAAACTGGA-GT 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 463 GCAGATCAAGTATCTTCAACTTTGTCTTTTGCTCCAAGCAGCGACAGTAAAACTGGAGGT 522
Query 523 AGAAGTTAAATTTAATGAAAAGTCTGATCTCCCTGAGAGCGGGAAGAGTAACACATGTAG 582
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 523 -GAAGTTAAATTTAATGAAAAGTCTGA--T--C--AGAGCGGGAAGAGTAACACATGTAG 575
Query 583 ACCAAGCACAAGCAGTGATATCAGTGATGAGAGCACATGTAGCAGCTTAAGTAGCAACAA 642
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 576 ACCAAGCACAAGCAGTGATATCAGTGATGAGAGCACATGTAGCAGCTTTAGTGGTAACAA 635
Query 643 CAAGCCTCACAAGGCGAATGACGTGAGATGGGAAGCAATACAAGCTGTCCGAACGAAACA 702
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 636 CAAGCCTCACAAGGCGAATGACGTGAGATGGGAAGCAATTCAAGCTGTCCGAACGAAACA 695
Query 703 TGGTGTATTGGGCTTGAACCATTTTAGGCTCCTGAAGAGGTTAGGGTGTGGGGATATCGG 762
||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 696 TGGCGTATTGGGGTTGAACCATTTTAGGCTCTTGAAGAGGTTAGGGTGTGGGGATATCGG 755
Query 763 AACTGTTCATCTTGCTGAGTTGCACGGAACAAGGTGTTATTTTGCAATGAAGGTTATGGA 822
|||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 756 AACTGTCCACCTTGCTGAGTTGCACGGAACAAGGTGTTTTTTTGCAATGAAGGTTATGGA 815
Query 823 CAAAGGGGCTTTGGCTAGCCGTAAAAAGCTTCTTAGAGCTCAGACCGAGAGGGAGATATT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CAAAGGGGCTTTGGCTAGCCGTAAAAAGCTTCTTAGAGCTCAGACCGAGAGGGAGATATT 875
Query 883 GCAGTGTCTTGACCACCCTTTTCTCCCAACTTTGTATAGTCACTTCGAGACTGAGAAGTT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GCAGTGTCTTGACCACCCTTTTCTCCCAACTTTGTATAGTCACTTCGAGACTGAGAAGTT 935
Query 943 CTCATGTTTAGTTATGGAGTTCTGTCCTGGAGGTGACTTGCATACCCTTCGACAAAGACA 1002
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 CTCATGTTTGGTTATGGAGTTCTGTCCTGGAGGTGACTTGCATACCCTTCGACAAAGACA 995
Query 1003 GCCCGGGAAGCGATTCTCAGAACAAGCAGCAAAGTTTTATGTAGCGGAAGTACTTCTTGC 1062
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GCCCGGGAAGCGATTTTCAGAACAAGCAGCAAAGTTTTATGTAGCGGAAGTACTTCTTGC 1055
Query 1063 AATGGAATATCTTCATATGCTTGGCATCATATACCGCGATCTAAAGCCAGAGAATGTTCT 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AATGGAATATCTTCATATGCTTGGCATCATATACCGCGATCTAAAGCCAGAGAATGTTCT 1115
Query 1123 TGTTAGAGATGATGGACATGTGATGCTTTCTGACTTCGACCTCTCCTTGAGATGTACTGT 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TGTTAGAGATGATGGACATGTGATGCTTTCTGACTTCGACCTCTCCTTGAGATGTACTGT 1175
Query 1183 TAGCCCCACAGTTGTCAGATCAACTGTTCTTGCGTCTGAAGGTCAAAGGAACTCGGGTTA 1242
|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1176 TAGCCCCACAGTGGTCAGATCAACTGTTCTTGCGTCTGAAGGGCAAAAGAACTCGGGTTA 1235
Query 1243 TTGTGCGCAACCTGCTTGCATCCAACAGCCATCTTGCATTTCTGCTCCTACAACTTGCTT 1302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1236 TTGTGCGCAACCTGCTTGCATCCAACAGCCATCTTGCATTTCTGCTCCTACAACATGCTT 1295
Query 1303 TTCTCCACGTTTTTTCTCAAGTAAATCCAAGAAAGACAAGAAAATGAAAAACGAAACTGG 1362
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TTCTCCACGTTATTTCTCAAGTAAATCCAAGAAAGACAAGAAAATGAAAAACGAAACTGG 1355
Query 1363 AAACCAGGTAAGTCCGTTGCCCGAGCTCATTGCTGAGCCCACAAGTGCTCGCTCAATGTC 1422
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1356 AAACCAGGTAAGTCCATTGCCCGAGCTCGTTGCTGAGCCCACAAGTGCTCGCTCAATGTC 1415
Query 1423 ATTTGTGGGCACACATGAGTATTTAGCTCCTGAGATCATCAAAGGTGAAGGGCATGGGAG 1482
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 ATTTGTTGGCACACATGAGTATTTAGCTCCTGAGATCATCAAAGGTGAAGGGCATGGGAG 1475
Query 1483 TGCGGTTGATTGGTGGACTTTCGGGATCTTTCTGTATGAGCTATTGTTTGGTAAAACCCC 1542
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1476 TGCGGTTGATTGGTGGACTTTTGGGATCTTTTTGTATGAGCTATTGTTTGGTAAAACCCC 1535
Query 1543 GTTTAAAGGGTCAGGAAACCGAGCAACACTCTTCAACGTTGTGGGTCAGCCTCTGCGTTT 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 GTTTAAAGGGTCAGGAAACCGAGCAACACTCTTCAACGTTGTGGGTCAGCCTCTGCGTTT 1595
Query 1603 CCCTGAATCTCCAGTTGTCAGTTTTGCTGCTAGGGATTTGATTAGGAGTCTGCTTGTGAA 1662
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 CCCAGAATCTCCAGTTGTCAGTTTTGCTGCTAGGGATTTGATTAGGAGTCTGCTTGTGAA 1655
Query 1663 GGAGCCTCAGCATAGATTAGCGTATAAGCGTGGTGCAACCGAGATGAAGCAACATCCTTT 1722
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1656 AGAGCCTCAGCATAGATTAGCGTATAAGCGTGGTGCAACTGAGATGAAGCAACATCCTTT 1715
Query 1723 CTTCGAAGGAGTAAATTGGGCATTGGTTCGATGCGCTAGCCCACCAGAGATACCGAAACC 1782
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1716 CTTTGAAGGAGTGAATTGGGCATTGGTTCGATGCGCTAGCCCACCAGAGATACCAAAACC 1775
Query 1783 GGTTGAT-ATCGAAAGTGCACCTGCTACTCCAGCAGCAGCCACATCTACCAGTGTCAAGT 1841
||||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1776 GGTTGATTAT-GAGAGTGCGCCTGCTACTCCAGCAGCAGCCACATCTACTAGTGTCAAGT 1834
Query 1842 CTGACCAGAGTAATTATCTGGAGTTTGATTTCTTTTGACATCTTTCAGCAAGAAATCTGC 1901
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||
Sbjct 1835 CTGACCAGAGTAATTATCTGGAGTTCGATTTCTTTTGACATATTTCAGCAAGAAAACTGC 1894
Query 1902 CAATAGATT-ATCAAATTGTTCTTTGCAATCTGCAAATACGTTTAGTATTTTGAAA-TGT 1959
|| |||||| ||||| |||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1895 CATTAGATTTATCAATTTGTTCTTGGCGATCTGCAAATACGTTTAGTATTTTGAAAATGT 1954
Query 1960 G-TGAACTCTTTTTAAATCTTTGTCAACGCCATTCTTG 1996
| | |||||||||||| |||||||||| ||||||||||
Sbjct 1955 GAT-AACTCTTTTTAATTCTTTGTCAATGCCATTCTTG 1991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98895073650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5