BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492150
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26580.1 | Symbols: | RING/U-box superfamily protein | chr4... 1679 0.0
AT5G55970.1 | Symbols: | RING/U-box superfamily protein | chr5... 732 0.0
> AT4G26580.1 | Symbols: | RING/U-box superfamily protein | chr4:13411444-13413029
REVERSE LENGTH=1409
Length=1409
Score = 1679 bits (909), Expect = 0.0
Identities = 1094/1180 (93%), Gaps = 25/1180 (2%)
Strand=Plus/Plus
Query 1 ATATCCATCCATG----TGTTTTTACATGTACATTTAATTGCATA-TCTGAAGACTTTTC 55
||||||||||||| | ||||||||||||| |||||||||||| | | ||||||||||
Sbjct 1 ATATCCATCCATGTCTTTTTTTTTACATGTAC-TTTAATTGCATATTTTAAAGACTTTTC 59
Query 56 GTGACTTTCTAGCTCAAG-------C---TT-T-TTTGTTCTTGTTCAGGAGATCAAATC 103
|| |||| ||||||||| | || | |||| |||||||||||||||||||||
Sbjct 60 ATGGCTTTTTAGCTCAAGCTTTACTCTGTTTCTCTTTGCTCTTGTTCAGGAGATCAAATC 119
Query 104 ATCAA-ATCTCTCTCTGTTTCCGATATGAGTACCCGTTTTTCCTCTCAGTTGCAATCATC 162
| || | | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 A--AAGA-C-CTCTCTGTTTCCGATATGAGTACCCGTTATTCCTCTCAGTTGCAATCATC 175
Query 163 AGCCATTAACTCCATCACTGTCTCCTCATCTTCTTCCCTCGATTCCACGTC-ACGGGATG 221
||||||||||||||||||||||||||||||||||||| ||| ||||||| | || |||||
Sbjct 176 AGCCATTAACTCCATCACTGTCTCCTCATCTTCTTCCTTCGCTTCCACG-CAACTGGATG 234
Query 222 ATAACATTCACATGGCTCCGGAGAGCTCTCCATCTTCTACCTTCTTGATGAGACTTGCCA 281
|||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 235 ATAACACTCACACGGCTCCGGAGAGCTCTCCATCTTCTTCCTTCTTCATGAGACTTGCCA 294
Query 282 TGAGGGTATCTAGAGCAACGTGGTTCATTTTCTTGAGAAGAGTCTTTCATTACCAGAACG 341
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TGAGGGTATCTAGAGCAAGGTGGTTCATTTTCTTGAGAAGAGTCTTTCATTACCAGAACG 354
Query 342 CCTCAAGATCCGATCTTGGCACCAATCCTTTCAATTCTATCACTTGGATGATTTCAGAGC 401
||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 355 CCTCAAGATCCGATCTTGGCACCAATCCTTTCAATTCTATCGCTTGGATGGTATCAGAGC 414
Query 402 TCATCGCTTTACTTGTACAGATCACTGTCATAACATCCACACTAGCTTTGTCCAAGAACG 461
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 415 TCATCGCTTTACTTTTACAGATCACTGTGATAACATCCACACTAGCTTTGTCCAAAAACG 474
Query 462 AGAGGCCTGTTTGGCCGATGAGGCTATGGATCACCGGCTACAACGTCGGATGTCTGCTCA 521
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 475 AGAGGCCTGTTTGGCCGATGAGGTTATGGATCACTGGCTACAACGTTGGATGTCTGCTCA 534
Query 522 ATCTTATGCTATTATACGGTAGGTATCGTCAGCAACATACTAGCCAAGGAAATGCATTTA 581
|||||||| || |||||||| |||||||||||||| |||||||||| | |||||||||||
Sbjct 535 ATCTTATGTTACTATACGGTCGGTATCGTCAGCAAGATACTAGCCATGAAAATGCATTTA 594
Query 582 GCTTCGGCGATATTGAGCTGCAACAGAGAAGCAGAGAAGAGACCACCAGGTGCTCGCATT 641
|||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 595 GCTTCGGCGATATTGAGCAGCAACAAAGAAGCAGGGAAGAGACCACCAGGTGCTCGCATT 654
Query 642 TGATGAACAGATGCAGGACATCGCTGGAGCTATTCTTTGCGATATGGTTTGTGATAGGTA 701
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGATGAACAAATGCCGGACATCGCTGGAGCTATTCTTTGCGATATGGTTTGTGATAGGTA 714
Query 702 ATGTATGGGTTTTTGATTCTCGGTTCGGTTCTTTCCACTATGCTCCAATCCTTCATGTCC 761
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 ATGTATGGGTTTTTGATTCTCGGTTTGGTTCTTTCCACTATGCTCCAATCCTTCATGTCC 774
Query 762 TCTGCATCTCCCTGCTCGCTTGGAACGCTCTATGCTACTCCTTCCCGTTTCTTCTCTTCC 821
||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 775 TCTGCATCTCCCTACTCGCTTGGAACGCTCTCTGTTACTCCTTCCCATTTCTTCTCTTCC 834
Query 822 TCCTGCTCTGTTGTGTTGTGCCTCTCCTTAGTAGCTTCCTCGGCTACAACATGAACGTTG 881
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 835 TCCTGCTCTGTTGTGTTGTACCTCTCGTTAGTAGCTTCCTCGGCTACAACATGAACGTTG 894
Query 882 GATCTTCGGAAAAAGGAGCTTCAGATGACCAAATCTCCAGTCTCCCTAGTTGGAAATACA 941
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 895 GATCTTCGGAAAAAGGAGCTTCAGATGACCAGATCTCCAGTCTCCCAAGTTGGAAATACA 954
Query 942 AACTCATTGACGAAGCTTCAGATTCTGCTCAAGCAAGCAATGATCCGGAATGTTGTATAT 1001
|||||||||| ||| |||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 955 AACTCATTGATGAAACTTCTGATTCTTCTCAAGCAAACAATGATCCGGAATGTTGTATAT 1014
Query 1002 GTTTGGCAAAGTACAAAGAGAAAGAAGAAGTGAGAAAGCTTCCCTGTTCGCATAGGTTTC 1061
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1015 GTTTGGCAAAGTACAAAGAGAAAGAAGAAGTGAGAAAGCTTCCATGTTCGCATAGGTTTC 1074
Query 1062 ACCTCAAATGTGTAGATCAATGGCTTCGTATCATCTCGTGTTGTCCTCTCTGCAAACAAA 1121
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1075 ACCTCAAATGCGTAGATCAATGGCTTCGTATCATCTCGTGTTGTCCTCTTTGCAAACAAG 1134
Query 1122 ATCTTCCTAACTAAAAAATTAAAACGAGACACGAGACACA 1161
|||| ||||||| |||||| ||||| | ||| ||| ||||
Sbjct 1135 ATCTCCCTAACTGAAAAATCAAAACAATACATGAGTCACA 1174
> AT5G55970.1 | Symbols: | RING/U-box superfamily protein | chr5:22667906-22669545
FORWARD LENGTH=1378
Length=1378
Score = 732 bits (396), Expect = 0.0
Identities = 748/913 (82%), Gaps = 43/913 (5%)
Strand=Plus/Plus
Query 242 GAGAGCTCTCCATCTTCTACCTTCTT-GATGAGACTTGCCATGAGGGTATCTAGAGCAAC 300
||||| |||||||| | | | || || || || || || |||| |||||||||||| |
Sbjct 243 GAGAGGTCTCCATC-T-T-CGTT-TTATATAAGGCTGGCTATGAAGGTATCTAGAGCTA- 297
Query 301 G-TGGTTCATTTTCTTGAGAAGAGTCTTTCATTACCAGAACGCCTCAAGATCCGATCTTG 359
| |||||||| |||||||||||||| ||||| |||||||||| |||||||| || ||||
Sbjct 298 GATGGTTCATCTTCTTGAGAAGAGTGTTTCACTACCAGAACGGTTCAAGATCTGACCTTG 357
Query 360 GCACCAATCCTTTCAATTCTATCACTTGGATGATTTCAGAGCTCATCGCTTTACTTGTAC 419
| | |||||||||||||||| |||||||||||| || |||||||| ||| ||||||| |
Sbjct 358 GGTCTAATCCTTTCAATTCTAGCACTTGGATGATGTCTGAGCTCATTGCTCTACTTGTTC 417
Query 420 AGATCACTGTCATAACATCCACACTAGCTTTGTCC-AAGAACGAGAGGCCTGTTTGGCCG 478
|| ||||||| ||||||| ||| |||||| | ||| ||||| ||||| || |||||||
Sbjct 418 AGCTCACTGTGATAACATTCACTCTAGCTATCTCCAAAGAA-GAGAGACCAATTTGGCC- 475
Query 479 A-TGAGGCTATGGATCACCGGCTACAACGTCGGATGTCTGCTCAATCTTATGCTATTATA 537
| |||||||||||||||| || ||| | || |||||||| | ||||| ||||| |||||
Sbjct 476 AGTGAGGCTATGGATCACAGGATACGATGTGGGATGTCTTTTGAATCTCATGCTGTTATA 535
Query 538 CGGTAGGTATCGTCAGC-A-ACATACTAGCCAAGGAAATGCATTTAG--CTTCGGCGATA 593
||| |||||||||| | | |||| || ||||||||||| ||| | ||| ||||||
Sbjct 536 TGGTCGGTATCGTCAACTAGACAT--TAACCAAGGAAATGGGTTT-GTCCTT-GGCGATG 591
Query 594 TTGAGCTGCAACAGAGAAGCAGAGAAGAGACCACCAGGTGCTCGCATTTGATGAACAGAT 653
|||||| |||||||||| |||||||||| | || |||| ||| || |||||||||| ||
Sbjct 592 TTGAGCAGCAACAGAGAGGCAGAGAAGA-A--ACTAGGTCCTCTCACTTGATGAACAAAT 648
Query 654 GCAGGACATCGCTGGAGCTATTCTTTGCGATATGGTTTGTGATAGGTAATGTATGGGTTT 713
|||| || ||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| |
Sbjct 649 GCAGAACGTCGCTAGAGCTTTTCTTTGCGATTTGGTTTGTGATTGGAAATGTTTGGGTGT 708
Query 714 TTGATTCTCGGTTCGGTTCTTTCCACTATGCT-CCAATCCTTCATGTCCTCTGCATCTCC 772
| |||||| |||| |||||||||||| ||||| |||| ||||| || |||||| ||||
Sbjct 709 TCGATTCTAGGTTTGGTTCTTTCCACCATGCTCCCAA-GCTTCACGTTCTCTGCGTCTCT 767
Query 773 CTGCTCGCTTGGAACGCTCTATGCTACTCC-TTCCCGTTTCTTCTCTTCCTCCTGCTCTG 831
|| | |||||||||||| | ||||| ||| ||||| ||||||||||||||| | |||||
Sbjct 768 CTTTTAGCTTGGAACGCTATCTGCTATTCCTTTCCC-TTTCTTCTCTTCCTCTTCCTCTG 826
Query 832 TTGTGTTGTGCCTCTCCTTAGTAGCTTCCTCGGCTACAACATGAACGTTGGATCTTCGGA 891
||| |||| |||||| | |||||| |||| || || ||||||||| | ||||| || ||
Sbjct 827 TTGCCTTGTTCCTCTCATAAGTAGCCTCCTTGGATATAACATGAACATGGGATCCTCAGA 886
Query 892 AAAAGGAGCTTCAGATGACCAAATCTCCAGTCTCCCTAGTTGGAAATACAAACTCATTGA 951
| || ||| ||||||||||||||||| ||||||||||| ||||||| ||||| || ||
Sbjct 887 CAGAGCAGCATCAGATGACCAAATCTCTAGTCTCCCTAGCTGGAAATTCAAACGAATCGA 946
Query 952 CGA-A--GCTTCAGATTCTG-CTC--A---AGC-A----AGC-AATGATCCGGAATGTTG 996
||| | ||||| ||||||| || | ||| | | | ||||||| || |||||
Sbjct 947 CGATAGTGCTTCTGATTCTGATTCAGATTCAGCTACTGTAACTGATGATCCAGAGTGTTG 1006
Query 997 TATATGTTTGGCAAAGTACAAAGAGAAAGAAGAAGTGAGAAAGCTTCCCTGTTCGCATAG 1056
|||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||||
Sbjct 1007 TATATGTTTGGCAAAGTATAAAGACAAAGAAGAAGTAAGGAAGCTTCCATGTTCACATAA 1066
Query 1057 GTTTCACCTCAAA-TGTGTAGATCAATGGCTTCGTATCATCTCGTGTTGTCCTCTCTGCA 1115
|||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1067 GTTTCA-CTCAAAGTGTGTAGATCAATGGCTTCGTATCATCTCTTGTTGTCCTCTCTGCA 1125
Query 1116 AACAAAATCTTCC 1128
||||| |||||||
Sbjct 1126 AACAAGATCTTCC 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5