BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492153
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26555.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 1066 0.0
> AT4G26555.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr4:13404465-13406245 REVERSE LENGTH=848
Length=848
Score = 1066 bits (577), Expect = 0.0
Identities = 740/812 (91%), Gaps = 38/812 (5%)
Strand=Plus/Plus
Query 1 TCTCTCACTCTTTTTCTTATCCACTATCC--------A-AAGAAGAAGACTATTGACGAC 51
||||||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 1 TCTCTCACTCTTTTTCTTATCCACTATCCATAGAAGAAGAAGAAGAAGACTGTTGACGAC 60
Query 52 GA---C---GGCGATGGCTATGGAGATTTCTCATCGTTTCTTTGGATCATCCATGGCCTT 105
|| | ||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct 61 GACGGCGATGGCGATGGCTATGGAGATTTCTCTTCCTTTCGTTGGATCATCCATGGCCTT 120
Query 106 AAGCGTGGGAAAATCTAGGAACGGCGTTTCTGGGATTAGTCGTGTTGGATTATCTTCGGT 165
||||| ||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||
Sbjct 121 AAGCGCGGGAAAATCAAGGAACAGCGTTTCTAGGATTAGTCGTGTTGGATTCTCTTCGGT 180
Query 166 TTCGGCCGTACATGTACCCAGAAGGATGTTTATGCAGCTCGT-TGGGTTTGGTTCGGTCT 224
||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 181 CTCGGCTGTACATGTACCCAGAAGGATGTTTATGCAGCT-GTCTGGATTTGGTTCGGTCT 239
Query 225 TGACGCTTCTGGATTTTCCTGGTTTAGCGGCGCCGGTTCCTCAAATGAAGGAACCTCAAG 284
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||
Sbjct 240 TGACGCTTCTGGATTTTCCTAGTTTAGCGGCGCCGGTTCCTCAGATGAAGGAACCTGAAG 299
Query 285 TTATCAGGACTTTGAAGCTCCCGAGTGGCGTGAGGTTTCAAGAGATAATTGAAGGGGAAG 344
| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 300 TGATCAGGACATTGAAACTCCCGAGTGGCGTGAGGTATCAAGAGATAATTGAAGGTGAAG 359
Query 345 GACGAGAAGCTCATGAAGGGGACCTGGTCGAACTAAACTATGTGTGTCGGCGTGCAAATG 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GACGAGAAGCTCATGAAGGGGACCTGGTCGAACTAAACTATGTGTGTCGGCGTGCAAATG 419
Query 405 GATATTTCGTTCATAGCACGGTGGACCAATTCAGTGGTGAAAGCTCTCCTGTCAAACTTA 464
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GATATTTCGTTCATAGCACGGTGGATCAATTCAGTGGTGAAAGCTCTCCTGTCAAACTTA 479
Query 465 TTCTTGATGAAAATGACGTAATTGAGGGCTTGAAGGAAGTCTTGGTGGGCATGAAAGCCG 524
|||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 480 TTCTCGATGAAAACGACGTAATTGAGGGCTTGAAAGAAGTCTTGGTGGGCATGAAAGCTG 539
Query 525 GGGGGAAGCGAAGAGCACTGATACCTCCATCAGTAGGGTACATAAACGAGACATTGAAGC 584
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGGGAAGCGTAGGGCACTGATACCTCCATCAGTAGGGTACATAAACGAGACATTGAAGC 599
Query 585 CAATCCCCGAGGAGTTTGGACCACGACGCAGCCTTCTATCGCATGCGAACGAGCCTCTGG 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAATCCCCGAGGAGTTTGGACCACGACGCAGCCTTCTATCGCATGCGAACGAGCCTCTGG 659
Query 645 TCTTTGAAATCCAGCTCTTGAAAGTATTATGATATTT-T---GT---T-A-----A-TGA 690
||||||||||||||||||||||||||||||||||||| | || | | | |||
Sbjct 660 TCTTTGAAATCCAGCTCTTGAAAGTATTATGATATTTGTCCTGTCACTGACTGTTAATGA 719
Query 691 AGTATTTTGGCTGTGAGCT-AGTTTAATTTCTATTGTAAATCTGTAACAACAACTACATG 749
||||||||||||||||| | | |||| |||||||||||||||||||||||||||| | ||
Sbjct 720 AGTATTTTGGCTGTGAGATTA-TTTATTTTCTATTGTAAATCTGTAACAACAACTGCTTG 778
Query 750 GAACTG--T--CTT-ATGAGTTCTGCTATAAG 776
||||| | ||| |||||||||||| ||||
Sbjct 779 GAACTACATATCTTGATGAGTTCTGCTTTAAG 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37725844397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5