BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492161
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26500.1 | Symbols: EMB1374, CPSUFE, ATSUFE, SUFE1 | chlorop... 1929 0.0
> AT4G26500.1 | Symbols: EMB1374, CPSUFE, ATSUFE, SUFE1 | chloroplast
sulfur E | chr4:13382198-13383641 REVERSE LENGTH=1444
Length=1444
Score = 1929 bits (1044), Expect = 0.0
Identities = 1285/1398 (92%), Gaps = 29/1398 (2%)
Strand=Plus/Plus
Query 1 CTCTCTCGAAGTTTCAAGTT--CGACTATGGCAGCAGCGATGTCTTCTTCTTGTTGCGCT 58
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 44 CTCTCTCGAAGTTTCAAGTTCGCGACTATGGCAGCAGCGATGTCTTCTTCTTGTTGCGCT 103
Query 59 TCTTCACTTCGTCTAATCCCATTCAAACGGACCTTGTTTTCTTCTATCCATTATCCTGCC 118
|| || |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 104 TCCTCGCTTCGTTTAATCCCATTCAAACGGACCTTGTTTTCTTCAATCCATTATCCGGCC 163
Query 119 AAAGCCCTGATTCTCCGACCACTAAAACCGTCGGAAATTCCTTCCTTTCGCCGGACGATC 178
||| |||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 164 AAAACCCTTCTTCTACGACCACTAAAACCGTCGGAAGTTCCTTCCTTTCGCCGGACGATC 223
Query 179 ATCACGTTCCAGAAAATTTCAACCGGAATTGTTCCTCCTTCATCGGCTTCATCATCATCT 238
||||| |||||||||||||||||||| ||||||||||| ||||||| | |||||||||
Sbjct 224 ATCACTTTCCAGAAAATTTCAACCGGGATTGTTCCTCCACCATCGGC-T--TCATCATCT 280
Query 239 CCGTCTAGCTCTGGAGACCTTCAACCAATCGAAGAGCTGCCTCCGAAGCTACAAGAGATC 298
||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 281 CCGTCGAGCTATGGAGACCTTCAACCAATCGAAGAGCTTCCACCGAAGCTACAAGAGATC 340
Query 299 GTCAAGCTTTTCCAATCGGTACAAGAGCCAAAGGCTAAATACGAGCAGCTTCTGTTCTAC 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 341 GTCAAGCTTTTCCAATCGGTACAAGAGCCAAAGGCTAAATACGAGCAGCTTATGTTCTAC 400
Query 359 GGGAAGAATCTGAAACCACTCGATTCTCAATTCAAGACGAGGGAGAATAAAGTAGAAGGA 418
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GGGAAGAATCTGACACCTCTCGATTCTCAATTCAAGACGAGGGAGAATAAAGTAGAAGGA 460
Query 419 TGTGTTTCTCAGGTTTGGGTTAGGGCTTTCTTCGATGAGCAACGTAATGTTGTGTATGAA 478
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 461 TGTGTTTCTCAGGTTTGGGTTAGGGCTTTCTTTGATGAGGAACGTAATGTTGTGTATGAA 520
Query 479 GCTGATTCTGATTCGCTTCTCACTAAAGGTTTAGCTGCTCTATTAGTCCAGGGTTTATCT 538
||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 521 GCTGATTCTGATTCGGTTCTCACTAAAGGGTTAGCTGCTCTATTAGTCAAGGGTTTATCT 580
Query 539 GGAAGACCTGTGCCTGAGATTTTGAGGATTTCACCTGATTTCGCTCTTCTTCTCGGTTTG 598
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 581 GGAAGACCTGTCCCTGAGATTTTGAGGATAACACCTGATTTCGCTGTTCTTCTCGGGTTG 640
Query 599 CAGCAGAGTCTGACTCCTTCTCGAAGCAATGGATTCCTTAATATGCTTAAGTTGATGCAG 658
|||||||||||| |||||||| ||| ||||||||| ||||||||||||||| ||||||||
Sbjct 641 CAGCAGAGTCTGTCTCCTTCTAGAAACAATGGATTACTTAATATGCTTAAGCTGATGCAG 700
Query 659 AAAAAGGCTCTTCATTTGGAAGTCAAAGGTGTGGAAGATTCAAGTTC---AGA-A-T-C- 711
||||||||||||||||||||||||||||||| ||||||||||||||| ||| | | |
Sbjct 701 AAAAAGGCTCTTCATTTGGAAGTCAAAGGTGAGGAAGATTCAAGTTCTGGAGAGAGTTCA 760
Query 712 ----C-AGCTTTGTGTCTACTCCTGAGATTGAGGACGAAGCTAGTGTTCCCGAGGTGGAT 766
| ||||||||||||| |||||||| | |||||||||||| |||||| |||||||||
Sbjct 761 GAATCCAGCTTTGTGTCTATTCCTGAGACTAAGGACGAAGCTAATGTTCCGGAGGTGGAT 820
Query 767 TCGGAGTCCAAACCTGGTCTAGTTGAGGATTTGGGAACAGAAAAGATTGATGATTCTGAT 826
| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TTGGAGTCTAAACCTGATCTAGTTGAGGATTTGGGAACAGAAAAGATTGATGATTCTGAG 880
Query 827 AGTGGGTCTAATGGTGTTGCTTTAGGGAGTAGAGGGATGAGGATAAGAGAGAGATTGGAG 886
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 881 AGTGGGTCAAATGTTGTTGCTTTAGGGAGTAGAGGGATGAGGATAAGAGAGAAATTGGAG 940
Query 887 GAGGAGTTAAATCCTGTTGAGTTGGAAGTTGAAGATGTTTCTTACCAGCACGCAGGACAT 946
||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 941 AAGGAGCTAGATCCTGTTGAGTTAGAAGTTGAAGATGTTTCTTACCAGCACGCAGGACAT 1000
Query 947 GCCGCTGTTAGAGGTAGTGCTGGTGATAATGGGGAAACACATTTCAACTTGCGAATCGTT 1006
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1001 GCCGCTGTTAGAGGTAGTGCTGGTGATGATGGGGAAACACATTTCAACTTGCGAATCGTT 1060
Query 1007 TCGGATGTTTTCCAAGGTAAAAGCTTGGTCAAGAGACATAGGCTGATATATGACTTGTTG 1066
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TCGGATGCTTTCCAAGGTAAAAGCTTGGTCAAGAGACATAGGCTGATATATGACTTGTTG 1120
Query 1067 CAAGAGGAGTTGAAGAGCGGCTTACATGCTCTCTCTATCGTGGCAAAGACTCCTGCTGAG 1126
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1121 CAAGATGAGTTGAAGAGCGGGTTACATGCTCTCTCTATTGTGGCAAAGACTCCTGCTGAG 1180
Query 1127 GTTTGAGGGTGTAGCAATGGAAGGAGTCAGGTCCAGATTCTTTTACCTCTTTAGGTTCAT 1186
||||||||||||| || |||||| |||||||||| ||||||||||| ||||| ||| |||
Sbjct 1181 GTTTGAGGGTGTAACATTGGAAGAAGTCAGGTCCTGATTCTTTTACTTCTTTTGGTCCAT 1240
Query 1187 TTGCTTTTGGATTTTGTTCTCTGGACCTTTTAATAATGTTGAGAGCTTGATCAGGATCAT 1246
||||||| |||| |||||||||||||||| |||||||||| |||||| ||||||||| |
Sbjct 1241 TTGCTTT-GGATATTGTTCTCTGGACCTTCTAATAATGTTAAGAGCTCGATCAGGATTGT 1299
Query 1247 GTTTAATGAGAGATTGCTATTGAAGGA-ATATATAATGTTTTCACC----GC-A--TGAT 1298
||| |||||||||| | |||||||||| ||| ||||||||||| || || | ||||
Sbjct 1300 GTTAAATGAGAGATAGATATTGAAGGATATAAATAATGTTTTCGCCAATCGCCACATGAT 1359
Query 1299 TCGCCATTTGCAAACTGCATT-CCATTCATCTTATTAGCGTCAAGGTCTTTTT-GCTTTA 1356
|| |||||| ||||||| ||| || || ||||||| || |||||||||||||| | |||
Sbjct 1360 TCACCATTTTCAAACTG-ATTTCCCTTTATCTTATGAGGGTCAAGGTCTTTTTTGTTTTG 1418
Query 1357 ATATGGTTTCCTGATATT 1374
||||||||||||||||||
Sbjct 1419 ATATGGTTTCCTGATATT 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5