BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492164
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26480.1 | Symbols: | RNA-binding KH domain-containing prot... 1535 0.0
AT5G56140.1 | Symbols: | RNA-binding KH domain-containing prot... 976 0.0
AT4G26485.1 | Symbols: | Domain of unknown function (DUF2431) ... 761 0.0
AT4G26483.1 | Symbols: | nicotianamine synthases | chr4:133766... 178 2e-43
> AT4G26480.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:13372422-13375963 REVERSE LENGTH=1560
Length=1560
Score = 1535 bits (831), Expect = 0.0
Identities = 867/885 (98%), Gaps = 0/885 (0%)
Strand=Plus/Plus
Query 814 GGAGGCggtggtggtggtggtggtggGAGATTTGTGCCGTATCCGCCGCCTCTTTCTGTG 873
||||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 213 GGAGGAGGTGGTGGTAGTGGTGGTGGGAGATTTGTGACGTATCCGCCGCCTCTATCTGTG 272
Query 874 CCTCCGTCGGCTCCTCAGTCACCTAACTTCTCTGGTGGTCTCCGATCACAGCCTTCTTTC 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 CCTCCGTCGGCTCCTCAGTCACCTAACTTCTCTGGTGGTCTCCGATCACAGCCTTCTTTC 332
Query 934 CTCGTTGAGCAAGAGAAGTATCTTTCTGAGTTACTTGCAGAGCGTCACAAGCTTACTCCA 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CTCGTTGAGCAAGAGAAGTATCTTTCTGAGTTACTTGCAGAGCGTCACAAGCTTACTCCA 392
Query 994 TTTTTGCCTGTGCTTCCACATGTTTGCCGGCTCATGAACCAAGAAATTTTGCGTGTAACC 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 TTTTTGCCTGTGCTTCCACATGTTTGCCGGCTCATGAACCAAGAAATTTTGCGTGTAACC 452
Query 1054 ACGCTGTTGGAGAATGCCTTAAGTCAGAGTAGGTTTGATCACCCTAGCCCTCTGGCTTCT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 ACGCTGTTGGAGAATGCCTTAAGTCAGAGTAGGTTTGATCACCCTAGCCCTCTGGCTTCT 512
Query 1114 GGAGGGATATTTCAGAATGCAAGAGCTGACATGAACGGATGGGCCTCACAATTTCCATCA 1173
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GGAGGGATATTTCAGAATTCAAGAGCTGACATGAACGGATGGGCCTCACAATTTCCATCA 572
Query 1174 GAAAGATCTGTTTCATCATCCCCAGCACCAAATTGGCTTAACTCTCCTGGTAGCTCGTCC 1233
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 GAAAGATCGGTTTCATCATCCCCAGCACCAAATTGGCTTAACTCTCCTGGTAGCTCGTCC 632
Query 1234 GGTCTCATTGTCAAGCGAACAATCAGGGTGGATATTCCAGTTGACAAATACCCAAACTAC 1293
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 633 GGTCTCATCGTCAAGCGAACAATAAGGGTGGATATTCCAGTCGACAAATACCCAAACTAC 692
Query 1294 AATTTTGTCGGTCGCCTCTTGGGTCCTAGAGGAAACTCCCTCAAACGAGTTGAAGCGAGT 1353
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 AATTTTGTCGGTCGTCTCTTGGGTCCTAGAGGAAACTCCCTCAAACGAGTTGAAGCGAGT 752
Query 1354 ACTGATTGTCGTGTTCTAATAAGGGGTAGAGGCAGCATTAAAGATCCGATTAAGGAGGAA 1413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 ACTGATTGTCGTGTTCTAATAAGGGGTAGAGGCAGCATTAAAGATCCGATTAAGGAGGAT 812
Query 1414 ATGATGAGAGGGAAACCTGGTTATGAGCACCTCAATGAACCACTCCACATCTTAGTCGAG 1473
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 ATGATGAGAGGTAAACCTGGTTATGAGCACCTCAATGAACCACTCCACATCTTAGTCGAG 872
Query 1474 GCAGAATTACCCATTGAAATAGTGGACGCACGTCTCATGCAAGCCCGTGAAATACTCGAC 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GCAGAATTACCCATTGAAATAGTGGACGCACGTCTCATGCAAGCCCGTGAAATACTCGAC 932
Query 1534 GATCTACTTACTCCCGTGGAGGAAACCCATGATTTCTACAAGAAACAACAACTACGGGAA 1593
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 933 GATCTACTTACTCCCGTGGAGGAAACCCATGATTTCTACAAGAAACAACAGCTACGGGAA 992
Query 1594 TTGGCGCTTCTTAATGGTAGTCTTCGAGAAGAAGGATCTCCAATGTCTGGTTCCATCTCA 1653
||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TTGGCCCTTCTCAACGGCAGTCTTCGAGAAGAAGGATCTCCAATGTCTGGTTCCATCTCA 1052
Query 1654 CCTTACAATAGCCTCGGGATGAAGAGAGCTAAGACAAGGGGCTAA 1698
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1053 CCTTACAATAGCCTCGGCATGAAGAGAGCTAAGACAAGGGGCTAA 1097
Score = 58.4 bits (31), Expect = 2e-07
Identities = 43/49 (88%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 767 AAGAAGAAGTAGCCGTCGTGGTGATGATGATGATGACGTCACTTGGTGG 815
||||||||| || || | |||||||||||||||||||||||||||||
Sbjct 148 AAGAAGAAGAAGTAGTAGCCGTGATGATGATGATGACGTCACTTGGTGG 196
> AT5G56140.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:22725369-22728343 FORWARD LENGTH=1452
Length=1452
Score = 976 bits (528), Expect = 0.0
Identities = 766/881 (87%), Gaps = 16/881 (2%)
Strand=Plus/Plus
Query 822 tggtggtggtggtggtggGAGATTTGTGCCGTATCCGCCGCCTCTTTCTGTGCCTCCGTC 881
||||||||| || || ||||| ||| || ||||| || || ||||||| |||||||| ||
Sbjct 156 TGGTGGTGGCGGCGGAGGGAGGTTTATGACGTATTCGTCGTCTCTTTCGGTGCCTCCTTC 215
Query 882 GGCTCCTCAGTCACCTAACTT-CTCTGGTGGTCTCCGATCACAGCCTTCTTTCCTCGTTG 940
||||||||||| ||||| || ||| |||||||||||||||||| ||||| || ||||||
Sbjct 216 TGCTCCTCAGTCTCCTAA-TTACTCCGGTGGTCTCCGATCACAGTCTTCTGTCTTCGTTG 274
Query 941 AGCAAGAGAAGTATCTTTCTGAGTTACTTGCAGAGCGTCACAAGCTTACTCCATTTTTGC 1000
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 275 AGCAAGAGAAGTATCTTTCAGAGTTACTTGCAGAGCGTCATAAGCTTACTCCATTCCTGC 334
Query 1001 CTGTGCTTCCACATG--TTTGCCGGCTCA-TGAACCAAGAAATTTTGCGTGTAACCACGC 1057
||||||||||||||| ||| ||||| | | |||||||||||||||||||||||||| |
Sbjct 335 CTGTGCTTCCACATGCATTT--CGGCT-ACTAAACCAAGAAATTTTGCGTGTAACCACAC 391
Query 1058 TGTTGGAGAATGC--C----TTAAGTCAGAGTAGGTTTGATCACCCTAGCCCTCTGGCTT 1111
||||||||||||| | |||||||||||| || |||| |||||||||||||||||||
Sbjct 392 TGTTGGAGAATGCTACAGTTTTAAGTCAGAGTGGGCTTGACCACCCTAGCCCTCTGGCTT 451
Query 1112 CTGGAGGGATATTTCAGAATGCAAGAGCTGACATGAACGGATGGGCCTCACAATTTCCAT 1171
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 452 CTGGAGGGATATTTCAGAATGCAAGAGCTGACATGAATGGATGGGCCTCCCAGTTTCCAT 511
Query 1172 CAGAAAGATCTGTTTCATCATCCCCAGCACCAAATTGGCTTAACTCTCCTGGTAGCTCGT 1231
|||||||||||||| ||||||| || | |||||||||||||||||| |||||||| ||||
Sbjct 512 CAGAAAGATCTGTTCCATCATCTCCGGGACCAAATTGGCTTAACTCACCTGGTAGTTCGT 571
Query 1232 CCGGTCTCATTGTCAAGCGAACAATCAGGGTGGATATTCCAGTTGACAAATACCCAAACT 1291
|||||||||| | |||||| ||||||||||| ||||||||||| ||||| || || || |
Sbjct 572 CCGGTCTCATCGCCAAGCGTACAATCAGGGTCGATATTCCAGTCGACAATTATCCGAATT 631
Query 1292 ACAATTTTGTCGGTCGCCTCTTGGGTCCTAGAGGAAACTCCCTCAAACGAGTTGAAGCGA 1351
||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||| |
Sbjct 632 TCAATTTTGTTGGTCGCCTCCTGGGTCCTAGAGGAAACTCCCTGAAGCGAGTTGAAGCAA 691
Query 1352 GTACTGATTGTCGTGTTCTAATAAGGGGTAGAGGCAGCATTAAAGATCCGATTAAGGAGG 1411
|||||||||| |||||||| ||||| || ||||| || || |||||||| ||||||||||
Sbjct 692 GTACTGATTGCCGTGTTCTTATAAGAGGAAGAGGAAGTATAAAAGATCCAATTAAGGAGG 751
Query 1412 AAATGATGAGAGGGAAACCTGGTTATGAGCACCTCAATGAACCACTCCACATCTTAGTCG 1471
||||||||||||| ||||| || || |||||||| ||||||||||| || |||||||| |
Sbjct 752 AAATGATGAGAGGAAAACCGGGATACGAGCACCTAAATGAACCACTTCATATCTTAGTGG 811
Query 1472 AGGCAGAATTACCCATTGAAATAGTGGACGCACGTCTCATGCAAGCCCGTGAAATACTCG 1531
| ||||||||||| ||||||||||| || ||||| ||||||||||| || |||||||| |
Sbjct 812 AAGCAGAATTACCGATTGAAATAGTCGATGCACGGCTCATGCAAGCTCGGGAAATACTTG 871
Query 1532 ACGATCTACTTACTCCCGTGGAGGAAACCCATGATTTCTACAAGAAACAACAACTACGGG 1591
||||||| |||||||| ||||||||||||||||| | |||||||||||||| || || |
Sbjct 872 ACGATCTTCTTACTCCTATGGAGGAAACCCATGATATGTACAAGAAACAACAGCTGCGCG 931
Query 1592 AATTGGCGCTT-CTTAATGGTAGTCTTCGAGAAGAAGGATCTCCAATGTCTGGTTCCATC 1650
| | || || || ||||| | |||||| |||||||||||||||||||| ||||| |
Sbjct 932 AGCTAGCA-TTGCTCAATGGAACTCTTCGTGAAGAAGGATCTCCAATGTCCGGTTCTGTT 990
Query 1651 TCACCTTACAATAGCCTCGGGATGAAGAGAGCTAAGACAAG 1691
|| |||||||||||||| || ||||||||||| || |||||
Sbjct 991 TCTCCTTACAATAGCCTTGGTATGAAGAGAGCCAAAACAAG 1031
> AT4G26485.1 | Symbols: | Domain of unknown function (DUF2431)
| chr4:13377685-13378390 REVERSE LENGTH=516
Length=516
Score = 761 bits (412), Expect = 0.0
Identities = 458/481 (95%), Gaps = 0/481 (0%)
Strand=Plus/Plus
Query 1 ATGAACATAACCGCAACCTCTCTCGATTCTGAAGATGAACTGTGCACAAAATATATGGAT 60
||||||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1 ATGAACATAACTGCGACCTCTCTCGATTCTGAAGATGAACTGAGCATAAAATATATGGAT 60
Query 61 GCGATGGATAACATAAACAAATTGGAGAGATACGGATGTGATATTCAGCACGATGTTGAC 120
||| ||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||||
Sbjct 61 GCGGTGGATAACATAAACATATTGAAGAGATACGGGTGTGATATTCAGCACGAGGTTGAC 120
Query 121 GTGCACACAATGAGCTTCGATAATAGTTTGAGCCTGCAACGCTATGACCGCATTGTCTTC 180
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 GTGCACACAATGAGCTTCGATAATAGTTTGAGTCTGCAACGTTATGACCGCATTGTCTTC 180
Query 181 AATTTCCCTCACGCAGGGTCACGTTTCTTTGGTCGTGAATTTTCATCTAGGGCCATCGAG 240
||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 181 AATTTTCCTCACGCAGGGTCTCGTTTCTTTGGTCGTGAATTGTCCTCTAGGGCCATCGAG 240
Query 241 AGCCACAAAGAGTTAGTGAGAGGTTTTCTTGAGAACGCTAAGGAGATGTTGGAAGAGGAC 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCCACAAAGAGTTAGTGAGAGGATTTCTTGAGAACGCTAAGGAGATGTTGGAAGAGGAC 300
Query 301 GGGGAGATCCATATCACACACAAGACAACGTATCCATTTAGCGATTGGGGGATAAAGAAG 360
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAGAGATCCATATTACACACAAGACAACGTATCCATTTAGCGATTGGGGGATAAAGAAG 360
Query 361 CTGGCTAAAGGAGAAGGTTTGAAGTTGCTTAAGAAATCGAAGTTCGAGCTGAGTCATTAT 420
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 CTGGGTAAAGGAGAAGGTTTGAAGCTGCTTAAGAAATCGAAGTTCGAGCTGAGTCATTAT 420
Query 421 CCGGGTTATATCAACAAGAGAGGTAGTGGTGGACGTAGGAGTGATGATTACTTCCCTGTT 480
||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 421 CCGGGTTATATCACCAAGAGAGGGAGTGGTGGACGTAGGAGTGATGATTATTTCCCTGTT 480
Query 481 G 481
|
Sbjct 481 G 481
> AT4G26483.1 | Symbols: | nicotianamine synthases | chr4:13376647-13376970
REVERSE LENGTH=255
Length=255
Score = 178 bits (96), Expect = 2e-43
Identities = 121/133 (91%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 477 TGTTGACGTTGATCCTTGTGATCTAAAAGGTTTCGAGGTCTTGGAAATTTATCACCCGTC 536
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 TGTAGACGTTGATCCTTGTGATCTAAAAGGTTTCGAGGTCTTGGAAATCTATCACCCGTC 119
Query 537 CATGTCTGATGGCTTTGTGAACTCAGTGATGGTCGCACGCAAAATTAATCAGCGATTGAA 596
|||||||||||||||||||||||| || ||||||||||||||| | | | | ||||| ||
Sbjct 120 CATGTCTGATGGCTTTGTGAACTCGGTAATGGTCGCACGCAAACTCACTGATCGATT-AA 178
Query 597 T-AAGCACGAGTG 608
| ||| |||||||
Sbjct 179 TTAAGTACGAGTG 191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5