BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492166
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26470.1 | Symbols: | Calcium-binding EF-hand family protei... 1343 0.0
> AT4G26470.1 | Symbols: | Calcium-binding EF-hand family protein
| chr4:13371066-13372392 FORWARD LENGTH=892
Length=892
Score = 1343 bits (727), Expect = 0.0
Identities = 844/898 (94%), Gaps = 17/898 (2%)
Strand=Plus/Plus
Query 1 TGATCTCGAGACAAACAAGAAACTAAAACAGACATTGTTCGTATATTTTGGACAACCAAG 60
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||
Sbjct 1 TGATCTCGAGACAAACAAGAAACTAAAACAGACAGTGTTTGTATATTTCGGACAAACAAG 60
Query 61 ACGTT---AAGCTGCCTTGTCTTACAAGAAACTAGATTTTTGTCTCGGGGTGAATCTACG 117
||||| |||||||||||||||||||||||||||| ||||||||| ||| | | ||
Sbjct 61 ACGTTAAAAAGCTGCCTTGTCTTACAAGAAACTAGA-TTTTGTCTC-GGG-G----T-CG 112
Query 118 ATCTGATCTCCGAGCACAGACAAATTAACAGAGACATGGGAGGTGCAGTGACGAAATCTG 177
|||| |||||| | || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 113 ATCTTATCTCCAAACAGAGAGAAATTAACAGAGACATGGGAGGTGCAGTGACGAAATCTG 172
Query 178 AATCTCTGCAAAAAGAATGGGTTCCAGAGACAAAGTTGGAGGCTAAGATCATAGAAGCCG 237
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 AAACTCTGCAAAAAGAATGGGTTCCAGAGACAAAGTTGGAGGCTAAGATCATAGAAGCCG 232
Query 238 TGCAACGCAGGGCATCGAGAGGCACCACAATGAAATCTTTCAACAGCATTGTTCTCAAGT 297
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 233 TGCAACGCAGGGCATCGAGGGGCACCACAATGAAATCTTTCAACAGTATTGTTCTCAAGT 292
Query 298 TCCCAAAGATCGATGATGGTCTTCGAAACTGCAAAGCCATTTTCCAAGAATTTGATGAGG 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 293 TCCCAAAGATCGATGATGGTCTTCGAAACTGCAAAGCCATTTTCCAAGAATTCGATGAGG 352
Query 358 ATTCAAACGGGTCTATCGATCACACAGAGCTAAAGAATTGTATCAAGAAGCTAGAGATCT 417
||||||||||||| || |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 353 ATTCAAACGGGTCAATAGATCACACGGAGCTAAAGAATTGTATCAGGAAGCTAGAGATCT 412
Query 418 CGTTCGATGAAGAAGAGATAAATGATTTGTTCAAGGCTTGTGATATTAACGAGGATATGG 477
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 413 CGTTCGATGAAGAAGAGATTAATGATTTGTTCAAGGCTTGCGATATTAACGAGGATATGG 472
Query 478 GAATTACATTTACAGAGTTCATTGTTCTTCTGTGCCTCGTCTATCTTCTTAAAGACGATT 537
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 473 GAATTACATTTACAGAATTCATTGTTCTTCTTTGCCTCGTCTATCTTCTTAAAGACGATT 532
Query 538 CATCCACTCTCCAAAAGAAATGGACAATGGGAATGCCGAAGCTGGAACCGACATTCGAGA 597
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 533 CATCCACTCTCCAAAAGAAATGGACAATGGGAATGCCAAAGCTGGAACCAACATTCGAGA 592
Query 598 CGCTTGTGGACACATTTGTGTTCCTGGACGAGAACAAGGATGGGTACGTTAGCCGTGAGG 657
||||||| ||||||||||||||||| |||||||||||||| || || |||||||| ||||
Sbjct 593 CGCTTGTTGACACATTTGTGTTCCTAGACGAGAACAAGGACGGATATGTTAGCCGCGAGG 652
Query 658 AGATGGTCCGAGCCATTGATGAATCTGGAGAACGATCCTCCGGGCGGATTGCAATGAAGA 717
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 653 AGATGGTCCGAGCCATTGATGAATCAGGAGAACGATCCTCCGGGCGGATTGCAATGAAGA 712
Query 718 GATTTGAGGAAATGGACTGGGACAAGAACGGAATGGTGAACTTCAAAGAGTTTCTGTTTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 713 GATTTGAGGAAATGGACTGGGACAAGAACGGAATGGTGAACTTCAAAGAGTTTCTCTTCG 772
Query 778 CATTTACGCAGTGGGTTGGGATAGATGAGAATGAAGACGAAGAAGA------CAACAATG 831
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 773 CATTTACGCAGTGGGTTGGGATAGATGAGAATGAAGAAGAAGAAGAAGAAGACAACAATG 832
Query 832 AGAAGGCTTGAATGTTATGAGTTTCTAAGTCTATATATATGTTTTGTGTTTGCAGAAT 889
|||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 833 AGAAAGCTTAAATGTTATGAGTTTCTAAGTCTAAATATGTGTTTTGTGTTTGCAGAAT 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5