BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492170
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26430.1 | Symbols: CSN6B | COP9 signalosome subunit 6B | ch... 1849 0.0
AT5G56280.1 | Symbols: CSN6A | COP9 signalosome subunit 6A | ch... 948 0.0
> AT4G26430.1 | Symbols: CSN6B | COP9 signalosome subunit 6B |
chr4:13354992-13357602 FORWARD LENGTH=1467
Length=1467
Score = 1849 bits (1001), Expect = 0.0
Identities = 1272/1392 (91%), Gaps = 62/1392 (4%)
Strand=Plus/Plus
Query 27 TATGGGCTACACTTAGGAA-GAAAGCCC-A-A---C-A-ACTATATAAAGATTCAT-ACC 77
||||||||| ||||| ||| |||||||| | | | | ||||||||||||||||| |||
Sbjct 99 TATGGGCTAAACTTA-GAAGGAAAGCCCAAGAGGCCAAGACTATATAAAGATTCATGACC 157
Query 78 CGACTTTAAGATCCGATTTGGGAATTTGGGACTAAAGGA-GACGATC-ACAAGCGCCGGG 135
||| ||||||||||||||| |||||||||||||||||| ||| | | ||||||||||||
Sbjct 158 CGAGTTTAAGATCCGATTTCAGAATTTGGGACTAAAGGAGGAC-AACGACAAGCGCCGGG 216
Query 136 AAAAAATCGAGAGCGACAACAATGGCGCCTTCTTCGTCGAGCGGTCTCACGTTCAAGCTA 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 AAAAAATCGAGAGCGACAACAATGGCGCCTTCTTCGTCGAGCGGTCTCACGTTCAAGCTA 276
Query 196 CATCCTCTGGTGATGCTTAACATATCCGATCACTTCACTAGGGTTAAAACTCAGCTTAGT 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 277 CATCCTCTGGTGATGCTTAACATATCCGATCACTTCACTAGGGTTAAAACTCAGCTTAAT 336
Query 256 CCTCCCGCCGCTTCTTGCGCCACCGGGAATGGCTCCAGCAACGCCGACGCGACGGTCCTG 315
||||||||||||||||||||||||||||||||||||| |||||||||||||| | | |||
Sbjct 337 CCTCCCGCCGCTTCTTGCGCCACCGGGAATGGCTCCAACAACGCCGACGCGATGTTACTG 396
Query 316 CAAAACCCTAGGGTTTATGGCTGCGTGATCGGTCTCCAGAGAGGTCGTACGGTTGAGATC 375
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 397 CAAAACCCTAGGGTTTATGGCTGCGTCATCGGTCTCCAGAGAGGTCGTACGGTTGAGATC 456
Query 376 TTCAACAGTTTCGAGCT-ATTGA-TCGATCCTACTAC-TGATACTCTCGACAGATCCTTC 432
||||||||||||||||| | | | |||||||| || | ||||||||||||||||||||||
Sbjct 457 TTCAACAGTTTCGAGCTGA-T-ATTCGATCCTGCT-CTTGATACTCTCGACAGATCCTTC 513
Query 433 CTCGAGAAGAAGCAAGAACTCTACAAGAAGGTGTTCCCTGACTTCTACATATTGGGATGG 492
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 514 CTCGAGAAGAAGCAAGAACTCTATAAGAAGGTGTTCCCTGACTTCTACGTATTGGGATGG 573
Query 493 TATTCGACGGGAAGCGACGCTACGGAATCTGATATGCATATCCACAAAGCTCTGATGGAC 552
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 574 TATTCTACGGGAAGTGACGCTACCGAATCTGATATGCATATCCACAAAGCTCTGATGGAC 633
Query 553 ATTAATGAATCTCCTGTGTATGTTCTTCTAAATCCTGCTATCAATCATGCACAGAAGGAT 612
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 634 ATTAATGAATCTCCTGTGTATGTTCTTTTAAATCCTGCTATCAATCATGCACAGAAGGAT 693
Query 613 CTTCCAGTGACTATCTACGAAAGCGAATTCCATGTCATTGATGGAGTTCCTCAGTCGATT 672
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 694 CTTCCTGTGACTATCTACGAAAGCGAATTTCATGTCATTGATGGAATTCCTCAGTCGATT 753
Query 673 TTCGTGCATACAAGCTACACTATTGAGACAGTTGAAGCTGAAAGAATATCGGTTGATCAT 732
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 754 TTCGTGCATACCAGCTACACAATTGAGACAGTTGAAGCTGAAAGAATATCTGTTGATCAT 813
Query 733 GTTGCACATCTCAAGCCATCTGATGGAGGCTCAGCAGCGACCCAATTGGCTGCTCATCTT 792
||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 814 GTTGCACATCTTAAGCCATCTGATGGAGGCTCAGCTGCGACTCAGTTGGCTGCTCATCTT 873
Query 793 ACTGGAATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTCTATCAGTAT 852
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 874 ACTGGAATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTATACCAGCAT 933
Query 853 ATTGTCGCTATGCAGAAAGGTGATATTCCTTGCGACAACGCACTTTTTCGACAAGTATCT 912
||||||||||||||||||||||||| ||||| || ||| || || | |||||||||||
Sbjct 934 ATTGTCGCTATGCAGAAAGGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATCT 993
Query 913 AGTCTGCTCAGAAGTTTGCCTGCCGCAGAATCTGAGAAGTTTC-ATGAAAATTTCTTGAT 971
|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 994 AGTCTGCTCAGAAGTTTGCCTGCCGCAGAATCAGAGAAG-TTCAATGAAAATTTCTTGAT 1052
Query 972 GGAGTACAACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGCAA 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GGAGTACAACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGCAA 1112
Query 1032 CATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAGCCGAAGAGGCGG 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1113 CATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACAAACACAGCCGAAGAGGTGG 1172
Query 1092 CGGTAGGAATGTGTTCATGTAAAGATTAGTGTCAGTGTAAAA-----TTTT-T------- 1138
||||| || |||||||||||||||||| ||| ||||||| |||| |
Sbjct 1173 ---TAGGACTGCGTTCATGTAAAGATTAGTTTCAATGTAAAAAAACCTTTTCTTTCTTTT 1229
Query 1139 G-TGGTCTGGTCCCTAAGTGAAAATTTA-ATACTCTTT-AAGGCATTTC-CTTTTCGGAA 1194
| |||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||
Sbjct 1230 GGTGGTCTGGTCCCTAAGTGAAAATTTAGA-ACTCTTTTAAGGCATTTCACTTTTCGGAA 1288
Query 1195 CCACACAA-CTAA--AG-AAG-TT--CTTCTGCTTAAGCTTTGTTTAGACAGAACTCAGA 1247
||| |||| | | || ||| || |||||| ||||||||||| ||||||||| |
Sbjct 1289 CCAAACAAAC-AGCTAGGAAGCTTTTCTTCTGTTTAAGCTTTGTCTAGACAGAA----G- 1342
Query 1248 AGCTAAGTTTAGGCCTAACTAAATTTTGCGACAAGACTTTAAAAACAATTCAGCTTTTAC 1307
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1343 --CTAAGTTTAGGCCTAACTAAATTTTGCGACAAGACTGTAAAAACAAAACAGCTTTTAC 1400
Query 1308 CTTCCCTCAAATTTCAGAACCATTTATTCAAAAATTAGAACAATCAGTGAACAAAGAGAT 1367
|||| ||||| ||| | ||||||||||||||| || ||||||||||||||||||||
Sbjct 1401 CTTCTCTCAATTTTT----C-ATTTATTCAAAAATTTGAGCAATCAGTGAACAAAGAGAT 1455
Query 1368 TTGTTTCATATC 1379
||||||||||||
Sbjct 1456 TTGTTTCATATC 1467
> AT5G56280.1 | Symbols: CSN6A | COP9 signalosome subunit 6A |
chr5:22783384-22785577 REVERSE LENGTH=1234
Length=1234
Score = 948 bits (513), Expect = 0.0
Identities = 814/958 (85%), Gaps = 25/958 (3%)
Strand=Plus/Plus
Query 144 GAGAGCGA-CAACAATGGCGCCTTCTTCGTCGAGCGGTCTCACGTTCAAGCTACATCCTC 202
||||| || | |||||||| ||||| || || |||||| | || |||||||||||||||
Sbjct 34 GAGAGAGATCGACAATGGCACCTTCGTCATCAAGCGGTTTAACCTTCAAGCTACATCCTT 93
Query 203 TGGTGATGC-TTAACATATCCGATCACTTCACTAGGGTTAAAACTCAGCTTAGTCCTCCC 261
|||| || | | |||||||| ||||||| ||||||||| ||||||||||| | ||||||
Sbjct 94 TGGTAAT-CGTCAACATATCGGATCACTACACTAGGGTCAAAACTCAGCTCAATCCTCCT 152
Query 262 GCCGC-TTCTTGCGCCACCGGGAATGGCTCCAGCAACGCCGACGCGACGGTCCTGCAAAA 320
|| | || ||||| | ||| ||||||| | ||||| ||| || | | ||| ||||||
Sbjct 153 GCTTCAATC-TGCGCAAGCGGCCATGGCTCAAACAACGGCGAAGCAATGTTCCAGCAAAA 211
Query 321 CCCTAGGGTTTATGGCTGCGTGATCGGTCTCCAGAGAGGTCGTACGGTTGAGATCTTCAA 380
|||||||||||| || || ||||||||| |||||||||||||||| |||||||| |||||
Sbjct 212 CCCTAGGGTTTACGGATGTGTGATCGGTGTCCAGAGAGGTCGTACTGTTGAGATATTCAA 271
Query 381 CAGTTTCGAGCTATTGAT-CGATCCTACTACTGATACTCTCGACAGATCCTTCCTCGAGA 439
|||||||||||| || || |||||| ||||| | || || || ||||| ||||||||||
Sbjct 272 CAGTTTCGAGCT-TTTATATGATCCTTCTACTCAAACCCTTGATAGATCTTTCCTCGAGA 330
Query 440 AGAAGCAAGAACTCTACAAGAAGGTGTTCCCTGACTTCTACATAT-TGGGATGGTATTCG 498
|||||||||| ||||| ||||||||||||||||| ||||| || | |||||||||| ||
Sbjct 331 AGAAGCAAGAGCTCTATAAGAAGGTGTTCCCTGATTTCTATAT-TCTGGGATGGTACTCT 389
Query 499 ACGGGAAGCGACGCT-ACGGAATCTGATATGCATATCCACAAAGCTCTGATGGACATTAA 557
|||||||| || ||| | ||||||||||||||||||||| |||||| ||||||| || ||
Sbjct 390 ACGGGAAGTGATGCTGA-GGAATCTGATATGCATATCCATAAAGCTTTGATGGATATCAA 448
Query 558 TGAATCTCCTGTGTATGTTCTTCTAAATCCTGCTATCAATCATGCACAGAAGGATCTTCC 617
|||||||||||| ||||| ||| |||| |||||||||||||| ||||||||||||||||
Sbjct 449 TGAATCTCCTGTTTATGTGCTTTTAAACCCTGCTATCAATCACACACAGAAGGATCTTCC 508
Query 618 AGTGACTATCTACGAAAGCGAATTCCATGTCATTGATGGAGTTCCTCAGTC-GATTTTCG 676
||||||||| || ||||| ||||| ||||||||||||||| | || ||| | |||||||
Sbjct 509 AGTGACTATTTATGAAAGTGAATTGCATGTCATTGATGGAATCCCGCAG-CTAATTTTCG 567
Query 677 -TGCATACAAGCTACACTATTGAGACAGTTGAAGCTGAAAGAATATCGGTTGATCATGTT 735
| |||||||||||||| || |||||||||||||||||| | ||||| ||||||||||||
Sbjct 568 CT-CATACAAGCTACACAATCGAGACAGTTGAAGCTGAACGGATATCAGTTGATCATGTT 626
Query 736 GCACATCTCAAGCCATCTGATGGAGGCTCAGCAGCGACCCAATTGGCTGCTCATCTTACT 795
|||||||| || |||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 627 GCACATCTTAAACCATCTGACGGAGGCTCAGCAGCAACCCAGTTGGCTGCTCATCTTACT 686
Query 796 GGAATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTCTATCAGTATATT 855
|| |||||||||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct 687 GGTATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTTTACCAAAATCTT 746
Query 856 G-TCGCTATGCAGAAAGGTGATAT-TCCTTGCGACAACGCACTTTTTCGACAAGTATCTA 913
| | || |||||||||||||||| || ||| |||||| || || | ||||||||||||
Sbjct 747 GCT-GCAATGCAGAAAGGTGATAAATC-TTGTGACAACTCAGTTCTGAGACAAGTATCTA 804
Query 914 GTCTGCTCAGAAGTTTGCCTGCCGCAGAATCTGAGA-AGTTTCATGAAAATTTCTTGATG 972
| ||||| ||||| ||||||||| ||||| |||| | ||||| || ||||||||||||
Sbjct 805 GCCTGCTAAGAAGATTGCCTGCCATGGAATCAGAGAGA-TTTCAAGATAATTTCTTGATG 863
Query 973 GAGTACAACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGCAAC 1032
||||||||||||||||| || || |||||||||| ||||| || |||||| ||||||||
Sbjct 864 GAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGTTCCAGCAAC 923
Query 1033 ATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACA-AACACAGC-CGAAGAGG 1088
||||||||| |||| |||||||||||||| ||||| |||| || ||| | ||||||||
Sbjct 924 ATGAACGAGATGGTCGACAAATTCAACACCGCATATGACAGAA-ACA-CTCGAAGAGG 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67921337385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5