BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492175
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26400.2 | Symbols: | RING/U-box superfamily protein | chr4... 2067 0.0
> AT4G26400.2 | Symbols: | RING/U-box superfamily protein | chr4:13344848-13346574
REVERSE LENGTH=1390
Length=1390
Score = 2067 bits (1119), Expect = 0.0
Identities = 1295/1378 (94%), Gaps = 19/1378 (1%)
Strand=Plus/Plus
Query 1 tcttcgtcttcgtcttcgtcttcctttcctccttcattcctcttttcttcttctccCACC 60
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 15 TCTTCGTCTTCATCTTCGTCTTCCTTTCCTCCTTCATTCCTCTTTTCTTCGTCTCCCACC 74
Query 61 ATTTCTGCAGAAGAAGACAAAT-AAAGAGCTCTCATTTATCTTGGTGGAGATCTaaaaaa 119
|||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |
Sbjct 75 ATTTCTGCAGAAGAAGACAAATAAAAAAGCTCTCATTTATCTTCGTGGAGATCTAAAAGA 134
Query 120 aGGGA-GAAGACAtttttttCCTCTGGATCTCCTAAAAAACGAGATATTTAGGTGGGGAA 178
| ||| |||||||||| || ||||||||||||| ||||||||||| ||| |||||||||
Sbjct 135 A-GGAGGAAGACATTTCTTCCCTCTGGATCTCCAAAAAAACGAGAGGTTTGGGTGGGGAA 193
Query 179 GG---GAAGGAGGGATAGGCAATGGCAGCTAGGTATTGGTGTCATATGTGTTCACAAATG 235
|| |||||||| | |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 194 GGAAAGAAGGAGGAAGAGGCAATGTCAGCTAGGTATTGGTGTCACATGTGTTCACAAATG 253
Query 236 GTGAATCCAATTATTGATGCCGAGATCAAATGCCCCTTTTGCCAGAGCGGGTTTGTCGAG 295
||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 254 GTGAATCCAGTTATTGGTGCCGAGATCAAATGCCCCTTTTGCCAAAGCGGGTTTGTCGAG 313
Query 296 GAAATGAGCCTTGAGATTAGTGGCGGCAGCAGCAGTAGTCTAAGGGAGGTTCAAGACCCA 355
|||||||||| |||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 314 GAAATGAGCCGTGAGATTAATGGCGGCAGCAGTAGCAGTCTAAGGGAGGTTCAAGACCCT 373
Query 356 GAGATCGATTTTGGTACAGACCGTGCATTGTCTCTATGGGGTCCAATTTTGCTTGGAATG 415
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 374 GAGATTGATTTTGGTACAGACCGTGCATTGTCTCTATGGGGTCCAATCTTGCTTGGAATG 433
Query 416 ATGAGTAATCCTCGGAGACGTAGAAGGTTTAGGAGGACAGAGTTTGGTGTGGATAATGAT 475
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 ATGAGTAATCCTCGTAGACGTAGAAGGTTTAGGAGGACAGAGTTTGGTGTGGATAATGAT 493
Query 476 GAGGTCAATGGTGT-TGCTGTTGTTGATGGAAATGACAGCAATGTAGATACTGATCGACA 534
||||||||| || | || || ||||||||||||||||||| || |||| |||||||||
Sbjct 494 GAGGTCAAT-GTATCTGATGATGTTGATGGAAATGACAGC---GTCGATATTGATCGACA 549
Query 535 TCATCATCTTCGTCATCGCCACAGGCAACAAGGTAGAGAGATTGATTTAGACAGAGAGTT 594
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TCATCATCGTCGTCATCGCCACAGGCAACAAGGTAGAGAGATTGATTTAGACAGAGAGTT 609
Query 595 TGAGTCTATCCTTAGGAGGAGACGGAGAAGCTCAGCTTCCATATTGCAGTTGCTTCAGGG 654
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 610 TGAGTCTATCCTTAGGAGGAGACGGAGAAGCTCAGCTACTATATTGCAGTTGCTTCAGGG 669
Query 655 GATTCGTGCAGGGATTGCTTCCGAGTATGAGAGTTCGGACCGAGACCAGTTTAATCAATC 714
|||||||||||||||||||| ||||||||||| ||||| ||||||| ||| ||||||||
Sbjct 670 TATTCGTGCAGGGATTGCTTCTGAGTATGAGAGCTCGGATCGAGACCTGTTAAATCAATC 729
Query 715 AGCTGTTGTTCAGGGATCGACTAGTTTGAATCAAAACCGGAACAATACTTCTCTTTCTGC 774
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 730 AGCTGTTGTTCAGGGTTCAACGAGTTTGAATCAAAACCGGAACAATACTTCTCTTTCTGC 789
Query 775 AATTGGAGATTACTTTGTTGGACCCAGTTTAGACCACTTGCTTGAACATCTAGCTGATAA 834
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 790 AATTGGAGATTACTTTGTTGGATCCAGTTTAGACCATTTGCTTGAACATCTAGCTGATAA 849
Query 835 CGATTCAACCAGGCACGGGAGTCTTCCAGCACGGAAAGAAGCCGTGGAAAATCTCCCAAC 894
||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 850 TGATTCAATCAGGCACGGGAGTCTTCCAGCACGTAAAGAAGTTGTGGATAATCTCCCAAC 909
Query 895 GGTTAAGATATGTGAATCATTGCAGTGCTCGATTTGTTTGGATGATTTTGACAAAGGAAG 954
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GGTTAAGATAAGTGAATCATTGCAGTGCTCGATTTGTTTGGATGATTTTGACAAAGGAAG 969
Query 955 TGAAGCTAAAGAGATGCCGTGTAAGCACAAGTTTCACATCCGGTGTATAGTACCATGGCT 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 970 TGAAGCTAAAGAGATGCCGTGTAAGCACAAGTTTCACATCCGGTGTATAGTACCGTGGCT 1029
Query 1015 TGAGCTTCACAGTTCGTGTCCCGTGTGCCGATATGAACTCCCTCCTGATGATGAGACCAA 1074
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CGAGCTTCACAGTTCATGTCCCGTGTGCCGATATGAACTCCCTCCTGATGATGAGACCAA 1089
Query 1075 GGTTGATCCGGTAAGACCGAGAACAAGAACTCTAGAGATCAACATAAGTAATGAGAATGT 1134
|||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1090 GGTTAATCCTGTAAGACCGAGAACAAGAACTCTAGAGATCAACGTAAGTAATGAGAATGT 1149
Query 1135 GGAAGATGATGCAAGGAACAGTAATGTGAGCGAGAGAAGGTTCTCTTTTCCGTGGCCATT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1150 GGAAGATGATGCAAGGAACAGTAATGTGAGCGAGAGAAGGTTCTCTTTTCCATGGCCGTT 1209
Query 1195 CAGCGGATTATTCTCTTCATCCTCTTCGTCATCCGCATCGGCCTCGGGGTCATCTCATCT 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 CAGCGGATTATTCTCTTCATCCTCTTCGTCATCCGCATCGGCCTCGGGGTCATCTCATCT 1269
Query 1255 CGGTGAGAACTCATAATCTGCTATTCCTCAGCTTATATAGTACATAAAATCTTGTTCACT 1314
|||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1270 CGGTGAGAACTCGTAAACTGCTATTCCTCAGCTTATA--GTACATAAAATCTTGTTCACT 1327
Query 1315 CAGATTGTTGAATA-T--A---CAAATAAACACTTTGGAGGAATGGAATCTTTCCTTT 1366
|||||||||||||| | | |||||||||||||| |||||||||||||||| ||||
Sbjct 1328 CAGATTGTTGAATACTGCATAACAAATAAACACTTTCGAGGAATGGAATCTTTTCTTT 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67268730300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5