BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492177
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26370.1 | Symbols: | antitermination NusB domain-containin... 2128 0.0
> AT4G26370.1 | Symbols: | antitermination NusB domain-containing
protein | chr4:13333724-13336230 REVERSE LENGTH=1358
Length=1358
Score = 2128 bits (1152), Expect = 0.0
Identities = 1289/1354 (95%), Gaps = 13/1354 (1%)
Strand=Plus/Plus
Query 1 tttttttCAATTTTACGGATATCGTTATCTGCTTCTCACACTAACACGACGAAGCAGAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1 TTTTTTTCAATTTTACGGATATCGTTATCTGCTTCTCACACTAACACGGCGAAGCAGAAA 60
Query 61 AAGAGCTCGAAACAAAAATGGAGGGAACCATCTCGCCGCTTTGCTTACGTTCTTCTTCGA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AAGAGCTCGAAACAAAAATGGAGGGAACCTTCTCGCCGCTTTGCTTACGTTCTTCTTCGA 120
Query 121 GTCTCTGTTACTTCTCCAGTAATATCTCACCAGATTCTCACCGTTCTATAGGATTTACAT 180
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 121 ACCTCTGTTACTTCTCCAGTAATGTTTCACCAGATTCTCACCGTTCTATAGGATTTACAT 180
Query 181 TGGTTGATTCACTCCGGCCAACGAACTTGGTTTCCCTCCGAACGGGAAATAAACGGTCGT 240
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 181 TGGTTGATTCGCTCCGGCCAACGAACTTGGTTTCCCTGCGAACGGGAAATAAACGTTCGT 240
Query 241 CGTCGTC-T--CTACGGCTATTTCTCTCTCCGACGAGAAGCGCTCTCCGTACGCCGACTA 297
| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 CATCGTCTTCACTACGGCTATTTCTCTCTCCGACTAGAAGCGCTCTCCGTACGCCGACTA 300
Query 298 TTTCCGCGGATGAGGTGAAAGATGTTCCGATGCCCAAGATTGATAAGAGCGGCCGATTAA 357
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 301 TTTCCGCGGAGGAGGTGAAAGATGTCCCGATGCCGAAGATTGATAAGAGCGGCCGATTAA 360
Query 358 GCAGTCCTCGAGCCGCACGCGAGCTCGCTCTTGTAATACTCTATGCCGCATGCTTAGAAG 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 GCAGTCCTCGAGCCGCACGCGAGCTCGCTCTTGTAATACTTTATGCCGCATGCTTAGAAG 420
Query 418 GCTCCGACCCAATTCGTCTCTTTGAGAAGAGAATAAATGCAAGAAGAGAGCCTGGATACG 477
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 GCTCTGACCCAATTCGTCTCTTTGAGAAGAGAATAAACGCAAGAAGAGAGCCTGGATACG 480
Query 478 AGTTTGACAAGACTTCTTTGTTGGAATACAACCACATGAGCTTTGGAGGACCCCCAGTTA 537
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGTTTGACAAGAGTTCTTTGTTGGAATACAACCACATGAGCTTTGGAGGACCCCCAGTTA 540
Query 538 AAACTGAAACAAAAGAAGAGGAAGATGAGCTTGTGCGCCATGATGAAAAAGAATCGAAAA 597
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAACAGAAACAAAAGAAGAAGAAGATGAGCTTGTGCGCCATGATGAAAAAGAATCGAAAA 600
Query 598 TCGAAGCCGAAGTGCTTTCAGCTCCCCCAAAGCTGGTGTATAGCAAACTTGTTTTACGGT 657
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 TCGAAGCCGAAGTGCTTTCAGCTCCCCCAAAGCTGGTGTACAGCAAACTTGTTTTACGGT 660
Query 658 TTGCAAAGAAACTCTTGGCTGCAGTAGTTGATAAATGGGATAGCCATGTCGTTATCATCG 717
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 661 TTGCAAAGAAACTCTTGGCTGCGGTAGTTGATAAATGGGATAGTCATGTCGTTATCATCG 720
Query 718 AGAAAATTTCCCCACCAGATTGGAAGAGTGCACCAGCTGGAAGAATATTGGAGTTTTCAA 777
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 AGAAAATTTCCCCGCCAGATTGGAAGAGTGCACCAGCTGGAAGAATATTGGAGTTTTCGA 780
Query 778 TTCTTCACTTAGCAATGTCTGAAGTGGCAGTACTTGAAACCCGACACCCAATAGTCATCA 837
|||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| |
Sbjct 781 TTCTTCACTTGGCAATGTCTGAAGTGGCAGTCCTTGAAACCCGACACCCGATTGTCATTA 840
Query 838 ACGAGGCTGTTGATCTTGCAAAACGGTTCTGCGATGGATCAGCGCCACGCATAATCAACG 897
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 ACGAGGCTGTTGATCTTGCAAAACGGTTCTGCGATGGATCAGCACCACGCATAATCAACG 900
Query 898 GATGCCTAAGGACATTTGTCAAGGATAGAGCAGCAACATCAACACCTCAAGCTTTAGAAT 957
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 GATGCCTAAGGACATTTGTCAAGGATAGAGCAACAACATCAACACCTCAAGCTTTAGAAT 960
Query 958 TGAAGCAAGAAGTGTCAGTTTAAATTAGAACAAAACCCGCATCTTCGTTAGGAGGCAGGC 1017
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGAAGCAAGAAGTGTCGGTTTAAATTAGAACAAAACCCGCATCTTCGTTAGGAGGCAGGC 1020
Query 1018 AAACCTCAGGAAT-TTGGTCGTCGGAAGTCACTAGTAGGCAAAGTGTTGATCCGACGATC 1076
|| ||||| || | |||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1021 AA-CCTCAAGA-TGTTGGTCGTCGGAAGTCGCTAGTAGGCAAAGTGTTGATCCGATGATC 1078
Query 1077 TTATACATA-GACGGAGTCGCTCTCTGTCTTCACAGGCCGCTTCTGGTCC-AAGCTTTTG 1134
||||| || ||| |||||||||||||||| |||| ||||||||||||| |||||||||
Sbjct 1079 TTATATATTCGACAAAGTCGCTCTCTGTCTTGACAGACCGCTTCTGGTCCGAAGCTTTTG 1138
Query 1135 ATACCTGAGACTGAATCTATCTATTGCAGGTCAACATGATTATTGATAAGAACACAACAT 1194
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||
Sbjct 1139 ATACCTGAGACTGAATCTATCCATTGCAGGTCAACATGATTATTGCTAAGAACACAGCAT 1198
Query 1195 AGTCATGTCTGTATTAATATAATGCCCCTAAGATAGTAGTATAATTTATGTAGTGGTTTT 1254
| ||||||||||||||||||| ||||| |||||||||| | ||||||||||||| |||||
Sbjct 1199 ACTCATGTCTGTATTAATATATTGCCCATAAGATAGTA-T-TAATTTATGTAGTAGTTTT 1256
Query 1255 CATGTTTCTGTCTTTGTATCCTCCTCC---ACTTGTGTCCCATATTTGAGAACaaaaaaa 1311
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1257 CATGTTTCTGTCTTTGTATCCTCCTCCTTCACTTGTGTCCCATATTTGAGAACAAACAAA 1316
Query 1312 GCTGTAAAATCAGGTTTTTCGTATAGATGTTTTT 1345
|||||| |||||||||||||||||||||||||||
Sbjct 1317 GCTGTATAATCAGGTTTTTCGTATAGATGTTTTT 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5