BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492179
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26340.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1744 0.0
> AT4G26340.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr4:13324130-13325590 FORWARD LENGTH=1291
Length=1291
Score = 1744 bits (944), Expect = 0.0
Identities = 1181/1296 (91%), Gaps = 13/1296 (1%)
Strand=Plus/Plus
Query 1 ATGGACCGTATCAGTCAACTTTCCGATGATTTGCTCTTGCGGATTTTGTC-TTGTGTTCC 59
||||||||||| ||||||||||| |||||||||||||||| || ||||| || | ||||
Sbjct 1 ATGGACCGTATTAGTCAACTTTCGGATGATTTGCTCTTGCAAATATTGTCGTT-TATTCC 59
Query 60 TACAAAAGATGTTGTGGCTACAAGTCTTTTGTCCAAAAGATGGCAGTTTCTTTGGATGTT 119
||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||
Sbjct 60 GGGAAAAGATGTTGTGGCCACAAGTCTTTTGTCCAAAAGGTGGCAGTCTCTTTGGATGTT 119
Query 120 AGTGCCACAACTTCAATACAATGATATCAATCACAGTGGTGACTATAAGAACTTCTCTCA 179
||| | ||||| | ||| |||||| | | |||| |||||| ||||||| |||||||||
Sbjct 120 AGTTTCGGAACTTGAGTACGATGATAGCTACCACACTGGTGATTATAAGAGCTTCTCTCA 179
Query 180 GTTTGTTTACAGATCTTTGCTTTCAAATAAGGCATCTGTTATAGAACATCTGCATCTGAA 239
|||||||||||| |||||||| ||||| || ||| |||||||| ||||| ||||||||||
Sbjct 180 GTTTGTTTACAGGTCTTTGCTATCAAACAATGCACCTGTTATAAAACATTTGCATCTGAA 239
Query 240 TCTTGGCCCTGACTGTCCCGCTATAGATATTGGACTATGGATTGGTATTGCCCTTAGTCG 299
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 240 TCTTGGCCCTGACTGTCCCGCTATAGATATTGGACTATGGATTGGTTTTGCTCTTACTCG 299
Query 300 CCGTCTGCGTGAACTGGAAATTAATATTCGTTCTTCTTTCGA-GAATGTGTCTTTCAGTT 358
||||||||| | ||| |||||||||||||| |||||| | | | ||| |||||||||||
Sbjct 300 CCGTCTGCGCCAGCTGAAAATTAATATTCGTACTTCTTCCAACG-ATGCGTCTTTCAGTT 358
Query 359 TGCCGAGTAGCCTATATACCTCTGATACACTAGAGACCTTGAGAGTGATCAATTTCGTTC 418
||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 359 TGCCGAGTAGCCTATATACCTCTGATACATTAGAGACCTTGAGACTCATCAATTTCGTTC 418
Query 419 TATTGGTTGTTCCTTCTTCAGTTTGTCTCCCGTCTCTCAAAGTTCTGCACCTTAAGACTG 478
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 TATTGGATGTTCCTTCTTCAGTTTGTCTCCCGTCTCTCAAAGTTCTACACCTTAAGACTG 478
Query 479 TTGATTACGAGGACGACGCATCTCTTCCAAATCTTTTATCAGGCTGTCCAAATCTTGAAG 538
|||||||||| ||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 479 TTGATTACGAAGACGACGCATCTCTTCCAAGTCTTTTATTTGGTTGTCCAAATCTTGAAG 538
Query 539 AATTATGTCTGGAGCGACATGATCAAGACTCAGAAATGGATTTCACTGTCGTGGTGCCTT 598
| || | | ||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 539 AGTTGTTTGTGGAGCGACATGATCAAGACTTAGAAATGGATGTCACTTTCGTGGTGCCTT 598
Query 599 CCTTACGACGGTTATCTATGATGGACGAAAATTATGTAAAATGTGGTCGATATGTGATAG 658
|||||||||||||||| ||||| ||| ||||||||| | |||||| ||||||||||||||
Sbjct 599 CCTTACGACGGTTATCCATGATCGACAAAAATTATGGACAATGTGATCGATATGTGATAG 658
Query 659 ATGTCCCTTCTTTGAAGTACCTGAACATTACAGATGAAGCAGTTTACAACGTCCGTCAAA 718
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 659 ATGTCCCTTCTTTGAAGTACCTTAACATTACAGATGACGCAGTTTACGACGTCCGTCAAA 718
Query 719 TTGAGAACATGCCTGAGTT-GACTGAGGCATATGTTGAGATTACTCAAGGAGTTACTCAC 777
||||||||||||||||||| | | |||||| ||||||| |||||||||||||||||||||
Sbjct 719 TTGAGAACATGCCTGAGTTGGTC-GAGGCACATGTTGACATTACTCAAGGAGTTACTCAC 777
Query 778 AAGTTTCTGAGGGCTCTTACTACTGTCCGACATCTTTCTCTATGTTTATCACTTTCAGAG 837
||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct 778 AAGTTTCTGAGGGCTCTTACTTCTGTCCGACAACTTTCTCTATGTTTATCACTCTCAGAG 837
Query 838 GTTATGTGTCCTTCTGGAATGATCTTCTA-TCAGCTTGTTCATCTGAACTTGTATACATT 896
||||||||||||||||| || |||||| | ||||||||||||||||||||||| |||| |
Sbjct 838 GTTATGTGTCCTTCTGGTATAATCTTC-AGTCAGCTTGTTCATCTGAACTTGTCTACAGT 896
Query 897 TGCTCAAGGTTGGTGGGATCTTCTTACCTATATGCTCCAAGATTCCCCCAAACT-AAGAT 955
|| | |||||||||||||||||||||| | |||||||||||||||||||||||| | ||
Sbjct 897 TGTTAAAGGTTGGTGGGATCTTCTTACTTCTATGCTCCAAGATTCCCCCAAACTCCA-AT 955
Query 956 TTCTCAAGCTCATTGAT--A-AACATGATTCTGGTCTTTGTGGGAAAGAAACCCCAATTG 1012
|||||| ||||| ||| | ||||||| || ||||||||||||| ||||||||||||||
Sbjct 956 CTCTCAAACTCATCGATAAACAACATGAGTCGGGTCTTTGTGGGATAGAAACCCCAATTG 1015
Query 1013 GTTGGAAGCTGCCGAGTTCTGTCCCCGAGTGTTTGTTGTTTAGTCTTGAGGCATTTGAGT 1072
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1016 GTTGGAAGCTGCCGAGTTCTGTTCCCGAGTGTTTGTTGTTTAGTCTAGAGGCATTTGAGT 1075
Query 1073 GGATTGGGTACAAAGGGAGACGAGGAGATAGAGAGATGGCAACCTATGTCCTAAAGAATG 1132
||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1076 GGATTGGATACAAAGGGAGGCGAGGAGATAGAGAGGTGGCAACATATGTCCTAAAGAATG 1135
Query 1133 CTGCTTGTTTGAGCACAGCAAAGTTCTCTCCAGAATCTACTGATGTGGGAGACAAGTATC 1192
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1136 CTGCTTGTTTGAGGACAGCAAAGTTCTCTCCAGAGTCTACTGATGTGGGAGAGAAGTATC 1195
Query 1193 ATATGCTCAAGGAGTTGGCATCAGTACCTACAGCTTCAACTTCGTCTAAGCTTCTATTCG 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATATGCTCAAGGAGTTGGCATCAGTACCTACAGCTTCAACTTCGTCTAAGCTTCTATTCG 1255
Query 1253 ACTAAGAATAGTTATATTTAGTTTTCTTGGTATCTC 1288
||| |||||||| |||||||| ||||||||||||||
Sbjct 1256 ACTGAGAATAGTAATATTTAGGTTTCTTGGTATCTC 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63353087790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5