BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492181

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26320.1 | Symbols: AGP13 | arabinogalactan protein 13 | chr...   486    5e-137


> AT4G26320.1 | Symbols: AGP13 | arabinogalactan protein 13 | chr4:13317100-13317470 
REVERSE LENGTH=371
Length=371

 Score =  486 bits (263),  Expect = 5e-137
 Identities = 313/337 (93%), Gaps = 3/337 (1%)
 Strand=Plus/Plus

Query  1    ACTAAACATATAATCTCTTTGTGCTTTCTCAAGAACCACTTAGAGATAAATCAATGGAGG  60
            |||||||||||| |||||| ||||||||||||||||||| |||||||||  |||||||||
Sbjct  4    ACTAAACATATAGTCTCTTCGTGCTTTCTCAAGAACCACCTAGAGATAACCCAATGGAGG  63

Query  61   CAATGAAGATGAGACTCTTTGTGGCGGTTTTGGTGGCGGCGATGGCTTTTTCTGCTGTGC  120
            ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct  64   CAATGAAGATGAGACTCTTTGTGGCGGTTTTGGTGGCAGCGATGGCTTTCTCTGCGGTGC  123

Query  121  AACAGGTTGCCGCGGTGGAGGCTCCCGCTCCGAGTCCTACCTCCGACGCTTCTTTGTCCA  180
            |||||| |||||||||||||||||| |||||||||||||||||||| ||||| ||| |||
Sbjct  124  AACAGGCTGCCGCGGTGGAGGCTCCAGCTCCGAGTCCTACCTCCGATGCTTCCTTGGCCA  183

Query  181  TCCCGGCTTTCTTCGCCTCTGTAGCCACTTTGGCCTTTGGGTTTCTCTTCTAGACAAATT  240
            |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  184  TCCCCGCTTTCTTCGCCTCGGTAGCCACTTTGGCCTTTGGGTTTCTCTTCTAGACAAATT  243

Query  241  TGTTTTTGTCTTTTTGATCTGATAAAAACCATATTCTTGAttttttt-ttt-gtttttCT  298
            ||||||||||||||| || | ||||||| |||||||||| ||||||| ||| | ||||| 
Sbjct  244  TGTTTTTGTCTTTTTAATGTTATAAAAATCATATTCTTG-TTTTTTTATTTCGGTTTTCA  302

Query  299  TTCTTATGTACTGTTCTAAGATTTTCCACATTTGAAT  335
            |||||||||||||||||||||||||||||||||||||
Sbjct  303  TTCTTATGTACTGTTCTAAGATTTTCCACATTTGAAT  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15633269939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5